Literature DB >> 32407077

Mechanism-Guided Design and Discovery of Efficient Cytochrome P450-Derived C-H Amination Biocatalysts.

Viktoria Steck1, Joshua N Kolev1, Xinkun Ren1, Rudi Fasan1.   

Abstract

Cytochromes P450 have been recently identified as a promising class of biocatalysts for mediating C-H aminations via nitrene transfer, a <span class="Chemical">valuable transformation for forging new C-N bonds. The catalytic efficiency of P450s in these non-native transformations is however significantly inferior to that exhibited by these enzymes in their native monooxygenase function. Using a mechanism-guided strategy, we report here the rational design of a series of P450BM3-based variants with dramatically enhanced C-H amination activity acquired through disruption of the native proton relay network and other highly conserved structural elements within this class of enzymes. This approach further guided the identification of XplA and BezE, two "atypical" natural P450s implicated in the degradation of a man-made explosive and in benzastatins biosynthesis, respectively, as very efficient C-H aminases. Both XplA and BezE could be engineered to further improve their C-H amination reactivity, which demonstrates their evolvability for abiological reactions. These engineered and natural P450 catalysts can promote the intramolecular C-H amination of arylsulfonyl azides with over 10 000-14 000 catalytic turnovers, ranking among the most efficient nitrene transfer biocatalysts reported to date. Mechanistic and structure-reactivity studies provide insights into the origin of the C-H amination reactivity enhancement and highlight the divergent structural requirements inherent to supporting C-H amination versus C-H monooxygenation reactivity within this class of enzymes. Overall, this work provides new promising scaffolds for the development of nitrene transferases and demonstrates the value of mechanism-driven rational design as a strategy for improving the catalytic efficiency of metalloenzymes in the context of abiological transformations.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 32407077      PMCID: PMC7372717          DOI: 10.1021/jacs.9b12859

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  66 in total

1.  Enantioselective catalytic aziridinations and asymmetric nitrene insertions into CH bonds.

Authors:  Paul Müller; Corinne Fruit
Journal:  Chem Rev       Date:  2003-08       Impact factor: 60.622

2.  Mechanistic Analysis of Oxidative C-H Cleavages Using Inter- and Intramolecular Kinetic Isotope Effects.

Authors:  Hyung Hoon Jung; Paul E Floreancig
Journal:  Tetrahedron       Date:  2009-12-26       Impact factor: 2.457

3.  Chemoselective, Enzymatic C-H Bond Amination Catalyzed by a Cytochrome P450 Containing an Ir(Me)-PIX Cofactor.

Authors:  Paweł Dydio; Hanna M Key; Hiroki Hayashi; Douglas S Clark; John F Hartwig
Journal:  J Am Chem Soc       Date:  2017-01-26       Impact factor: 15.419

4.  Discovery of potent parthenolide-based antileukemic agents enabled by late-stage P450-mediated C-H functionalization.

Authors:  Joshua N Kolev; Kristen M O'Dwyer; Craig T Jordan; Rudi Fasan
Journal:  ACS Chem Biol       Date:  2013-11-08       Impact factor: 5.100

Review 5.  Catalytic C-H functionalization by metalloporphyrins: recent developments and future directions.

Authors:  Hongjian Lu; X Peter Zhang
Journal:  Chem Soc Rev       Date:  2010-11-19       Impact factor: 54.564

6.  Rational evolution of the cofactor-binding site of cytochrome P450 reductase yields variants with increased activity towards specific cytochrome P450 enzymes.

Authors:  Silja J Strohmaier; Weiliang Huang; Jong-Min Baek; Dominic J B Hunter; Elizabeth M J Gillam
Journal:  FEBS J       Date:  2019-07-26       Impact factor: 5.542

7.  Parallel and competitive pathways for substrate desaturation, hydroxylation, and radical rearrangement by the non-heme diiron hydroxylase AlkB.

Authors:  Harriet L R Cooper; Girish Mishra; Xiongyi Huang; Marilla Pender-Cudlip; Rachel N Austin; John Shanklin; John T Groves
Journal:  J Am Chem Soc       Date:  2012-12-10       Impact factor: 15.419

8.  Cloning, sequencing, and characterization of the hexahydro-1,3,5-Trinitro-1,3,5-triazine degradation gene cluster from Rhodococcus rhodochrous.

Authors:  Helena M B Seth-Smith; Susan J Rosser; Amrik Basran; Emma R Travis; Eric R Dabbs; Steve Nicklin; Neil C Bruce
Journal:  Appl Environ Microbiol       Date:  2002-10       Impact factor: 4.792

9.  Enantioselective imidation of sulfides via enzyme-catalyzed intermolecular nitrogen-atom transfer.

Authors:  Christopher C Farwell; John A McIntosh; Todd K Hyster; Z Jane Wang; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2014-06-05       Impact factor: 15.419

Review 10.  Undirected, Homogeneous C-H Bond Functionalization: Challenges and Opportunities.

Authors:  John F Hartwig; Matthew A Larsen
Journal:  ACS Cent Sci       Date:  2016-05-02       Impact factor: 14.553

View more
  7 in total

1.  Engineered and Artificial Metalloenzymes for Selective C-H Functionalization.

Authors:  Xinkun Ren; Rudi Fasan
Journal:  Curr Opin Green Sustain Chem       Date:  2021-04-08

2.  Combining chemistry and protein engineering for new-to-nature biocatalysis.

Authors:  David C Miller; Soumitra V Athavale; Frances H Arnold
Journal:  Nat Synth       Date:  2022-01-12

3.  The molecular mechanism of P450-catalyzed amination of the pyrrolidine derivative of lidocaine: insights from multiscale simulations.

Authors:  Conger Wang; Peng Wu; Zhanfeng Wang; Binju Wang
Journal:  RSC Adv       Date:  2021-08-16       Impact factor: 3.361

4.  Co-Crystal Structure-Guided Optimization of Dual-Functional Small Molecules for Improving the Peroxygenase Activity of Cytochrome P450BM3.

Authors:  Xiangquan Qin; Yiping Jiang; Jie Chen; Fuquan Yao; Panxia Zhao; Longyi Jin; Zhiqi Cong
Journal:  Int J Mol Sci       Date:  2022-07-18       Impact factor: 6.208

5.  Highly stereoselective and enantiodivergent synthesis of cyclopropylphosphonates with engineered carbene transferases.

Authors:  Xinkun Ren; Ajay L Chandgude; Daniela M Carminati; Zhuofan Shen; Sagar D Khare; Rudi Fasan
Journal:  Chem Sci       Date:  2022-06-06       Impact factor: 9.969

6.  The Ferric-Superoxo Intermediate of the TxtE Nitration Pathway Resists Reduction, Facilitating Its Reaction with Nitric Oxide.

Authors:  Christopher P Martin; Manyun Chen; Maria F Martinez; Yousong Ding; Jonathan D Caranto
Journal:  Biochemistry       Date:  2021-07-28       Impact factor: 3.162

7.  A Photoclick-Based High-Throughput Screening for the Directed Evolution of Decarboxylase OleT.

Authors:  Ulrich Markel; Pia Lanvers; Daniel F Sauer; Malte Wittwer; Gaurao V Dhoke; Mehdi D Davari; Johannes Schiffels; Ulrich Schwaneberg
Journal:  Chemistry       Date:  2020-12-09       Impact factor: 5.020

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.