Literature DB >> 35966813

Super-resolution multi-reference alignment.

Tamir Bendory1, Ariel Jaffe2, William Leeb3, Nir Sharon4, Amit Singer5.   

Abstract

We study super-resolution multi-reference alignment, the problem of estimating a signal from many circularly shifted, down-sampled and noisy observations. We focus on the low SNR regime, and show that a signal in ℝ M is uniquely determined when the number L of samples per observation is of the order of the square root of the signal's length ( L = O ( M ) ). Phrased more informally, one can square the resolution. This result holds if the number of observations is proportional to 1/SNR3. In contrast, with fewer observations recovery is impossible even when the observations are not down-sampled (L = M). The analysis combines tools from statistical signal processing and invariant theory. We design an expectation-maximization algorithm and demonstrate that it can super-resolve the signal in challenging SNR regimes.

Entities:  

Year:  2021        PMID: 35966813      PMCID: PMC9374099          DOI: 10.1093/imaiai/iaab003

Source DB:  PubMed          Journal:  Inf inference        ISSN: 2049-8764


  17 in total

1.  Imaging atomic structure and dynamics with ultrafast x-ray scattering.

Authors:  K J Gaffney; H N Chapman
Journal:  Science       Date:  2007-06-08       Impact factor: 47.728

2.  Fourier-Bessel rotational invariant eigenimages.

Authors:  Zhizhen Zhao; Amit Singer
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2013-05-01       Impact factor: 2.129

3.  cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.

Authors:  Ali Punjani; John L Rubinstein; David J Fleet; Marcus A Brubaker
Journal:  Nat Methods       Date:  2017-02-06       Impact factor: 28.547

4.  Denoising and covariance estimation of single particle cryo-EM images.

Authors:  Tejal Bhamre; Teng Zhang; Amit Singer
Journal:  J Struct Biol       Date:  2016-04-27       Impact factor: 2.867

5.  Heterogeneous multireference alignment for images with application to 2-D classification in single particle reconstruction.

Authors:  Chao Ma; Tamir Bendory; Nicolas Boumal; Fred Sigworth; Amit Singer
Journal:  IEEE Trans Image Process       Date:  2019-10-10       Impact factor: 10.856

6.  The reconstruction of structure from electron micrographs of randomly oriented particles.

Authors:  Z Kam
Journal:  J Theor Biol       Date:  1980-01-07       Impact factor: 2.691

7.  Bispectrum Inversion with Application to Multireference Alignment.

Authors:  Tamir Bendory; Nicolas Boumal; Chao Ma; Zhizhen Zhao; Amit Singer
Journal:  IEEE Trans Signal Process       Date:  2017-11-20       Impact factor: 4.931

Review 8.  Cryo-EM: A Unique Tool for the Visualization of Macromolecular Complexity.

Authors:  Eva Nogales; Sjors H W Scheres
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

9.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

10.  Ab initio structure determination from experimental fluctuation X-ray scattering data.

Authors:  Kanupriya Pande; Jeffrey J Donatelli; Erik Malmerberg; Lutz Foucar; Christoph Bostedt; Ilme Schlichting; Petrus H Zwart
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-29       Impact factor: 11.205

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