Literature DB >> 31134138

Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase.

Antonio Tinoco1, Yang Wei2, John-Paul Bacik3, Daniela M Carminati1, Eric J Moore1, Nozomi Ando3, Yong Zhang2, Rudi Fasan1.   

Abstract

Recent advances in metalloprotein engineering have led to the development of a myoglobin-based catalyst, Mb(H64V,V68A), capable of promoting the cyclopropanation of vinylarenes with high efficiency and high diastereo- and enantioselectivity. Whereas many enzymes evolved in nature often exhibit catalytic proficiency and exquisite stereoselectivity, how these features are achieved for a non-natural reaction has remained unclear. In this work, the structural determinants responsible for chiral induction and high stereocontrol in Mb(H64V,V68A)-catalyzed cyclopropanation were investigated via a combination of crystallographic, computational (DFT), and structure-activity analyses. Our results show the importance of steric complementarity and non-covalent interactions involving first-sphere active site residues, heme-carbene, and the olefin substrate, in dictating the stereochemical outcome of the cyclopropanation reaction. High stereocontrol is achieved through two major mechanisms. First, by enforcing a specific conformation of the heme-bound carbene within the active site. Second, by controlling the geometry of attack of the olefin on the carbene via steric occlusion, attractive van der Waals forces and protein-mediated π-π interactions with the olefin substrate. These insights could be leveraged to expand the substrate scope of the myoglobin-based cyclopropanation catalyst toward non-activated olefins and to increase its cyclopropanation activity in the presence of a bulky α-diazo-ester. This work sheds first light into the origin of enzyme-catalyzed enantioselective cyclopropanation, furnishing a mechanistic framework for both understanding the reactivity of current systems and guiding the future development of biological catalysts for this class of synthetically important, abiotic transformations.

Entities:  

Keywords:  Density Functional Theory; Olefin cyclopropanation; biocatalytic carbene transfer; enantioselective cyclopropanation; heme carbenes; myoglobin

Year:  2018        PMID: 31134138      PMCID: PMC6534153          DOI: 10.1021/acscatal.8b04073

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


  58 in total

1.  Waterproofing the heme pocket. Role of proximal amino acid side chains in preventing hemin loss from myoglobin.

Authors:  E C Liong; Y Dou; E E Scott; J S Olson; G N Phillips
Journal:  J Biol Chem       Date:  2000-11-17       Impact factor: 5.157

2.  Tests of the RPBE, revPBE, tau-HCTHhyb, omegaB97X-D, and MOHLYP density functional approximations and 29 others against representative databases for diverse bond energies and barrier heights in catalysis.

Authors:  Ke Yang; Jingjing Zheng; Yan Zhao; Donald G Truhlar
Journal:  J Chem Phys       Date:  2010-04-28       Impact factor: 3.488

3.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

4.  Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments.

Authors:  Dmitry A Kondrashov; Wei Zhang; Roman Aranda; Boguslaw Stec; George N Phillips
Journal:  Proteins       Date:  2008-02-01

5.  Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections.

Authors:  Jeng-Da Chai; Martin Head-Gordon
Journal:  Phys Chem Chem Phys       Date:  2008-09-29       Impact factor: 3.676

6.  Remarkably stable iron porphyrins bearing nonheteroatom-stabilized carbene or (alkoxycarbonyl)carbenes: isolation, X-ray crystal structures, and carbon atom transfer reactions with hydrocarbons.

Authors:  Yan Li; Jie-Sheng Huang; Zhong-Yuan Zhou; Chi-Ming Che; Xiao-Zeng You
Journal:  J Am Chem Soc       Date:  2002-11-06       Impact factor: 15.419

7.  'Carbene radicals' in Co(II)(por)-catalyzed olefin cyclopropanation.

Authors:  Wojciech I Dzik; Xue Xu; X Peter Zhang; Joost N H Reek; Bas de Bruin
Journal:  J Am Chem Soc       Date:  2010-08-11       Impact factor: 15.419

8.  Alkene cyclopropanation catalyzed by Halterman iron porphyrin: participation of organic bases as axial ligands.

Authors:  Tat-Shing Lai; Fung-Yi Chan; Pui-Kin So; Dik-Lung Ma; Kwok-Yin Wong; Chi-Ming Che
Journal:  Dalton Trans       Date:  2006-08-22       Impact factor: 4.390

9.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
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  13 in total

1.  Mechanistic Investigation of Biocatalytic Heme Carbenoid Si-H Insertions.

Authors:  Rahul L Khade; Ajay L Chandgude; Rudi Fasan; Yong Zhang
Journal:  ChemCatChem       Date:  2019-05-08       Impact factor: 5.686

2.  Stereoselective Cyclopropanation of Electron-Deficient Olefins with a Cofactor Redesigned Carbene Transferase Featuring Radical Reactivity.

Authors:  Daniela M Carminati; Rudi Fasan
Journal:  ACS Catal       Date:  2019-09-05       Impact factor: 13.084

3.  Strategies for the expression and characterization of artificial myoglobin-based carbene transferases.

Authors:  Daniela M Carminati; Eric J Moore; Rudi Fasan
Journal:  Methods Enzymol       Date:  2020-08-06       Impact factor: 1.600

4.  Selective Functionalization of Aliphatic Amines via Myoglobin-catalyzed Carbene N-H Insertion.

Authors:  Viktoria Steck; Gopeekrishnan Sreenilayam; Rudi Fasan
Journal:  Synlett       Date:  2019-07-11       Impact factor: 2.454

5.  Biocatalytic Strategy for Highly Diastereo- and Enantioselective Synthesis of 2,3-Dihydrobenzofuran-Based Tricyclic Scaffolds.

Authors:  David A Vargas; Rahul L Khade; Yong Zhang; Rudi Fasan
Journal:  Angew Chem Int Ed Engl       Date:  2019-06-24       Impact factor: 15.336

6.  Stereodivergent Intramolecular Cyclopropanation Enabled by Engineered Carbene Transferases.

Authors:  Ajay L Chandgude; Xinkun Ren; Rudi Fasan
Journal:  J Am Chem Soc       Date:  2019-05-29       Impact factor: 15.419

7.  Organic solvent stability and long-term storage of myoglobin-based carbene transfer biocatalysts.

Authors:  Alfons J Pineda-Knauseder; David A Vargas; Rudi Fasan
Journal:  Biotechnol Appl Biochem       Date:  2020-07-09       Impact factor: 2.431

8.  Insight into the preferential N-binding versus O-binding of nitrosoarenes to ferrous and ferric heme centers.

Authors:  Erwin G Abucayon; Jia-Min Chu; Megan Ayala; Rahul L Khade; Yong Zhang; George B Richter-Addo
Journal:  Dalton Trans       Date:  2021-03-16       Impact factor: 4.390

9.  A Diverse Library of Chiral Cyclopropane Scaffolds via Chemoenzymatic Assembly and Diversification of Cyclopropyl Ketones.

Authors:  Donggeon Nam; Viktoria Steck; Robert J Potenzino; Rudi Fasan
Journal:  J Am Chem Soc       Date:  2021-01-26       Impact factor: 15.419

Review 10.  Unlocking the therapeutic potential of artificial metalloenzymes.

Authors:  Katsunori Tanaka; Kenward Vong
Journal:  Proc Jpn Acad Ser B Phys Biol Sci       Date:  2020       Impact factor: 3.493

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