| Literature DB >> 35974764 |
Xinkun Ren1, Ajay L Chandgude1, Daniela M Carminati1, Zhuofan Shen2, Sagar D Khare2, Rudi Fasan1.
Abstract
Organophosphonate compounds have represented a rich source of biologically active compounds, including enzyme inhibitors, antibiotics, and antimalarial agents. Here, we report the development of a highly stereoselective strategy for olefin cyclopropanation in the presence of a phosphonyl diazo reagent as carbene precursor. In combination with a 'substrate walking' protein engineering strategy, two sets of efficient and enantiodivergent myoglobin-based biocatalysts were developed for the synthesis of both (1R,2S) and (1S,2R) enantiomeric forms of the desired cyclopropylphosphonate ester products. This methodology enables the efficient transformation of a broad range of vinylarene substrates at a preparative scale (i.e. gram scale) with up to 99% de and ee. Mechanistic studies provide insights into factors that contribute to make this reaction inherently more challenging than hemoprotein-catalyzed olefin cyclopropanation with ethyl diazoacetate investigated previously. This work expands the range of synthetically useful, enzyme-catalyzed transformations and paves the way to the development of metalloprotein catalysts for abiological carbene transfer reactions involving non-canonical carbene donor reagents. This journal is © The Royal Society of Chemistry.Entities:
Year: 2022 PMID: 35974764 PMCID: PMC9337741 DOI: 10.1039/d2sc01965e
Source DB: PubMed Journal: Chem Sci ISSN: 2041-6520 Impact factor: 9.969
Fig. 1(a) Biologically active organophosphonates and (b) biocatalytic method for the stereoselective synthesis of cyclopropylphosphonates (this work).
Activity and selectivity of Mb and variants thereof in the cyclopropanation of styrene with dimethyl (diazomethyl)phosphonate to give 3aa
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| |||||
|---|---|---|---|---|---|
| Entry | Catalyst | Yield | TON | de | ee |
| 1 | Hemin | 0% | 0 | n.d. | n.d. |
| 2 | Mb | 0.4% | 1 | 90 | n.d. |
| 3 | Mb(H64V,V68A) | 1.6% | 2 | >99 | 98 |
| 4 | Mb(H64G,V68A) | 67% | 83 | >99 | >99 |
| 5 | Mb(H64A,V68G) | 18% | 23 | >99 | 79 |
| 6 | Mb(H64V,V68G) | 13% | 16 | >99 | 97 |
| 7 | Mb(H64A,V68G,I107L) | 35% | 44 | >99 | 97 |
| 8 | Mb(H64G,V68A) | 99% (94%) | 250 | >99 | >99 |
| 9 | Mb(H64G,V68A) | 47% | 470 | >99 | >99 |
| 10 | Mb(H64G,V68A) | 99% | 187 | >99 | >99 |
Reaction conditions: 2.5 mM dimethyl (diazomethyl)phosphonate (1), 5 mM styrene (2a), 20 μM Mb variant in KPi buffer (50 mM, pH 7), 10 mM Na2S2O4, r.t., 16 h in sealed anaerobic crimp vials. See also Tables S1 and S2.
GC yield based on the calibration curves prepared using authentic standards. Yields of isolated products are reported in brackets.
% de Values: (trans − cis)/(trans + cis).
Trans% ee values: [(1S,2R) − (1R,2S)]/[(1R,2S) + (1S,2R)].
Using 40 μM Mb, 20 mM 1, and 10 mM styrene.
Using 10 μM Mb, 20 mM 1, and 10 mM styrene.
Using whole cells at OD600 = 80, 20 mM 1, and 10 mM styrene.
Fig. 2(A) Structure–activity analysis of the (1S,2R)- and (1R,2S)-selective cyclopropanation biocatalysts. See Fig. S4† for complete activity and selectivity data. (B) Improved (1R,2S)-selective biocatalysts obtained by directed evolution of Mb variant RR4 via a substrate walking approach.
Substrate scope for Mb(H64G,V68A)-mediated olefin cyclopropanation with dimethyl (diazomethyl)phosphonatea
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| ||||
|---|---|---|---|---|
| Entry | Product | Yield | % de | % ee |
| 1 |
| 99% (90%) | >99 | >99 |
| 2 |
| 65% (59%) | >99 | >99 |
| 3 |
| 73% (61%) | >99 | >99 |
| 4 |
| 63% (52%) | >99 | 98 |
| 5 |
| 93% (87%) | >99 | >99 |
| 6 |
| 48% (41%) | >99 | 99 |
| 7 |
| 95% (85%) | >99 | >99 |
| 8 |
| 56% (51%) | >99 | >99 |
| 9 |
| 44% (36%) | >99 | >99 |
| 10 |
| 46% (41%) | >99 | 99 |
| 11 |
| 20% (15%) | 24 | >99 |
Reaction conditions: 10 mM olefin, 20 mM dimethyl (diazomethyl)phosphonate (1), 40 μM Mb(H64G,V68A) purified protein in KPi buffer (50 mM, pH 7), 50 mL-scale, RT, 16 h.
Product conversion as determined by GC. Yields of isolated products are reported in brackets. Errors are within 10%.
Reaction volume: 600 mL.
Using Mb(H64V,V68G) as catalyst.
Using 5 mM olefin and 10 mM dimethyl (diazomethyl)phosphonate.
Using Mb(H64A,V68G,I107L).
Scheme 1Gram-scale biocatalytic synthesis of 3d and further functionalization to 3da for crystallographic analysis. See Fig. S5 and Table S8† for crystallographic data.
Substrate scope for Mb-mediated trans-(1R,2S) selective olefin cyclopropanation with dimethyl (diazomethyl)phosphonatea
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| |||||
|---|---|---|---|---|---|
| Entry | Mutations ( | Product | Yield | % de | % ee |
|
| |||||
| 1 | RR4 | R1 = H (4a) | 96% | 99% | >99% |
| 2 | RR4 | R1 = 4-F (4b) | 72% | 99% | 91% |
| 3 | RR4 | R1 = 4-Cl (4c) | 38% | 99% | 82% |
| T29C,V64A | 64% | 99% | 92% | ||
| 4 | RR4 | R1 = 4-Br (4d) | 38% | 99% | 65% |
| T29C,V64A | 63% | 99% | 84% | ||
| 5 | RR4 | R1 = 4-CF3 (4e) | 9% | 99% | 33% |
| T29C,V64A | 24% | 99% | 56% | ||
| 6 | RR4 | R1 = 4-OMe (4f) | 99% | 99% | 59% |
| 7 | RR4 | R1 = 4-Me (4g) | 22% | 99% | 57% |
| T29C,V64A | 41% | 99% | 76% | ||
| 8 | RR4 | R1 = 3-Me (4h) | 40% | 27% | 72% |
| T29V | 71% | 91% | 76% | ||
| 9 | RR4 | R1 = 2-Me (4i) | 99% | 99% | >99% |
| 10 | RR4 | R1 = 3-Br (4j) | 40% | 46% | 88% |
| T29V | 99% | 94% | 89% | ||
| 11 | RR4 |
| 12% | 99% | 45% |
| T29V,V64A | 24% | 99% | 81% | ||
| 12 | RR4 |
| 14% | 99% | 71% |
| T29C,V64A | 45% | 86% | 94% | ||
Reaction conditions: 5 mM olefin, 10 mM dimethyl (diazomethyl)phosphonate (1), Mb-expressing E. coli (OD600 = 100) in KPi buffer (50 mM, pH 7), 1 mL-scale, RT, 16 h.
Product conversion as determined by GC. Errors are within 10%.
Fig. 3(A) Radical trapping experiment with styrene and dimethyl (diazomethyl)phosphonate. (B) Enzymatic cyclopropanation reaction with cis-β-deutero-styrene. (C) Gibbs free energy diagram for the heme-catalyzed styrene cyclopropanation reaction with dimethyl (diazomethyl)phosphonate (1) and EDA. Molecular models of key TS and intermediates in the reaction pathway with 1 are shown. ΔG values calculated based on the UB3LYP/6-311G** + SDD//UB3LYP-D3BJ/def2-TZVP + SDD method. See Table S8† for further details. NMI = 5-methyl-imidazole.