| Literature DB >> 35492284 |
Sevim Türktekin Çelikesir1, Mehmet Akkurt1, Namiq Q Shikhaliyev2, Naila A Mammadova2, Gulnar T Suleymanova2, Victor N Khrustalev3,4, Ajaya Bhattarai5.
Abstract
In the title compound, C14H8Br2FN3O2, the nitro-substituted benzene ring and the 4-fluoro-phenyl ring form a dihedral angle of 65.73 (7)°. In the crystal, mol-ecules are linked into chains by C-H⋯O hydrogen bonds running parallel to the c-axis direction. The crystal packing is consolidated by C-F⋯π inter-actions and π-π stacking inter-actions, and short Br⋯O [2.9828 (13) Å] contacts are observed. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (17.4%), O⋯H/H⋯O (16.3%), Br⋯H/H⋯Br (15.5%), Br⋯C/C⋯Br (10.1%) and F⋯H/H⋯F (8.1%) contacts. © Çelikesir et al. 2022.Entities:
Keywords: C—F⋯π interaction; Hirshfeld surface analysis; crystal structure; π–π stacking interaction
Year: 2022 PMID: 35492284 PMCID: PMC8983971 DOI: 10.1107/S205698902200278X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C6—H6⋯O1i | 0.95 | 2.51 | 3.3244 (18) | 144 |
Symmetry code: (i) .
Figure 2View of the C—H⋯O, C—F⋯π and π–π stacking interactions in the title compound.
Figure 3The three-dimensional Hirshfeld surface of the title compound plotted over d norm in the range −0.24 to 1.44 a.u.
Summary of short interatomic contacts (Å) in the title salt
| Contact | Distance | Symmetry operation |
|---|---|---|
| H8⋯Br1 | 2.99 | 1 − |
| O1⋯H11 | 2.68 |
|
| Br1⋯Br2 | 3.6164 |
|
| H7⋯Br2 | 3.19 | 1 − |
| H13⋯F1 | 2.82 | 1 − |
| F1⋯H10 | 2.67 |
|
| O1⋯H6 | 2.51 |
|
| O2⋯H8 | 2.77 |
|
| H7⋯H6 | 2.47 | 1 − |
Figure 4The full two-dimensional fingerprint plot (a) for the title compound and those delineated into (b) H⋯H (17.4%), (c) O⋯H/H⋯O (16.3%), (d) Br⋯H/H⋯Br (15.5%), (e) Br⋯C/C⋯Br (10.1%) and (f) F⋯H/H⋯F (8.1%) interactions.
Percentage contributions of interatomic contacts to the Hirshfeld surface for the title salt
| Contact | Percentage contribution |
|---|---|
| H⋯H | 17.4 |
| O⋯H/H⋯O | 16.3 |
| Br⋯H/H⋯Br | 15.5 |
| Br.·C/C⋯Br | 10.1 |
| F⋯H/H⋯F | 8.1 |
| C⋯H/H⋯C | 7.0 |
| N⋯H/H⋯N | 5.5 |
| C⋯C | 4.7 |
| Br.·O/O⋯Br | 4.2 |
| F⋯C/C⋯F | 3.5 |
| Br⋯Br | 3.1 |
| N⋯C/C⋯N | 1.4 |
| Br⋯F/F⋯Br | 1.1 |
| N⋯N | 0.9 |
| O⋯C/C⋯O | 0.1 |
| F⋯O/O⋯F | 0.6 |
| F⋯N/N⋯F | 0.5 |
Experimental details
| Crystal data | |
| Chemical formula | C14H8Br2FN3O2 |
|
| 429.05 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 14.8700 (4), 15.2915 (4), 13.1030 (4) |
|
| 2979.42 (14) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 5.46 |
| Crystal size (mm) | 0.59 × 0.26 × 0.20 |
| Data collection | |
| Diffractometer | Bruker AXS D8 QUEST Photon III detector |
| Absorption correction | Multi-scan ( |
|
| 0.047, 0.115 |
| No. of measured, independent and observed [ | 87568, 5429, 4773 |
|
| 0.041 |
| (sin θ/λ)max (Å−1) | 0.758 |
| Refinement | |
|
| 0.023, 0.057, 1.06 |
| No. of reflections | 5429 |
| No. of parameters | 199 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.83, −0.46 |
Computer programs: APEX3 and SAINT (Bruker, 2018 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2020 ▸).
| C14H8Br2FN3O2 | |
| Mo | |
| Orthorhombic, | Cell parameters from 9970 reflections |
| θ = 2.5–34.3° | |
| µ = 5.46 mm−1 | |
| Block, light orange | |
| 0.59 × 0.26 × 0.20 mm | |
| Bruker AXS D8 QUEST Photon III detector diffractometer | 5429 independent reflections |
| Radiation source: fine-focus sealed X-Ray tube | 4773 reflections with |
| Graphite monochromator | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 32.6°, θmin = 2.5° |
| φ and ω shutterless scans | |
| Absorption correction: multi-scan (SADABS; Krause | |
| 87568 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5429 reflections | (Δ/σ)max = 0.005 |
| 199 parameters | Δρmax = 0.83 e Å−3 |
| 0 restraints | Δρmin = −0.46 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Br1 | 0.62265 (2) | 0.95963 (2) | 0.16792 (2) | 0.02193 (4) | |
| Br2 | 0.64744 (2) | 1.02154 (2) | 0.39424 (2) | 0.02154 (4) | |
| F1 | 0.61074 (8) | 0.42468 (7) | 0.03550 (8) | 0.0350 (2) | |
| O1 | 0.79994 (8) | 0.81157 (8) | 0.37024 (8) | 0.0279 (2) | |
| O2 | 0.82768 (8) | 0.70323 (8) | 0.47212 (9) | 0.0279 (2) | |
| N1 | 0.78022 (8) | 0.76388 (8) | 0.44249 (9) | 0.0204 (2) | |
| N2 | 0.61421 (8) | 0.77830 (8) | 0.26409 (9) | 0.0173 (2) | |
| N3 | 0.61871 (8) | 0.70235 (8) | 0.30197 (9) | 0.0180 (2) | |
| C1 | 0.62788 (9) | 0.92776 (9) | 0.30578 (10) | 0.0172 (2) | |
| C2 | 0.62325 (9) | 0.84437 (9) | 0.33887 (9) | 0.0163 (2) | |
| C3 | 0.62473 (9) | 0.82188 (9) | 0.44946 (10) | 0.0160 (2) | |
| C4 | 0.69718 (9) | 0.78201 (9) | 0.49868 (10) | 0.0167 (2) | |
| C5 | 0.69526 (10) | 0.75800 (9) | 0.60064 (10) | 0.0198 (2) | |
| H5 | 0.745761 | 0.730610 | 0.631466 | 0.024* | |
| C6 | 0.61793 (10) | 0.77479 (10) | 0.65687 (10) | 0.0216 (3) | |
| H6 | 0.615605 | 0.760257 | 0.727309 | 0.026* | |
| C7 | 0.54428 (10) | 0.81279 (10) | 0.60985 (10) | 0.0221 (3) | |
| H7 | 0.491119 | 0.823434 | 0.648092 | 0.026* | |
| C8 | 0.54741 (10) | 0.83559 (9) | 0.50689 (10) | 0.0195 (2) | |
| H8 | 0.495992 | 0.860845 | 0.475544 | 0.023* | |
| C9 | 0.61222 (9) | 0.63404 (9) | 0.22921 (10) | 0.0173 (2) | |
| C10 | 0.62860 (10) | 0.55039 (9) | 0.26748 (11) | 0.0214 (3) | |
| H10 | 0.640277 | 0.542361 | 0.338142 | 0.026* | |
| C11 | 0.62783 (11) | 0.47892 (10) | 0.20219 (13) | 0.0253 (3) | |
| H11 | 0.639299 | 0.421601 | 0.226931 | 0.030* | |
| C12 | 0.60996 (11) | 0.49353 (11) | 0.10055 (12) | 0.0245 (3) | |
| C13 | 0.59060 (10) | 0.57525 (10) | 0.06081 (11) | 0.0224 (3) | |
| H13 | 0.577105 | 0.582364 | −0.009565 | 0.027* | |
| C14 | 0.59139 (10) | 0.64622 (9) | 0.12606 (10) | 0.0194 (2) | |
| H14 | 0.577851 | 0.703011 | 0.101002 | 0.023* |
| Br1 | 0.02940 (8) | 0.02164 (7) | 0.01475 (6) | −0.00253 (5) | −0.00260 (5) | 0.00271 (5) |
| Br2 | 0.02785 (8) | 0.01832 (7) | 0.01843 (6) | −0.00056 (5) | 0.00111 (5) | −0.00383 (5) |
| F1 | 0.0542 (7) | 0.0220 (5) | 0.0287 (5) | 0.0035 (5) | −0.0047 (4) | −0.0101 (4) |
| O1 | 0.0232 (5) | 0.0403 (6) | 0.0201 (5) | 0.0021 (5) | 0.0046 (4) | 0.0009 (4) |
| O2 | 0.0267 (5) | 0.0279 (6) | 0.0292 (6) | 0.0120 (5) | −0.0039 (4) | −0.0073 (4) |
| N1 | 0.0184 (5) | 0.0245 (6) | 0.0183 (5) | 0.0033 (5) | −0.0014 (4) | −0.0066 (4) |
| N2 | 0.0197 (5) | 0.0170 (5) | 0.0152 (5) | 0.0005 (4) | 0.0008 (4) | −0.0012 (4) |
| N3 | 0.0200 (5) | 0.0178 (5) | 0.0161 (5) | 0.0002 (4) | 0.0002 (4) | −0.0008 (4) |
| C1 | 0.0205 (6) | 0.0179 (6) | 0.0134 (5) | 0.0009 (5) | 0.0000 (4) | −0.0017 (4) |
| C2 | 0.0170 (5) | 0.0182 (6) | 0.0136 (5) | 0.0015 (5) | 0.0003 (4) | −0.0012 (4) |
| C3 | 0.0185 (6) | 0.0154 (5) | 0.0140 (5) | 0.0012 (5) | −0.0003 (4) | −0.0006 (4) |
| C4 | 0.0181 (6) | 0.0160 (5) | 0.0161 (5) | 0.0014 (5) | −0.0004 (4) | −0.0026 (4) |
| C5 | 0.0236 (6) | 0.0192 (6) | 0.0166 (5) | 0.0031 (5) | −0.0031 (5) | −0.0001 (4) |
| C6 | 0.0278 (7) | 0.0218 (6) | 0.0151 (5) | 0.0021 (5) | 0.0006 (5) | 0.0022 (5) |
| C7 | 0.0235 (7) | 0.0262 (7) | 0.0165 (6) | 0.0037 (5) | 0.0046 (5) | 0.0027 (5) |
| C8 | 0.0192 (6) | 0.0229 (6) | 0.0162 (5) | 0.0036 (5) | 0.0011 (4) | 0.0022 (5) |
| C9 | 0.0183 (6) | 0.0173 (6) | 0.0162 (5) | 0.0002 (5) | 0.0001 (4) | −0.0007 (4) |
| C10 | 0.0258 (7) | 0.0192 (6) | 0.0191 (6) | 0.0013 (5) | −0.0022 (5) | 0.0009 (5) |
| C11 | 0.0321 (8) | 0.0180 (6) | 0.0259 (7) | 0.0029 (6) | −0.0028 (6) | −0.0009 (5) |
| C12 | 0.0289 (7) | 0.0213 (6) | 0.0232 (7) | 0.0004 (6) | −0.0013 (5) | −0.0063 (5) |
| C13 | 0.0273 (7) | 0.0225 (7) | 0.0175 (6) | −0.0003 (6) | −0.0012 (5) | −0.0027 (5) |
| C14 | 0.0224 (6) | 0.0189 (6) | 0.0168 (5) | −0.0006 (5) | 0.0001 (5) | 0.0001 (4) |
| Br1—C1 | 1.8725 (13) | C6—C7 | 1.384 (2) |
| Br2—C1 | 1.8667 (13) | C6—H6 | 0.9500 |
| F1—C12 | 1.3546 (17) | C7—C8 | 1.3942 (18) |
| O1—N1 | 1.2304 (17) | C7—H7 | 0.9500 |
| O2—N1 | 1.2284 (16) | C8—H8 | 0.9500 |
| N1—C4 | 1.4641 (18) | C9—C10 | 1.3953 (19) |
| N2—N3 | 1.2647 (16) | C9—C14 | 1.3992 (19) |
| N2—C2 | 1.4138 (17) | C10—C11 | 1.388 (2) |
| N3—C9 | 1.4175 (17) | C10—H10 | 0.9500 |
| C1—C2 | 1.3486 (19) | C11—C12 | 1.376 (2) |
| C2—C3 | 1.4895 (18) | C11—H11 | 0.9500 |
| C3—C8 | 1.3900 (19) | C12—C13 | 1.384 (2) |
| C3—C4 | 1.3958 (18) | C13—C14 | 1.382 (2) |
| C4—C5 | 1.3859 (18) | C13—H13 | 0.9500 |
| C5—C6 | 1.390 (2) | C14—H14 | 0.9500 |
| C5—H5 | 0.9500 | ||
| O2—N1—O1 | 123.62 (13) | C6—C7—H7 | 119.7 |
| O2—N1—C4 | 117.94 (13) | C8—C7—H7 | 119.7 |
| O1—N1—C4 | 118.41 (12) | C3—C8—C7 | 120.92 (13) |
| N3—N2—C2 | 112.28 (11) | C3—C8—H8 | 119.5 |
| N2—N3—C9 | 114.15 (11) | C7—C8—H8 | 119.5 |
| C2—C1—Br2 | 122.32 (10) | C10—C9—C14 | 120.52 (13) |
| C2—C1—Br1 | 123.65 (10) | C10—C9—N3 | 114.96 (12) |
| Br2—C1—Br1 | 113.92 (7) | C14—C9—N3 | 124.52 (12) |
| C1—C2—N2 | 117.24 (12) | C11—C10—C9 | 119.93 (14) |
| C1—C2—C3 | 122.03 (12) | C11—C10—H10 | 120.0 |
| N2—C2—C3 | 120.71 (12) | C9—C10—H10 | 120.0 |
| C8—C3—C4 | 117.01 (12) | C12—C11—C10 | 118.05 (14) |
| C8—C3—C2 | 118.66 (12) | C12—C11—H11 | 121.0 |
| C4—C3—C2 | 124.19 (12) | C10—C11—H11 | 121.0 |
| C5—C4—C3 | 123.04 (13) | F1—C12—C11 | 118.75 (14) |
| C5—C4—N1 | 116.88 (12) | F1—C12—C13 | 117.83 (13) |
| C3—C4—N1 | 120.08 (12) | C11—C12—C13 | 123.42 (14) |
| C4—C5—C6 | 118.63 (13) | C14—C13—C12 | 118.34 (13) |
| C4—C5—H5 | 120.7 | C14—C13—H13 | 120.8 |
| C6—C5—H5 | 120.7 | C12—C13—H13 | 120.8 |
| C7—C6—C5 | 119.75 (12) | C13—C14—C9 | 119.68 (13) |
| C7—C6—H6 | 120.1 | C13—C14—H14 | 120.2 |
| C5—C6—H6 | 120.1 | C9—C14—H14 | 120.2 |
| C6—C7—C8 | 120.61 (13) | ||
| C2—N2—N3—C9 | −178.50 (11) | C3—C4—C5—C6 | −0.4 (2) |
| Br2—C1—C2—N2 | −175.87 (9) | N1—C4—C5—C6 | 179.45 (13) |
| Br1—C1—C2—N2 | 0.19 (18) | C4—C5—C6—C7 | 1.6 (2) |
| Br2—C1—C2—C3 | 5.92 (19) | C5—C6—C7—C8 | −1.0 (2) |
| Br1—C1—C2—C3 | −178.02 (10) | C4—C3—C8—C7 | 2.0 (2) |
| N3—N2—C2—C1 | 173.96 (13) | C2—C3—C8—C7 | 177.74 (13) |
| N3—N2—C2—C3 | −7.80 (18) | C6—C7—C8—C3 | −0.9 (2) |
| C1—C2—C3—C8 | 75.95 (18) | N2—N3—C9—C10 | 172.10 (13) |
| N2—C2—C3—C8 | −102.20 (16) | N2—N3—C9—C14 | −7.8 (2) |
| C1—C2—C3—C4 | −108.63 (17) | C14—C9—C10—C11 | 2.6 (2) |
| N2—C2—C3—C4 | 73.22 (18) | N3—C9—C10—C11 | −177.28 (14) |
| C8—C3—C4—C5 | −1.4 (2) | C9—C10—C11—C12 | −0.5 (2) |
| C2—C3—C4—C5 | −176.84 (13) | C10—C11—C12—F1 | 178.69 (15) |
| C8—C3—C4—N1 | 178.78 (12) | C10—C11—C12—C13 | −1.7 (3) |
| C2—C3—C4—N1 | 3.3 (2) | F1—C12—C13—C14 | −178.71 (14) |
| O2—N1—C4—C5 | 26.58 (18) | C11—C12—C13—C14 | 1.6 (2) |
| O1—N1—C4—C5 | −151.37 (13) | C12—C13—C14—C9 | 0.5 (2) |
| O2—N1—C4—C3 | −153.54 (13) | C10—C9—C14—C13 | −2.6 (2) |
| O1—N1—C4—C3 | 28.51 (19) | N3—C9—C14—C13 | 177.24 (13) |
| H··· | ||||
| C6—H6···O1i | 0.95 | 2.51 | 3.3244 (18) | 144 |