| Literature DB >> 35547788 |
Zeliha Atioğlu1, Mehmet Akkurt2, Namiq Q Shikhaliyev3, Naila A Mammadova3, Gulnara V Babayeva3,4, Victor N Khrustalev5,6, Ajaya Bhattarai7.
Abstract
In the title compound, C14H8Br2FN3O2, the 4-fluoro-phenyl ring and the nitro-substituted phenyl ring form a dihedral angle of 64.37 (10)°. Mol-ecules in the crystal are connected by C-H⋯O and C-H⋯F hydrogen bonds into layers parallel to (011). The crystal packing is consolidated by C-Br⋯π and C-F⋯π inter-actions, as well as by π-π stacking inter-actions. According to a Hirshfeld surface analysis of the crystal structure, the most significant contributions to the crystal packing are from O⋯H/H⋯O (15.0%), H⋯H (14.3%), Br⋯H/H⋯Br (14.2%), C⋯H/H⋯C (10.1%), F⋯H/H⋯F (7.9%), Br⋯Br (7.2%) and Br⋯C/C⋯Br (5.8%) contacts. © Atioğlu et al. 2022.Entities:
Keywords: C—Br⋯π interactions; C—F⋯π interactions; C—H⋯F hydrogen bonds; C—H⋯O hydrogen bonds; Hirshfeld surface analysis; crystal structure; π–π stacking interactions
Year: 2022 PMID: 35547788 PMCID: PMC9069519 DOI: 10.1107/S2056989022004388
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The title molecule with the labelling scheme and displacement ellipsoids drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4⋯O2i | 0.95 | 2.47 | 3.331 (3) | 151 |
| C5—H5⋯F1ii | 0.95 | 2.54 | 3.150 (3) | 122 |
| C11—H11⋯O2iii | 0.95 | 2.58 | 3.367 (3) | 140 |
| C14—H14⋯F1iv | 0.95 | 2.49 | 3.427 (3) | 169 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 2View down [100] of the C—H⋯O and C—H⋯F interactions (dashed lines) in the title compound.
Figure 3View down [010] of the C—H⋯O and C—H⋯F interactions (dashed lines) in the title compound.
Figure 4View down [001] of the C—H⋯O and C—H⋯F interactions (dashed lines) in the title compound.
Figure 5View down [100] of the title compound, showing the molecular packing including C—Br⋯π and C—F⋯π interactions, as well as π–π interactions.
Figure 6View down [010] of the title compound, showing the molecular packing including C—Br⋯π and C—F⋯π interactions, as well as π–π interactions.
Figure 7View down [001] of the title compound, showing the molecular packing including C—Br⋯π and C—F⋯π interactions, as well as π–π interactions.
Figure 8View of the three-dimensional Hirshfeld surface of the title compound plotted over d norm in the range −0.1845 to 1.1463 a.u.
Figure 9View of the three-dimensional Hirshfeld surface of the title complex plotted over electrostatic potential energy in the range −0.0500 to 0.0500 a.u. using the STO-3 G basis set at the Hartree–Fock level of theory. The hydrogen-bond donor and acceptor groups are viewed as blue and red regions, respectively around the atoms, corresponding to positive and negative potentials.
Figure 10The full two-dimensional fingerprint plots for the title compound, showing (a) all interactions, and delineated into (b) O⋯H / H⋯O, (c) H⋯H, (d) Br⋯H / H⋯Br, (e) C⋯H / H⋯C, (f) F⋯H / H⋯F, (g) Br⋯Br and (h) Br⋯C / C⋯Br interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface.
Summary of short interatomic contacts (Å) in the title compound
| Contact | Distance | Symmetry operation |
|---|---|---|
| C1⋯Br2 | 3.6060 | − |
| Br1⋯Br1 | 3.7247 | − |
| H4⋯O2 | 2.47 |
|
| H7⋯Br2 | 3.08 | − |
| F1⋯H5 | 2.54 | 1 − |
| C12⋯F1 | 3.3310 | 1 − |
| H14⋯F1 | 2.49 |
|
| O2⋯H11 | 2.58 |
|
| H13⋯O2 | 2.69 | 1 − |
| C12⋯C12 | 3.5050 | 1 − |
Percentage contributions of interatomic contacts to the Hirshfeld surface for the title compound
| Contact | Percentage contribution |
|---|---|
| O⋯H/H⋯O | 15.0 |
| H⋯H | 14.3 |
| Br⋯H/H⋯Br | 14.2 |
| C⋯H/H⋯C | 10.1 |
| F⋯H/H⋯F | 7.9 |
| Br⋯Br | 7.2 |
| Br.·C/C⋯Br | 5.8 |
| N⋯H/H⋯N | 5.7 |
| C⋯C | 4.2 |
| O⋯C/C⋯O | 4.0 |
| F⋯C/C⋯F | 3.1 |
| Br.·O/O⋯Br | 2.7 |
| N⋯C/C⋯N | 2.1 |
| N⋯O/O⋯N | 2.0 |
| N⋯N | 1.0 |
| F⋯F | 0.8 |
Experimental details
| Crystal data | |
| Chemical formula | C14H8Br2FN3O2 |
|
| 429.05 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 16.0658 (2), 7.0329 (1), 12.7934 (2) |
| β (°) | 96.8470 (6) |
|
| 1435.21 (4) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 5.67 |
| Crystal size (mm) | 0.37 × 0.21 × 0.08 |
| Data collection | |
| Diffractometer | Bruker AXS D8 QUEST, Photon III detector |
| Absorption correction | Multi-scan ( |
|
| 0.415, 0.747 |
| No. of measured, independent and observed [ | 44165, 4177, 3809 |
|
| 0.102 |
| (sin θ/λ)max (Å−1) | 0.703 |
| Refinement | |
|
| 0.034, 0.096, 1.05 |
| No. of reflections | 4177 |
| No. of parameters | 199 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 2.00, −1.04 |
Computer programs: APEX3 and SAINT (Bruker, 2018 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2020 ▸).
| C14H8Br2FN3O2 | |
| Monoclinic, | Mo |
| Cell parameters from 9926 reflections | |
| θ = 3.2–33.2° | |
| µ = 5.67 mm−1 | |
| β = 96.8470 (6)° | |
| Plate, light red | |
| 0.37 × 0.21 × 0.08 mm |
| Bruker AXS D8 QUEST, Photon III detector diffractometer | 4177 independent reflections |
| Radiation source: fine-focus sealed X-Ray tube | 3809 reflections with |
| Graphite monochromator | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 30.0°, θmin = 2.6° |
| φ and ω shutterless scans | |
| Absorption correction: multi-scan (SADABS; Krause | |
| 44165 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4177 reflections | (Δ/σ)max < 0.001 |
| 199 parameters | Δρmax = 2.00 e Å−3 |
| 0 restraints | Δρmin = −1.04 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | 0.07857 (2) | 0.35922 (3) | 0.08663 (2) | 0.01718 (8) | |
| Br2 | 0.02778 (2) | 0.28084 (3) | 0.31239 (2) | 0.02246 (8) | |
| C1 | 0.10911 (13) | 0.3752 (3) | 0.23267 (15) | 0.0143 (3) | |
| C2 | 0.18336 (12) | 0.4450 (3) | 0.27612 (15) | 0.0135 (3) | |
| C3 | 0.20411 (12) | 0.4693 (3) | 0.39184 (15) | 0.0131 (3) | |
| C4 | 0.26892 (13) | 0.3653 (3) | 0.44734 (16) | 0.0151 (4) | |
| H4 | 0.301935 | 0.282209 | 0.410651 | 0.018* | |
| C5 | 0.28537 (13) | 0.3827 (3) | 0.55606 (16) | 0.0148 (3) | |
| H5 | 0.329792 | 0.313645 | 0.594394 | 0.018* | |
| C6 | 0.23537 (13) | 0.5033 (3) | 0.60701 (15) | 0.0141 (3) | |
| C7 | 0.17169 (13) | 0.6115 (3) | 0.55419 (16) | 0.0158 (4) | |
| H7 | 0.139047 | 0.694455 | 0.591491 | 0.019* | |
| C8 | 0.15669 (12) | 0.5958 (3) | 0.44533 (15) | 0.0143 (3) | |
| H8 | 0.114268 | 0.670850 | 0.407127 | 0.017* | |
| N1 | 0.24975 (12) | 0.5135 (2) | 0.72236 (14) | 0.0178 (3) | |
| O1 | 0.19544 (12) | 0.5861 (2) | 0.76893 (13) | 0.0259 (3) | |
| O2 | 0.31534 (11) | 0.4454 (2) | 0.76654 (12) | 0.0245 (3) | |
| N2 | 0.23866 (11) | 0.4967 (2) | 0.20300 (13) | 0.0153 (3) | |
| N3 | 0.31074 (11) | 0.5492 (3) | 0.24360 (14) | 0.0165 (3) | |
| C9 | 0.36346 (12) | 0.6039 (3) | 0.16716 (15) | 0.0144 (3) | |
| C10 | 0.33917 (13) | 0.6020 (3) | 0.05795 (16) | 0.0158 (4) | |
| H10 | 0.285307 | 0.556049 | 0.030764 | 0.019* | |
| C11 | 0.39360 (14) | 0.6669 (3) | −0.00982 (16) | 0.0177 (4) | |
| H11 | 0.377788 | 0.667540 | −0.083780 | 0.021* | |
| C12 | 0.47214 (14) | 0.7314 (3) | 0.03294 (17) | 0.0185 (4) | |
| C13 | 0.49862 (14) | 0.7325 (3) | 0.13950 (18) | 0.0203 (4) | |
| H13 | 0.553030 | 0.776322 | 0.165862 | 0.024* | |
| C14 | 0.44330 (14) | 0.6675 (3) | 0.20716 (17) | 0.0186 (4) | |
| H14 | 0.459864 | 0.666418 | 0.280965 | 0.022* | |
| F1 | 0.52527 (9) | 0.7950 (2) | −0.03383 (11) | 0.0261 (3) |
| Br1 | 0.01901 (12) | 0.01931 (12) | 0.01257 (11) | 0.00170 (7) | −0.00084 (8) | −0.00163 (6) |
| Br2 | 0.02126 (13) | 0.02844 (14) | 0.01798 (12) | −0.00940 (8) | 0.00360 (8) | 0.00113 (8) |
| C1 | 0.0179 (9) | 0.0133 (8) | 0.0121 (8) | −0.0006 (7) | 0.0030 (7) | 0.0007 (6) |
| C2 | 0.0173 (8) | 0.0111 (8) | 0.0124 (8) | 0.0016 (6) | 0.0022 (6) | 0.0007 (6) |
| C3 | 0.0144 (8) | 0.0131 (8) | 0.0118 (8) | −0.0003 (6) | 0.0022 (6) | 0.0005 (6) |
| C4 | 0.0176 (9) | 0.0159 (9) | 0.0124 (8) | 0.0025 (7) | 0.0038 (7) | 0.0002 (6) |
| C5 | 0.0165 (8) | 0.0144 (8) | 0.0134 (8) | 0.0000 (7) | 0.0013 (7) | 0.0020 (7) |
| C6 | 0.0196 (9) | 0.0124 (8) | 0.0105 (8) | −0.0044 (7) | 0.0027 (7) | −0.0002 (6) |
| C7 | 0.0197 (9) | 0.0124 (8) | 0.0159 (9) | 0.0001 (7) | 0.0052 (7) | −0.0017 (7) |
| C8 | 0.0156 (8) | 0.0133 (8) | 0.0142 (8) | 0.0016 (7) | 0.0023 (7) | 0.0000 (7) |
| N1 | 0.0269 (9) | 0.0122 (7) | 0.0147 (8) | −0.0054 (6) | 0.0037 (6) | −0.0008 (6) |
| O1 | 0.0394 (9) | 0.0243 (8) | 0.0159 (7) | 0.0010 (7) | 0.0107 (7) | −0.0038 (6) |
| O2 | 0.0325 (9) | 0.0245 (8) | 0.0150 (7) | −0.0041 (7) | −0.0029 (6) | 0.0020 (6) |
| N2 | 0.0182 (8) | 0.0141 (7) | 0.0139 (7) | 0.0018 (6) | 0.0026 (6) | 0.0002 (6) |
| N3 | 0.0192 (8) | 0.0158 (8) | 0.0148 (7) | 0.0010 (6) | 0.0034 (6) | 0.0005 (6) |
| C9 | 0.0172 (9) | 0.0133 (8) | 0.0128 (8) | 0.0019 (7) | 0.0026 (7) | −0.0002 (7) |
| C10 | 0.0179 (9) | 0.0154 (8) | 0.0140 (8) | 0.0004 (7) | 0.0012 (7) | −0.0010 (7) |
| C11 | 0.0212 (9) | 0.0184 (9) | 0.0132 (8) | −0.0013 (8) | 0.0015 (7) | −0.0007 (7) |
| C12 | 0.0194 (9) | 0.0183 (9) | 0.0188 (9) | −0.0006 (7) | 0.0062 (8) | 0.0009 (7) |
| C13 | 0.0168 (9) | 0.0232 (10) | 0.0205 (10) | −0.0025 (8) | 0.0012 (8) | −0.0018 (8) |
| C14 | 0.0198 (9) | 0.0217 (9) | 0.0140 (9) | −0.0006 (8) | 0.0004 (7) | −0.0017 (7) |
| F1 | 0.0239 (7) | 0.0354 (8) | 0.0202 (6) | −0.0064 (6) | 0.0081 (5) | 0.0037 (6) |
| Br1—C1 | 1.878 (2) | N1—O1 | 1.225 (2) |
| Br2—C1 | 1.872 (2) | N1—O2 | 1.232 (3) |
| C1—C2 | 1.347 (3) | N2—N3 | 1.266 (2) |
| C2—N2 | 1.412 (3) | N3—C9 | 1.421 (3) |
| C2—C3 | 1.488 (3) | C9—C14 | 1.397 (3) |
| C3—C4 | 1.395 (3) | C9—C10 | 1.405 (3) |
| C3—C8 | 1.402 (3) | C10—C11 | 1.380 (3) |
| C4—C5 | 1.390 (3) | C10—H10 | 0.9500 |
| C4—H4 | 0.9500 | C11—C12 | 1.390 (3) |
| C5—C6 | 1.384 (3) | C11—H11 | 0.9500 |
| C5—H5 | 0.9500 | C12—F1 | 1.354 (2) |
| C6—C7 | 1.385 (3) | C12—C13 | 1.379 (3) |
| C6—N1 | 1.468 (2) | C13—C14 | 1.390 (3) |
| C7—C8 | 1.389 (3) | C13—H13 | 0.9500 |
| C7—H7 | 0.9500 | C14—H14 | 0.9500 |
| C8—H8 | 0.9500 | ||
| C2—C1—Br2 | 123.06 (15) | O1—N1—O2 | 123.97 (19) |
| C2—C1—Br1 | 123.08 (15) | O1—N1—C6 | 118.25 (18) |
| Br2—C1—Br1 | 113.85 (10) | O2—N1—C6 | 117.77 (17) |
| C1—C2—N2 | 114.61 (17) | N3—N2—C2 | 114.84 (17) |
| C1—C2—C3 | 122.32 (17) | N2—N3—C9 | 112.81 (17) |
| N2—C2—C3 | 123.05 (17) | C14—C9—C10 | 120.10 (19) |
| C4—C3—C8 | 120.02 (18) | C14—C9—N3 | 115.55 (18) |
| C4—C3—C2 | 120.73 (17) | C10—C9—N3 | 124.33 (18) |
| C8—C3—C2 | 119.23 (17) | C11—C10—C9 | 119.98 (19) |
| C5—C4—C3 | 120.28 (18) | C11—C10—H10 | 120.0 |
| C5—C4—H4 | 119.9 | C9—C10—H10 | 120.0 |
| C3—C4—H4 | 119.9 | C10—C11—C12 | 118.29 (19) |
| C6—C5—C4 | 118.27 (18) | C10—C11—H11 | 120.9 |
| C6—C5—H5 | 120.9 | C12—C11—H11 | 120.9 |
| C4—C5—H5 | 120.9 | F1—C12—C13 | 118.6 (2) |
| C5—C6—C7 | 122.93 (18) | F1—C12—C11 | 118.07 (19) |
| C5—C6—N1 | 118.21 (18) | C13—C12—C11 | 123.3 (2) |
| C7—C6—N1 | 118.85 (17) | C12—C13—C14 | 118.0 (2) |
| C6—C7—C8 | 118.38 (18) | C12—C13—H13 | 121.0 |
| C6—C7—H7 | 120.8 | C14—C13—H13 | 121.0 |
| C8—C7—H7 | 120.8 | C13—C14—C9 | 120.3 (2) |
| C7—C8—C3 | 120.04 (18) | C13—C14—H14 | 119.8 |
| C7—C8—H8 | 120.0 | C9—C14—H14 | 119.8 |
| C3—C8—H8 | 120.0 | ||
| Br2—C1—C2—N2 | 175.66 (13) | C7—C6—N1—O1 | 14.3 (3) |
| Br1—C1—C2—N2 | −3.1 (3) | C5—C6—N1—O2 | 14.4 (3) |
| Br2—C1—C2—C3 | −5.6 (3) | C7—C6—N1—O2 | −166.82 (18) |
| Br1—C1—C2—C3 | 175.56 (14) | C1—C2—N2—N3 | −175.03 (18) |
| C1—C2—C3—C4 | 115.8 (2) | C3—C2—N2—N3 | 6.3 (3) |
| N2—C2—C3—C4 | −65.7 (3) | C2—N2—N3—C9 | −178.63 (16) |
| C1—C2—C3—C8 | −63.1 (3) | N2—N3—C9—C14 | 178.57 (18) |
| N2—C2—C3—C8 | 115.5 (2) | N2—N3—C9—C10 | 0.4 (3) |
| C8—C3—C4—C5 | 1.7 (3) | C14—C9—C10—C11 | −1.4 (3) |
| C2—C3—C4—C5 | −177.12 (18) | N3—C9—C10—C11 | 176.7 (2) |
| C3—C4—C5—C6 | 0.8 (3) | C9—C10—C11—C12 | 0.6 (3) |
| C4—C5—C6—C7 | −2.1 (3) | C10—C11—C12—F1 | −179.95 (19) |
| C4—C5—C6—N1 | 176.62 (18) | C10—C11—C12—C13 | 0.5 (3) |
| C5—C6—C7—C8 | 1.0 (3) | F1—C12—C13—C14 | 179.7 (2) |
| N1—C6—C7—C8 | −177.77 (17) | C11—C12—C13—C14 | −0.7 (3) |
| C6—C7—C8—C3 | 1.5 (3) | C12—C13—C14—C9 | −0.1 (3) |
| C4—C3—C8—C7 | −2.9 (3) | C10—C9—C14—C13 | 1.2 (3) |
| C2—C3—C8—C7 | 175.96 (18) | N3—C9—C14—C13 | −177.1 (2) |
| C5—C6—N1—O1 | −164.51 (19) |
| H··· | ||||
| C4—H4···O2i | 0.95 | 2.47 | 3.331 (3) | 151 |
| C5—H5···F1ii | 0.95 | 2.54 | 3.150 (3) | 122 |
| C11—H11···O2iii | 0.95 | 2.58 | 3.367 (3) | 140 |
| C14—H14···F1iv | 0.95 | 2.49 | 3.427 (3) | 169 |