Literature DB >> 35959726

Learning to predict target location with turbulent odor plumes.

Nicola Rigolli1,2,3,4, Nicodemo Magnoli1,3, Lorenzo Rosasco5, Agnese Seminara2,4.   

Abstract

Animal behavior and neural recordings show that the brain is able to measure both the intensity and the timing of odor encounters. However, whether intensity or timing of odor detections is more informative for olfactory-driven behavior is not understood. To tackle this question, we consider the problem of locating a target using the odor it releases. We ask whether the position of a target is best predicted by measures of timing vs intensity of its odor, sampled for a short period of time. To answer this question, we feed data from accurate numerical simulations of odor transport to machine learning algorithms that learn how to connect odor to target location. We find that both intensity and timing can separately predict target location even from a distance of several meters; however, their efficacy varies with the dilution of the odor in space. Thus, organisms that use olfaction from different ranges may have to switch among different modalities. This has implications on how the brain should represent odors as the target is approached. We demonstrate simple strategies to improve accuracy and robustness of the prediction by modifying odor sampling and appropriately combining distinct measures together. To test the predictions, animal behavior and odor representation should be monitored as the animal moves relative to the target, or in virtual conditions that mimic concentrated vs dilute environments.
© 2022, Rigolli et al.

Entities:  

Keywords:  fluid dynamics; machine learning; none; olfaction; physics of living systems; prediction

Mesh:

Year:  2022        PMID: 35959726      PMCID: PMC9374438          DOI: 10.7554/eLife.72196

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.713


  34 in total

1.  The function of bilateral odor arrival time differences in olfactory orientation of sharks.

Authors:  Jayne M Gardiner; Jelle Atema
Journal:  Curr Biol       Date:  2010-06-10       Impact factor: 10.834

2.  Encoding a temporally structured stimulus with a temporally structured neural representation.

Authors:  Stacey L Brown; Joby Joseph; Mark Stopfer
Journal:  Nat Neurosci       Date:  2005-10-16       Impact factor: 24.884

3.  Olfactory Navigation and the Receptor Nonlinearity.

Authors:  Jonathan D Victor; Sebastian D Boie; Erin G Connor; John P Crimaldi; G Bard Ermentrout; Katherine I Nagel
Journal:  J Neurosci       Date:  2019-03-07       Impact factor: 6.167

4.  Pheromone-regulated anemotaxis in flying moths.

Authors:  J S Kennedy; D Marsh
Journal:  Science       Date:  1974-05-31       Impact factor: 47.728

5.  Eddy Chemotaxis and Odor Landscapes: Exploration of Nature With Animal Sensors.

Authors:  J Atema
Journal:  Biol Bull       Date:  1996-08       Impact factor: 1.818

6.  Lobster orientation in turbulent odor plumes: simultaneous measurement of tracking behavior and temporal odor patterns.

Authors:  J Basil; J Atema
Journal:  Biol Bull       Date:  1994-10       Impact factor: 1.818

Review 7.  Smelling Time: A Neural Basis for Olfactory Scene Analysis.

Authors:  Barry W Ache; Andrew M Hein; Yuriy V Bobkov; Jose C Principe
Journal:  Trends Neurosci       Date:  2016-10       Impact factor: 13.837

8.  Fast odour dynamics are encoded in the olfactory system and guide behaviour.

Authors:  Tobias Ackels; Andrew Erskine; Debanjan Dasgupta; Alina Cristina Marin; Tom P A Warner; Sina Tootoonian; Izumi Fukunaga; Julia J Harris; Andreas T Schaefer
Journal:  Nature       Date:  2021-05-05       Impact factor: 49.962

9.  Odor Concentration Change Coding in the Olfactory Bulb.

Authors:  Ana Parabucki; Alexander Bizer; Genela Morris; Antonio E Munoz; Avinash D S Bala; Matthew Smear; Roman Shusterman
Journal:  eNeuro       Date:  2019-02-27

10.  Information-theoretic analysis of realistic odor plumes: What cues are useful for determining location?

Authors:  Sebastian D Boie; Erin G Connor; Margaret McHugh; Katherine I Nagel; G Bard Ermentrout; John P Crimaldi; Jonathan D Victor
Journal:  PLoS Comput Biol       Date:  2018-07-10       Impact factor: 4.475

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  1 in total

1.  Alternation emerges as a multi-modal strategy for turbulent odor navigation.

Authors:  Nicola Rigolli; Gautam Reddy; Agnese Seminara; Massimo Vergassola
Journal:  Elife       Date:  2022-08-23       Impact factor: 8.713

  1 in total

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