| Literature DB >> 35974833 |
Zeliha Atioğlu1, Mehmet Akkurt2, Namiq Q Shikhaliyev3, Naila A Mammadova3, Gülnara V Babayeva3,4, Victor N Khrustalev5, Ajaya Bhattarai6.
Abstract
A new polymorph of the title compound, C14H8Br3N3O2, (form-2) was obtained in the same manner as the previously reported form-1 [Akkurt et al. (2022 ▸). Acta Cryst. E78, 732-736]. The structure of the new polymorph is stabilized by a C-H⋯O hydrogen bond that links mol-ecules into chains. These chains are linked by face-to-face π-π stacking inter-actions, resulting in a layered structure. Short inter-mol-ecular Br⋯O contacts and van der Waals inter-actions between the layers aid in the cohesion of the crystal packing. In the previously reported form-1, C-H⋯Br inter-actions connect mol-ecules into zigzag chains, which are linked by C-Br⋯π inter-actions into layers, whereas the van der Waals inter-actions between the layers stabilize the crystal packing of form-2. Hirshfeld mol-ecular surface analysis was used to compare the inter-molecular inter-actions of the polymorphs. © Atioğlu et al. 2022.Entities:
Keywords: C—H⋯O interactions; Hirshfeld surface analysis; azo compounds; crystal structure; polymorphism
Year: 2022 PMID: 35974833 PMCID: PMC9361372 DOI: 10.1107/S2056989022007113
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C8—H8⋯O1i | 0.95 | 2.56 | 3.394 (2) | 146 |
Symmetry code: (i) .
Figure 2View down the a-axis of the C—H⋯O and π–π interactions (dashed lines) in the title compound.
Figure 3View down the b-axis of the C—H⋯O and π–π interactions (dashed lines) in the title compound.
Figure 4View down the c-axis of the C—H⋯O and π–π interactions (dashed lines) in the title compound.
Summary of short interatomic contacts (Å) in the title compound
| H4⋯C13 | 2.67 | −1 + |
| H8⋯O1 | 2.56 | − |
| H7⋯N3 | 2.78 | − |
| Br1⋯O2 | 3.137 (2) | − |
| Br1⋯H14 | 2.98 |
|
| Br2⋯H13 | 3.15 |
|
| Br3⋯H10 | 3.02 |
|
| C13⋯Br3 | 3.569 (2) | 2 − |
Figure 5(a) Front and (b) back views of the three-dimensional Hirshfeld surface of the title compound plotted over d norm in the range −0.1471 to 1.1715 a.u.
Figure 6The full two-dimensional fingerprint plots for the title compound, showing (a) all interactions, and delineated into (b) Br⋯H/H⋯Br, (c) H⋯H, (d) C⋯H/H⋯C, and (e) O⋯H/H⋯O interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface.
Experimental details
| Crystal data | |
| Chemical formula | C14H8Br3N3O2 |
|
| 489.96 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 6.6579 (1), 15.7683 (3), 29.0301 (6) |
|
| 3047.69 (10) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 7.95 |
| Crystal size (mm) | 0.34 × 0.06 × 0.05 |
| Data collection | |
| Diffractometer | Bruker AXS D8 QUEST, Photon III detector |
| Absorption correction | Multi-scan ( |
|
| 0.020, 0.058 |
| No. of measured, independent and observed [ | 67179, 5538, 4620 |
|
| 0.033 |
| (sin θ/λ)max (Å−1) | 0.758 |
| Refinement | |
|
| 0.024, 0.064, 1.05 |
| No. of reflections | 5538 |
| No. of parameters | 199 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.68, −0.52 |
Computer programs: APEX3 and SAINT (Bruker, 2018 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2020 ▸).
| C14H8Br3N3O2 | |
| Mo | |
| Orthorhombic, | Cell parameters from 9783 reflections |
| θ = 2.7–34.8° | |
| µ = 7.95 mm−1 | |
| Needle, red | |
| 0.34 × 0.06 × 0.05 mm | |
| Bruker AXS D8 QUEST, Photon III detector diffractometer | 5538 independent reflections |
| Radiation source: fine-focus sealed X-Ray tube | 4620 reflections with |
| Graphite monochromator | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 32.6°, θmin = 2.6° |
| φ and ω shutterless scans | |
| Absorption correction: multi-scan (SADABS; Krause | |
| 67179 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5538 reflections | (Δ/σ)max = 0.002 |
| 199 parameters | Δρmax = 0.68 e Å−3 |
| 0 restraints | Δρmin = −0.52 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | −0.15339 (3) | 0.13530 (2) | 0.34586 (2) | 0.02722 (5) | |
| Br2 | 0.15481 (3) | 0.10023 (2) | 0.42549 (2) | 0.02936 (5) | |
| Br3 | 1.20530 (3) | 0.41027 (2) | 0.48664 (2) | 0.02853 (5) | |
| O1 | −0.0475 (3) | 0.54340 (9) | 0.25282 (6) | 0.0379 (3) | |
| O2 | 0.0602 (3) | 0.54406 (9) | 0.32311 (5) | 0.0353 (3) | |
| N1 | 0.0276 (2) | 0.50824 (10) | 0.28639 (6) | 0.0272 (3) | |
| N2 | 0.3641 (2) | 0.25393 (10) | 0.38915 (6) | 0.0238 (3) | |
| N3 | 0.4595 (2) | 0.31953 (10) | 0.37700 (5) | 0.0237 (3) | |
| C1 | 0.0855 (3) | 0.16829 (11) | 0.37477 (6) | 0.0238 (3) | |
| C2 | 0.1967 (3) | 0.23522 (11) | 0.36103 (6) | 0.0226 (3) | |
| C3 | 0.1509 (2) | 0.28572 (11) | 0.31884 (6) | 0.0215 (3) | |
| C4 | 0.1146 (3) | 0.37242 (11) | 0.32230 (6) | 0.0221 (3) | |
| H4 | 0.115991 | 0.400016 | 0.351386 | 0.027* | |
| C5 | 0.0763 (3) | 0.41751 (11) | 0.28225 (6) | 0.0224 (3) | |
| C6 | 0.0770 (3) | 0.38058 (12) | 0.23897 (6) | 0.0236 (3) | |
| H6 | 0.050338 | 0.413167 | 0.212131 | 0.028* | |
| C7 | 0.1178 (3) | 0.29485 (13) | 0.23606 (6) | 0.0250 (3) | |
| H7 | 0.121139 | 0.268071 | 0.206755 | 0.030* | |
| C8 | 0.1540 (3) | 0.24729 (11) | 0.27555 (6) | 0.0228 (3) | |
| H8 | 0.180911 | 0.188307 | 0.273038 | 0.027* | |
| C9 | 0.6294 (3) | 0.33715 (12) | 0.40511 (6) | 0.0233 (3) | |
| C10 | 0.7117 (3) | 0.27990 (12) | 0.43672 (7) | 0.0254 (3) | |
| H10 | 0.650813 | 0.226090 | 0.441376 | 0.030* | |
| C11 | 0.8820 (3) | 0.30204 (12) | 0.46115 (7) | 0.0267 (3) | |
| H11 | 0.940184 | 0.263540 | 0.482488 | 0.032* | |
| C12 | 0.9671 (3) | 0.38174 (12) | 0.45398 (6) | 0.0239 (3) | |
| C13 | 0.8856 (3) | 0.43973 (12) | 0.42367 (6) | 0.0257 (3) | |
| H13 | 0.944333 | 0.494183 | 0.419849 | 0.031* | |
| C14 | 0.7154 (3) | 0.41659 (12) | 0.39883 (6) | 0.0248 (3) | |
| H14 | 0.657723 | 0.455267 | 0.377500 | 0.030* |
| Br1 | 0.02466 (8) | 0.02296 (8) | 0.03404 (10) | −0.00303 (6) | −0.00384 (7) | 0.00397 (7) |
| Br2 | 0.02669 (9) | 0.02915 (9) | 0.03225 (10) | 0.00022 (7) | −0.00123 (7) | 0.01012 (7) |
| Br3 | 0.02656 (9) | 0.02931 (9) | 0.02972 (9) | −0.00397 (7) | −0.00470 (7) | 0.00276 (7) |
| O1 | 0.0417 (9) | 0.0284 (7) | 0.0437 (9) | 0.0056 (6) | −0.0074 (7) | 0.0110 (7) |
| O2 | 0.0422 (8) | 0.0260 (7) | 0.0378 (8) | 0.0048 (6) | 0.0005 (7) | −0.0047 (6) |
| N1 | 0.0234 (7) | 0.0231 (7) | 0.0352 (8) | 0.0012 (6) | 0.0018 (6) | 0.0035 (6) |
| N2 | 0.0218 (6) | 0.0251 (7) | 0.0246 (7) | −0.0002 (5) | 0.0002 (6) | 0.0006 (6) |
| N3 | 0.0220 (6) | 0.0243 (7) | 0.0248 (7) | 0.0003 (5) | −0.0002 (5) | 0.0003 (6) |
| C1 | 0.0222 (7) | 0.0227 (7) | 0.0264 (8) | 0.0017 (6) | −0.0009 (6) | 0.0028 (6) |
| C2 | 0.0223 (7) | 0.0222 (7) | 0.0232 (8) | 0.0019 (6) | −0.0003 (6) | 0.0003 (6) |
| C3 | 0.0188 (7) | 0.0219 (7) | 0.0237 (8) | 0.0000 (6) | 0.0000 (6) | 0.0010 (6) |
| C4 | 0.0212 (7) | 0.0215 (7) | 0.0237 (8) | 0.0007 (6) | 0.0006 (6) | 0.0006 (6) |
| C5 | 0.0185 (7) | 0.0214 (7) | 0.0274 (8) | 0.0001 (6) | 0.0003 (6) | 0.0016 (6) |
| C6 | 0.0177 (7) | 0.0290 (8) | 0.0242 (8) | −0.0007 (6) | 0.0004 (6) | 0.0036 (6) |
| C7 | 0.0210 (7) | 0.0307 (9) | 0.0232 (8) | −0.0013 (6) | 0.0006 (6) | −0.0031 (7) |
| C8 | 0.0200 (7) | 0.0223 (7) | 0.0262 (8) | −0.0001 (6) | −0.0013 (6) | −0.0026 (6) |
| C9 | 0.0235 (7) | 0.0235 (8) | 0.0230 (8) | 0.0007 (6) | 0.0002 (6) | −0.0008 (6) |
| C10 | 0.0245 (8) | 0.0241 (8) | 0.0275 (8) | −0.0015 (6) | −0.0015 (7) | 0.0032 (7) |
| C11 | 0.0274 (8) | 0.0252 (8) | 0.0275 (9) | 0.0002 (7) | −0.0035 (7) | 0.0030 (7) |
| C12 | 0.0225 (7) | 0.0263 (8) | 0.0227 (8) | −0.0011 (6) | −0.0006 (6) | −0.0012 (6) |
| C13 | 0.0281 (8) | 0.0232 (8) | 0.0259 (8) | −0.0024 (7) | −0.0004 (7) | 0.0004 (6) |
| C14 | 0.0266 (8) | 0.0235 (8) | 0.0244 (8) | 0.0014 (6) | −0.0004 (6) | 0.0028 (6) |
| Br1—C1 | 1.8723 (18) | C6—C7 | 1.381 (3) |
| Br2—C1 | 1.8796 (18) | C6—H6 | 0.9500 |
| Br3—C12 | 1.9016 (18) | C7—C8 | 1.391 (3) |
| O1—N1 | 1.227 (2) | C7—H7 | 0.9500 |
| O2—N1 | 1.226 (2) | C8—H8 | 0.9500 |
| N1—C5 | 1.472 (2) | C9—C14 | 1.389 (3) |
| N2—N3 | 1.264 (2) | C9—C10 | 1.399 (3) |
| N2—C2 | 1.413 (2) | C10—C11 | 1.382 (3) |
| N3—C9 | 1.422 (2) | C10—H10 | 0.9500 |
| C1—C2 | 1.349 (2) | C11—C12 | 1.394 (3) |
| C2—C3 | 1.493 (2) | C11—H11 | 0.9500 |
| C3—C4 | 1.392 (2) | C12—C13 | 1.380 (3) |
| C3—C8 | 1.395 (3) | C13—C14 | 1.392 (3) |
| C4—C5 | 1.386 (2) | C13—H13 | 0.9500 |
| C4—H4 | 0.9500 | C14—H14 | 0.9500 |
| C5—C6 | 1.385 (3) | ||
| O2—N1—O1 | 123.67 (17) | C6—C7—H7 | 119.6 |
| O2—N1—C5 | 118.68 (16) | C8—C7—H7 | 119.6 |
| O1—N1—C5 | 117.64 (17) | C7—C8—C3 | 120.37 (17) |
| N3—N2—C2 | 113.96 (15) | C7—C8—H8 | 119.8 |
| N2—N3—C9 | 113.53 (15) | C3—C8—H8 | 119.8 |
| C2—C1—Br1 | 123.43 (14) | C14—C9—C10 | 120.46 (17) |
| C2—C1—Br2 | 122.92 (14) | C14—C9—N3 | 115.35 (16) |
| Br1—C1—Br2 | 113.64 (9) | C10—C9—N3 | 124.18 (17) |
| C1—C2—N2 | 115.18 (16) | C11—C10—C9 | 119.65 (17) |
| C1—C2—C3 | 123.21 (16) | C11—C10—H10 | 120.2 |
| N2—C2—C3 | 121.60 (15) | C9—C10—H10 | 120.2 |
| C4—C3—C8 | 119.61 (16) | C10—C11—C12 | 118.98 (17) |
| C4—C3—C2 | 120.02 (16) | C10—C11—H11 | 120.5 |
| C8—C3—C2 | 120.30 (16) | C12—C11—H11 | 120.5 |
| C5—C4—C3 | 118.36 (17) | C13—C12—C11 | 122.18 (17) |
| C5—C4—H4 | 120.8 | C13—C12—Br3 | 119.28 (14) |
| C3—C4—H4 | 120.8 | C11—C12—Br3 | 118.53 (14) |
| C6—C5—C4 | 122.99 (17) | C12—C13—C14 | 118.48 (17) |
| C6—C5—N1 | 118.92 (16) | C12—C13—H13 | 120.8 |
| C4—C5—N1 | 118.07 (16) | C14—C13—H13 | 120.8 |
| C7—C6—C5 | 117.88 (17) | C9—C14—C13 | 120.23 (17) |
| C7—C6—H6 | 121.1 | C9—C14—H14 | 119.9 |
| C5—C6—H6 | 121.1 | C13—C14—H14 | 119.9 |
| C6—C7—C8 | 120.75 (17) | ||
| C2—N2—N3—C9 | −179.14 (15) | C4—C5—C6—C7 | 0.1 (3) |
| Br1—C1—C2—N2 | 175.57 (13) | N1—C5—C6—C7 | −178.28 (16) |
| Br2—C1—C2—N2 | −3.5 (2) | C5—C6—C7—C8 | 0.9 (3) |
| Br1—C1—C2—C3 | −5.5 (3) | C6—C7—C8—C3 | −0.4 (3) |
| Br2—C1—C2—C3 | 175.44 (13) | C4—C3—C8—C7 | −1.0 (3) |
| N3—N2—C2—C1 | −176.40 (16) | C2—C3—C8—C7 | −177.89 (16) |
| N3—N2—C2—C3 | 4.6 (2) | N2—N3—C9—C14 | −168.04 (16) |
| C1—C2—C3—C4 | 121.4 (2) | N2—N3—C9—C10 | 13.1 (3) |
| N2—C2—C3—C4 | −59.7 (2) | C14—C9—C10—C11 | −1.3 (3) |
| C1—C2—C3—C8 | −61.7 (2) | N3—C9—C10—C11 | 177.51 (18) |
| N2—C2—C3—C8 | 117.13 (19) | C9—C10—C11—C12 | 0.6 (3) |
| C8—C3—C4—C5 | 1.9 (2) | C10—C11—C12—C13 | 0.8 (3) |
| C2—C3—C4—C5 | 178.81 (16) | C10—C11—C12—Br3 | −178.42 (15) |
| C3—C4—C5—C6 | −1.5 (3) | C11—C12—C13—C14 | −1.5 (3) |
| C3—C4—C5—N1 | 176.87 (15) | Br3—C12—C13—C14 | 177.71 (14) |
| O2—N1—C5—C6 | −167.63 (17) | C10—C9—C14—C13 | 0.6 (3) |
| O1—N1—C5—C6 | 13.8 (2) | N3—C9—C14—C13 | −178.32 (17) |
| O2—N1—C5—C4 | 13.9 (2) | C12—C13—C14—C9 | 0.8 (3) |
| O1—N1—C5—C4 | −164.68 (17) |
| H··· | ||||
| C8—H8···O1i | 0.95 | 2.56 | 3.394 (2) | 146 |