New approaches to target antibacterial agents toward Gram-negative bacteria are key, given the rise of antibiotic resistance. Since the discovery of polymyxin B nonapeptide as a potent Gram-negative outer membrane (OM)-permeabilizing synergist in the early 1980s, a vast amount of literature on such synergists has been published. This Review addresses a range of peptide-based and small organic compounds that disrupt the OM to elicit a synergistic effect with antibiotics that are otherwise inactive toward Gram-negative bacteria, with synergy defined as a fractional inhibitory concentration index (FICI) of <0.5. Another requirement for the inclusion of the synergists here covered is their potentiation of a specific set of clinically used antibiotics: erythromycin, rifampicin, novobiocin, or vancomycin. In addition, we have focused on those synergists with reported activity against Gram-negative members of the ESKAPE family of pathogens namely, Escherichia coli, Pseudomonas aeruginosa, Klebsiella pneumoniae, and/or Acinetobacter baumannii. In cases where the FICI values were not directly reported in the primary literature but could be calculated from the published data, we have done so, allowing for more direct comparison of potency with other synergists. We also address the hemolytic activity of the various OM-disrupting synergists reported in the literature, an effect that is often downplayed but is of key importance in assessing the selectivity of such compounds for Gram-negative bacteria.
New approaches to target antibacterial agents toward Gram-negative bacteria are key, given the rise of antibiotic resistance. Since the discovery of polymyxin B nonapeptide as a potent Gram-negative outer membrane (OM)-permeabilizing synergist in the early 1980s, a vast amount of literature on such synergists has been published. This Review addresses a range of peptide-based and small organic compounds that disrupt the OM to elicit a synergistic effect with antibiotics that are otherwise inactive toward Gram-negative bacteria, with synergy defined as a fractional inhibitory concentration index (FICI) of <0.5. Another requirement for the inclusion of the synergists here covered is their potentiation of a specific set of clinically used antibiotics: erythromycin, rifampicin, novobiocin, or vancomycin. In addition, we have focused on those synergists with reported activity against Gram-negative members of the ESKAPE family of pathogens namely, Escherichia coli, Pseudomonas aeruginosa, Klebsiella pneumoniae, and/or Acinetobacter baumannii. In cases where the FICI values were not directly reported in the primary literature but could be calculated from the published data, we have done so, allowing for more direct comparison of potency with other synergists. We also address the hemolytic activity of the various OM-disrupting synergists reported in the literature, an effect that is often downplayed but is of key importance in assessing the selectivity of such compounds for Gram-negative bacteria.
The increasing occurrence of
antibiotic resistance among Gram-negative pathogens highlights the
need for novel antibacterial agents and therapeutic strategies. It
is well established that Gram-negative bacteria are inherently harder
to kill with antibiotics than Gram-positives, given the presence of
the Gram-negative outer membrane (OM) as well as efflux pumps.[1−4] Given the limited number of clinically effective anti-Gram-negative
agents, there is an urgent need for new treatments against Gram-negative
pathogens.[5−7] This troubling reality is further exacerbated by
increasing accounts of emerging resistance mechanisms against Gram-negative
antibiotics, including extended spectrum β-lactamases (ESBLs)
that can render even fifth-generation cephalosporins and carbapenems
inactive,[8−11] enzymes that structurally modify and deactivate aminoglycosides,[12−15] and mcr-mediated polymyxin resistance.[16−27] In this context, the World Health Organization (WHO) recently listed Acinetobacter baumannii (carbapenem-resistant), Pseudomonas aeruginosa (carbapenem-resistant), and the Enterobacteriaceae (carbapenem-resistant and ESBL-producing
strains) as the bacterial pathogens of highest priority for the development
of new antibiotics.[28]The Gram-negative
OM functions as a barrier that prevents many
antibiotics, that are otherwise active against Gram-positive species,
from reaching their targets.[3,29] The OM itself consists
of an asymmetrical lipid bilayer (see Figure A).[30] The inner
leaflet consist mostly of phospholipids and is similar to the cytoplasmic
membrane.[31] The outer leaflet is made up
of an organized and fortified structure of densely packed lipopolysaccharides
(LPSs) and Mg2+/Ca2+ cations that bridge the
negatively charged phosphate groups of the lipid A component of LPS
(see Figure B).[3,32] Furthermore, the tightly packed saturated acyl chains result in
a low level of membrane fluidity that limits the diffusion of hydrophobic
compounds across the OM.[2,3] The OM also contains
porins, which function as size exclusion channels across the OM that
mediate the diffusion of small hydrophilic molecules between the periplasm
and the extracellular environment while keeping large, hydrophobic
molecules, including many antibiotics, out.[1,2,29] Additionally, when lipophilic or amphiphilic
antibiotics do manage to cross the OM, multi-drug efflux pumps can
transport these molecules back out.[1−3,29] In many cases, the overexpression of efflux pumps provides an effective
means for a Gram-negative pathogen to decrease its susceptibility
to antibiotics.[3,33] Taken together, their diverse
resistance mechanisms and unique cellular features provide Gram-negative
bacteria with a formidable range of defenses against antibacterial
agents.
Figure 1
(A) Schematic depiction of the OM disruption required for potentiation
of Gram-positive specific antibiotics (created with BioRender.com).
(B) Lipid A (from Escherichia coli K-12), the hydrophobic
anchor of LPS.
(A) Schematic depiction of the OM disruption required for potentiation
of Gram-positive specific antibiotics (created with BioRender.com).
(B) Lipid A (from Escherichia coli K-12), the hydrophobic
anchor of LPS.To address the specific challenges posed by Gram-negative
bacteria,
a number of new and innovative approaches are currently under investigation.
Such strategies include interfering with LPS biosynthesis,[34−37] targeting OM proteins such as the β-barrel assembly machine
(BAM) complex,[34,38,39] developing siderophore–antibiotic conjugates as Trojan horse
agents, including the recently approved cefiderecol,[40−42] co-administering different antibiotics to restrict or reverse antibiotic
resistance,[43,44] and blocking efflux pumps.[45−48] In addition to these promising strategies, the development of agents
that can selectively disrupt the OM offers the possibility of sensitizing
Gram-negative bacteria to antibiotics that otherwise function only
against Gram-positive bacteria.[3,7,32] The pursuit of such synergists continues to be a very active field
of research and is the basis for this Review.The best-studied
example of an OM-disrupting synergist is polymyxin
B nonapeptide (PMBN), which is obtained by enzymatic degradation
of the clinically used lipopeptide polymyxin B (PMB).[7,32] The potentiating effects of PMBN were first reported in the 1980s,
and in the decades since, a growing number of OM-disrupting synergists
have been discovered.[7,32,49] To date, a number of reviews have been published on the general
topic of antibiotic synergy,[50−57] including compounds that potentiate Gram-positive antibiotics through
interactions with the OM[58] and OM-disrupting
synergists.[32,59−63] However, a comprehensive overview of OM-disrupting
synergists that also provides the reader with a direct comparison
of both the potency and selectively of these compounds has, to date,
been lacking. In this regard, the most widely accepted benchmark for
synergistic activity is the so-called fractional inhibitory concentration
index (FICI, Box ).[64] In this Review, we discuss only those synergists
for which FICI values are reported or could be calculated from published
data. The other criterion we have also chosen to emphasize is the
selectivity of OM disruption associated with these synergists. In
this regard, we pay special attention to the hemolytic activity reported
for the various OM disrupters as a means of assessing their membrane
specificity.The FICI is calculated
from experimental minimum inhibitory concentration
(MIC) data as shown in eq . A synergistic combination is generally defined as an FICI <
0.5. Additionally, it allows for a straightforward comparison of the
potency of the synergistic combinations: the lower the FICI, the more
potent the combination.Among the Gram-negative
bacteria for which OM-disrupting synergists
have been reported, we have selected those pathogens noted on the
WHO’s priority list: A. baumannii, Escherichia coli, Klebsiella pneumoniae, or P. aeruginosa.[28] As for Gram-positive specific antibiotics whose activity is potentiated
by OM-disrupting synergists, we have chosen to focus on clinically
used agents that are most commonly evaluated for synergy with OM disrupters:
erythromycin, rifampicin, vancomycin, and novobiocin.[7,58] This criterion has, for example, led to the exclusion of OM-disrupting
agents for which synergy was reported with macrolide antibiotics other
than erythromycin.[65−68] Also, while the specific media conditions used in antibacterial
assays can strongly influence the outcome of synergy studies, for
the sake of brevity, we do not include this level of detail here and
instead provide clear referencing of the original studies wherein
such information can be found. In addition, to further streamline
the Review, synergists for which an OM-disrupting mechanism was not
clearly demonstrated are not here discussed in detail.[69−77] Furthermore, synergists that specifically engage with Gram-negative
targets and subsequently cause OM disruption as a secondary effect
are not discussed in this Review.[78−86]The scope of the synergists included in this Review ranges
from
peptides to synthetic small molecules and small polymers of <1500
Da. In this regard, protein-based OM disrupters such as the membrane
attack complex (MAC),[87] lactoferrin,[88] and the bactericidal/permeability-increasing
protein (BPI)[89] or larger polymers or polymer-like
agents[90−97] will not be discussed. This Review is further organized on the basis
of the chemical families of the synergists covered. We begin with
cyclic peptides based on PMBN, followed by linear peptides, cationic
steroids, peptide–steroid hybrids, and small molecules. For
each subgroup of synergists, a summary table has been assembled to
provide a convenient comparative overview of FICI values. These tables
also include the identity of the Gram-negative species and companion
antibiotics employed in generating the FICIs. In addition, where possible,
we have included the reported hemolytic activity of each synergist
to provide an indication of its selectivity for Gram-negative cells.
Peptide-Based Potentiators
Polymyxin-Derived Synergists
Polymyxin-derived
synergists have been extensively reviewed in the past, and therefore
only a concise summary of these analogues is here included.[7,32,63] PMBN is derived from the parent
lipopeptide PMB (see Figure A). Unlike its parent compound, PMBN has no inherent antimicrobial
activity, nor is it nephrotoxic.[7,98] In their landmark 1983
paper, Martti and Timo Vaara demonstrated that the combination of
PMBN with hydrophobic, generally Gram-positive-specific, antibiotics
results in a potent synergistic effect (see Table ).[32,49] In this regard, PMBN
is often used as a benchmark for synergistic activity.[7] Apart from PMBN, other truncated derivatives of PMB, like
deacylpolymyxin B (DAPB), polymyxin B octapeptide (PMBO), and polymyxin
B heptapeptide (PMBH), also display synergistic activity (Figure A and Table ).[32] The peptide macrocycle is of key importance for these synergists,
as linear PMBN variants lose their synergistic activity.[99]
Figure 2
Molecular structures of (A) polymyxin B (PMB), deacylpolymyxin
B (DAPB), polymyxin B nonapeptide (PMBN), polymyxin B octapeptide
(PMBO), and polymyxin B heptapeptide (PMBH) and (B) PMBN analogues
SPR741, NAB739, and NAB7061.
Table 1
Synergistic Activity of Polymyxin
Analogues
name
ref
FICIa
pathogen
antibiotic
PMBN
(105)
0.013a
E. coli
rifampicin
PMBO
(105)
0.013a
E. coli
rifampicin
PMBH
(105)
0.020a
E. coli
rifampicin
DAPB
(105)
0.043a
E. coli
rifampicin
SPR741
(106)
0.06
E.
coli
rifampicin
NAB739
(100)
0.126
A.
baumannii
rifampicin
NAB7061
(100)
0.055
E. coli
rifampicin
FICI calculated using eq from MIC values reported in the
cited reference.
Molecular structures of (A) polymyxin B (PMB), deacylpolymyxin
B (DAPB), polymyxin B nonapeptide (PMBN), polymyxin B octapeptide
(PMBO), and polymyxin B heptapeptide (PMBH) and (B) PMBN analogues
SPR741, NAB739, and NAB7061.FICI calculated using eq from MIC values reported in the
cited reference.A new generation of PMBN analogues containing only
three positive
charges was developed more recently.[100,101] SPR741, previously
named NAB741, has passed the Phase I clinical trials (see Figure B).[7] Like PMBN, SPR741 has no lipophilic tail, resulting in
improved renal clearance compared to PMB and other analogues that
have a lipophilic tail, such as NAB739 and NAB7061.[101] NAB7061 has little inherent antimicrobial activity but
is a very potent synergist, while NAB739 has very potent antimicrobial
activity (Table ).[102] Remarkably, this difference in activity between
NAB739 and NAB7061 is attributed to the absence of one hydroxyl group
in NAB7061 (see Figure B).[100] NAB739 has been reported to exhibit
generally moderate synergistic activity against wild-type strains,
with the exception of the A. baumannii strain indicated
in Table .[100,103] Interestingly, against mcr-positive strains, the
loss of antimicrobial activity for NAB739 is accompanied by a significant
increase in its synergistic activity, an effect also noted for colistin.[103,104]
Dilipidated Polymyxins
Polymyxin
analogues bearing additional lipid tails have also been explored to
test the hypothesis that additional hydrophobicity might enhance membrane
interactions.[107] To generate these variants,
a variety of acyl tails were added to both amino groups of the N-terminal
2,4-diaminobutyric acid (Dab) residue of PMB (Figure ).[107,108] The introduction of
simple propyl lipids, as in analogue 1, led to a complete
loss of inherent activity (MIC ≥ 64 μg/mL), while the
analogues 2 and 5, bearing larger, more
hydrophobic groups, maintained moderate activity, with MICs of 4–64
μg/mL against most Gram-negative bacteria.[107] Notably, the reduced inherent activity was accompanied
by a higher synergistic potential (Table ), indicating that these dilipidated analogues
have an increased capacity to disrupt the OM.[107] Also of note is the reported activity of analogues 2 and 5 against Gram-positive bacteria (MICs
of 8–32 μg/mL) compared to colistin, which has no such
activity (MIC > 128 μg/mL).[107]
Figure 3
Molecular
structures of the dilipidated polymyxin analogues.
Table 2
Synergistic Activities of Dilipidated
Polymyxin Analogues
name
ref
FICI
pathogen
antibiotic
hemolytic
activitya
dilipid polymyxin 1
(107)
0.02
P. aeruginosa
rifampicin
<10% (1 h)
dilipid polymyxin 2
(107)
0.26
P. aeruginosa
novobiocin
<10% (1 h)
dilipid polymyxin 5
(107)
0.31
P. aeruginosa
rifampicin
<10% (1 h)
Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses.
Molecular
structures of the dilipidated polymyxin analogues.Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses.
Linear Peptide-Based Synergists
In
most reviews published on the topic of OM-targeting synergists, relatively
little attention has been paid to linear peptides. Peptides have several
drawbacks, including poor metabolic stability, low bioavailability,
potential immunogenicity, and high production costs.[109−111] To improve their metabolic stability, the structures of peptides
can be adapted by a number of approaches, including peptidomimetics,
lipidation, head-to-tail cyclization, N- and C-terminus modifications,
backbone stereochemistry changes, and incorporation of unnatural amino
acids.[109,110,112−116] Improvements to the bioavailability of peptides have also been explored
by applying formulation techniques, adjusting the properties of peptides,
or linking them to a moiety to improve passage over the blood–brain
barrier.[109−111] These advances, combined with the development
of more economical methods for peptide synthesis, support a future
role for peptide-based therapeutics, with a number of antimicrobial
peptides (AMPs) already in (pre)clinical development.[117−121]An increasing number of peptide synergists that function through
OM disruption have been reported in the literature (see Table ). In some studies, panels of
structurally similar peptides are screened, resulting in the identification
of multiple hits with FICI <0.5. In such cases, we have opted to
select up to four of the most potent synergists to limit the number
of peptides. Given that most peptide-based synergists are derived
from specific lead proteins or AMPs, we have divided the linear peptide
synergists accordingly, both in the discussion below and in the overview
in Table .
Table 3
Overview of Linear Peptide-Based Synergists
namea
ref
peptide sequenceb
FICI
pathogen
antibiotic
hemolytic
activityc
Cathelicidin-Derived Peptides
FK16
(130)
FKRIVQRIKDFLRNLV
0.25
P.
aeruginosa
vancomycin
<10% (1 h)
KR-12-a2
(131, 214)
KRIVQRIKKWLR-NH2
0.156
P.
aeruginosa
erythromycin
<10% (1 h)
L-11
(132)
RIVQRIKKWLR-NH2
0.070
A.
baumannii
vancomycin
NR
D-11
(132, 133)
rivqrikkwlr-NH2
0.032
A. baumannii
rifampicin
<10% (1 h)
novicidin
(134)
KNLRRIIRKGIHIIKKYF
0.018
E. coli
rifampicin
<10% (1 h)
G2
(135)
RGARIVVIRVAR-NH2
0.38
P.
aeruginosa
erythromycin
NR
R2
(135)
RRARIVVIRVAR-NH2
0.27
P. aeruginosa
erythromycin
NR
DP7
(138, 215)
VQWRIRVAVIRK
0.25
P. aeruginosa
vancomycin
<10% (1 h)
indopt 10
(135)
ILKWKIFKWKWFR-NH2
0.38
P. aeruginosa
erythromycin
NR
CLS001
(138, 140)
ILRWPWWPWRRK-NH2
0.28
P. aeruginosa
vancomycin
10% (30 min)
Lactoferrin-Derived Peptides
P10
(141)
FWQRNIRKVKKK-NH2
0.113
P. aeruginosa
novobiocin
<10% (1 h)
P14
(141)
FWQRNIRKVKKKI-NH2
0.113
P.
aeruginosa
novobiocin
<10% (1 h)
P22
(141)
RFWQRNIRKYRR-NH2
0.431
P.
aeruginosa
novobiocin
<10% (1 h)
P2–16
(142)
FWRNIRIWRR-NH2
0.116
P. aeruginosa
novobiocin
NR
P12
(145, 216)
RRWQWRMKKLGA
0.43
E. coli
erythromycin
<10% (2 h)
P15
(145)
FK-Bip-RRWQWRMKKLGAd
0.38
E. coli
erythromycin
NR
P18
(145)
PAWFKARRWAWRMLKKAA
0.38
E. coli
erythromycin
NR
Thrombin-Derived Peptides
peptide 6
(148)
VFRLKKWIQKVI-NH2
0.094
E. coli
rifampicin
<10% (20 h)
peptide 14
(148)
VFRLKKAIQKVI-NH2
0.078
E. coli
erythromycin
<10% (20 h)
peptide 19
(148)
VFRLKKWIQKVA-NH2
0.078
E. coli
rifampicin
<10% (20 h)
Histatin-Derived
Peptides
Nal-P-113
(153, 155)
Ac-AKR-Nal-Nal-GYKRKF-Nal-NH2e
0.38
E. coli
vancomycin
>10% (1 h)
Bip-P-113
(153, 155)
Ac-AKR-Bip-Bip-GYKRKF-Bip-NH2d
0.38
E.
coli
vancomycin
>10% (1 h)
Other Natural AMPs, Their
Hybrids, and Derivatives
buforin II
(156, 217)
TRSSRAGLQFPVGRVHRLLRK
0.312
A. baumannii
rifampicin
<10% (1 h)
esculentin 1b
(157, 218)
GIFSKLAGKKLKNLLISG-NH2
0.36
E.
coli
erythromycin
>10% (1 h)
HE2α
(158, 162)
VHISHREARGPSFRICVGFLGPRWARGCSTGN
0.3
E.coli
rifampicin
<10% (1 h)
HE2β2
(158, 162)
GDVPPGIRNTICRMQQGICRLFFCHSGTGQQHRQRCG
0.2
E.coli
rifampicin
<10% (1 h)
anoplin
(159)
GLLKRIKTLL
0.3125
P. aeruginosa
rifampicin
<10% (1 h)
magainin II
(160, 217)
GIGKFLHAAKKFAKAFVAEIMNS-NH2
0.312
P.
aeruginosa
rifampicin
>10% (1 h)
cecropin A
(160, 165)
KWKLFKKIEKVGQNIRDGIIKAGPAVAVVGQATQIAK-NH2
0.312
P. aeruginosa
rifampicin
<10% (1 h)
CAME
(219, 220)
KWKLFKKIGIGAVLKVLTTG-NH2
0.375
A. baumannii
erythromycin
<10% (1 h)
CAMA
(219, 220)
KWKLFKKIGIGKFLHSAKKF-NH2
0.25
A. baumannii
erythromycin
<10% (1 h)
HPMA
(219, 221)
AKKVFKRLGIGKFLHSAKKF-NH2
0.313
A. baumannii
erythromcyin
<10% (1 h)n
H-TriA1
(168, 169)
v-dab-GswS-Dab-dab-FEV-alle-Af,g
0.002
E. coli
rifampicin
<10% (30 min)n
SLAP-S25
(173)
Ac-Dab-I-Dab-I-Dab-fL-Dab-vLA-NH2f
0.031
E.
coli
rifampicin
<10% (1 h)
A13
(159)
GWWKRIKTWW
0.375
K. pneumoniae
rifampicin
<10% (1 h)
A17
(159)
KWWKRWKKWW
0.3125
P. aeruginosa
rifampicin
>10% (1 h)
A21
(159)
KWWKKWKKWW
0.3125
K. pneumoniae
rifampicin
<10% (1 h)
L7A
(139)
LNLKALAAVAKKIL-NH2
0.31
E. coli
rifampicin
<10% (1 h)
S1
(181, 184)
Ac-KKWRKWLAKK-NH2
0.38
A. baumannii
vancomycin
<10% (1 h)n
S1-Nal
(181, 184)
Ac-KKWRKWLAKK-Nal-NH2e
0.27
A. baumannii
vancomycin
<10% (1 h)n
S1-Nal-Nal
(181, 184)
Ac-KKWRKWLAKK-Nal-Nal-NH2e
0.27
A. baumannii
vancomycin
>10% (1 h)
Peptide Synergists via Library
Screening
peptide 79
(180, 185)
KKWRKWLKWLAKK-NH2
0.14
E. coli
rifampicin
<10% (1 h)
peptide 1
(71, 222)
KLWKKWKKWLK-NH2
0.02
K. pneumoniae
rifampicin
<10% (1 h)
peptide 2
(71, 188)
GKWKKILGKLIR-NH2
0.04
K. pneumoniae
rifampicin
<10% (1 h)
peptide D1
(71)
klwkkwkkwlk-NH2
≤0.03
K. pneumoniae
rifampicin
NR
peptide D2
(71)
gkwkkilgklir-NH2
≤0.04
K. pneumoniae
rifampicin
NR
Peptide Synergists from
Phage Display
EC5
(131, 186)
RLLFRKIRRLKR
0.266
P. aeruginosa
erythromycin
<10% (24 h)
Designed Peptides
peptide 4
(187)
KFFKFFKFF
0.03
E. coli
rifampicin
>10% (30 min)
peptide 5
(187)
IKFLKFLKFL
0.06
E. coli
rifampicin
NR
peptide 7
(187)
CKFKFKFKFC
0.20
E. coli
rifampicin
NR
ΔFm
(191)
Ac-GΔFRKΔFHKΔFWA-NH2h
0.3
E. coli
rifampicin
<10% (1 h)
ΔFmscr
(191)
Ac-GΔFRKΔFKAΔFWH-NH2h
0.14
E. coli
rifampicin
<10% (1 h)
LK-L8P
(223)
Ac-LKKLLKLPKKLLKL-NH2
0.18
E. coli
erythromycin
<10% (4 h)
LK-L11P
(223)
Ac-LKKLLKLLKKPLKL-NH2
0.47
E. coli
erythromycin
<10% (4 h)
KL-L6P
(223)
Ac-LKKLLPLLKKLLKL-NH2
0.33
E. coli
erythromycin
>10% (4 h)
KL-L9P
(223)
Ac-LKKLLKLLPKLLKL-NH2
0.12
E. coli
erythromycin
<10% (4 h)
zp12
(196)
GIKRGIIKIIKRIKRI-NH2
0.25
K. pneumoniae
vancomycin
NR
zp16
(196)
GIKRGIIKIIRRIKRI-NH2
0.06
K. pneumoniae
vancomycin
<10% (1 h)
K4
(197, 198)
WRKWRKWRKWRK-NH2
0.2
K. pneumoniae
rifampicin
<10% (1 h)
K5
(197, 198)
WRKWRKWRKWRKWRK-NH2
0.2
E. coli
rifampicin
<10% (1 h)
Lipopeptide Synergists
paenipeptin
1
(199, 200)
C6-Dab-I-Dab-fL-Dab-vLS-NH2f,i
0.125o
E. coli
rifampicin
<10% (30 min)
paenipeptin 9
(199)
C8-Dab-I-Dab-fL-Dab-vL-Dab-NH2f,j
≤0.03o
K. pneumoniae
rifampicin
<10% (30 min)
paenipeptin 15
(199)
Cbz-Dab-I-Dab-fL-Dab-vLS-NH2f,k
≤0.03o
K. pneumoniae
rifampicin
<10% (30 min)
paenipeptin 16
(199)
Cha-Dab-I-Dab-fL-Dab-vLS-NH2f,l
0.06o
K. pneumoniae
rifampicin
<10% (30 min)
dUSCL 2
(201)
C10-K(C10)KKK-NH2m (Figure 4A)
0.07
P. aeruginosa
rifampicin
<10% (1 h)
dUSCL 6
(201)
C10-K(C10)KGK-NH2m (Figure 4A)
0.25
P. aeruginosa
rifampicin
<10% (1 h)
UTBLP 5
(202)
C8-K(C8)KKKK-NH2j (Figure 4B)
≥0.016
P. aeruginosa
novobiocin
NR
UTBLP 6
(202)
C8-K(C8)K(Me)K(Me)K(Me)K(Me)-NH2j (Figure 4B)
0.047
A. baumannii
rifampicin
NR
Lipopeptidomimetic Synergists
dUSTBP 2
(206)
Figure 4C
≥0.250
P. aeruginosa
rifampicin
<10% (1 h)
dUSTBP 5
(206)
Figure 4C
≥0.125
P. aeruginosa
rifampicin
<10% (1 h)
dUSTBP 8
(206)
Figure 4C
≥0.002
A. baumannii
novobiocin
<10% (1 h)
OAK C12(ω7)
(212)
Figure 4D
≤0.073o
E. coli
rifampicin
>10% (3 h)
OAK C12
(212)
Figure 4D
≤0.211o
E. coli
rifampicin
>10% (3 h)
OAK C10
(212)
Figure 4D
≤0.036o
E. coli
rifampicin
<10% (3 h)n
OAK C8
(212)
Figure 4D
≤0.078o
E. coli
rifampicin
<10% (3 h)n
OAK C14(ω5)OOc10O
(213)
Figure 4D
0.20o
K. pneumoniae
rifampicin
<10% (3 h)n
Compound names are provided as
given in the cited literature references.
Lowercase letters indicate d-amino acids.
Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses; NR denotes no data reported.
Bip = biphenylalanine.
Nal = β-naphthylalanine.
Dab = 2,4-diaminobutyric acid.
alle = d-allo-isoleucine.
ΔF = α,β-didehydrophenylalanine.
C6 = hexanoyl.
C8 = octanoyl.
Cbz = benzyloxycarbonyl.
Cha = cyclohexylalanyl.
C10 = decanoyl.
Concentration tested was lower
than 100 μg/mL.
FICI
calculated from MIC values
reported in the cited literature references.
Compound names are provided as
given in the cited literature references.Lowercase letters indicate d-amino acids.Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses; NR denotes no data reported.Bip = biphenylalanine.Nal = β-naphthylalanine.Dab = 2,4-diaminobutyric acid.alle = d-allo-isoleucine.ΔF = α,β-didehydrophenylalanine.C6 = hexanoyl.C8 = octanoyl.Cbz = benzyloxycarbonyl.Cha = cyclohexylalanyl.C10 = decanoyl.Concentration tested was lower
than 100 μg/mL.FICI
calculated from MIC values
reported in the cited literature references.
Cathelicidin Antimicrobial Peptides
The cathelicidins are AMPs that play an important role in the innate
immune defense system of mammals and function by binding to bacterial
membranes, resulting in their destabilization and lysis.[122−125] In addition to their direct antibacterial activity, cathelicidins
have also been found to play a role in recruiting immune cells to
the site of infection as well as in LPS neutralization.[56,122,126] The sole human cathelicidin-AMP
gene encodes for hCAP-18, which is cleaved by proteases into the active
LL-37.[123−125] The mature LL-37 peptide forms an amphipathic
α-helix that, upon interaction with bacterial cell surfaces,
is associated with a detergent-like antimicrobial activity.[127−129] Recently, a truncated version of LL-37, termed FK16, was reported
to potentiate the activity of vancomycin against P. aeruginosa (Table ).[130] Similarly, the Kuipers group showed that another
LL-37-derived sequence, termed KR-12-2, is able to synergize with
azithromycin (and erythromycin, Table ).[131] Further optimization
of the peptide sequence resulted in peptide L11, which was also synthesized
as the d-amino acid variant (D11) as a means of improving
serum stability (Table ).[131,132] These peptides were screened in combination
with multiple antibiotics against different Gram-negative strains,
and OM disruption assays verified their mode of action.[131−133]In addition to the human cathelicidins, derivatives of cathelicidins
from other mammals have also been screened for synergistic activity,
including novicidin (sheep), bactenectin (bovine), and indolicidine
(bovine).[122,134,135] Among these, only novicidin was reported to display potent synergy
(Table ).[134] In the case of bactenectin, which normally
contains a disulfide bridge, a number of linear analogues have been
prepared, including peptides G2, R2, and DP7, which were found to
exhibit OM disruption and moderate synergy (Table ).[135−138] In the case of indolicidin, structure–activity
relationship (SAR) studies have led to the discovery of the synergists
Indopt 10 and CLS001 (Table ). CLS001 is particularly effective and displays synergy with
both vancomycin and azithromycin against multiple Gram-negative pathogens.[135,138] Marketed under the name Omiganan, CLS001 is also much less hemolytic
than indolicidin and is currently in clinical trials for the treatment
of skin-related infections.[102,139,140]
Lactoferrin-Derived Peptides
Lactoferrin
is a multifunctional protein found in mammals and plays key roles
in the human immune system. Lactoferrin has inherent activity against
a range of bacterial, fungal, and viral pathogens, and in the case
of Gram-negative bacteria, it can disrupt the OM.[88] Based on the LPS-binding region of lactoferrin, known as
LF11, the Martínez-de-Tejada group synthesized a series of
LF11 homologues (Table ) that were screened in combination with novobiocin for synergistic
activity.[141] Based on these findings, a
new generation of peptide synergists was designed using PEptide DEscriptors
from Sequence (PEDES) software to predict OM-permeabilizing sequences.[142] The peptides thus obtained (i.e., peptide P2-16, Table ) generally showed
synergistic activity on par with that of the original series.[142] Given the abundance of lactoferrins in other
mammals, Svendsen and co-workers also investigated a series of peptides
derived from bovine lactoferrin for both antimicrobial activity and
synergistic activity.[143−146] This led to the identification of a 12-mer peptide termed P12, along
with P15, a 15-mer containing biphenylalanine (Bip), and a longer
18-mer termed P18, all of which were found to exhibit moderate synergy
with erythromycin when tested against E. coli (Table ).
Thrombin-Derived Peptides
Thrombin
is an enzyme that plays a critical role in coagulation, and recent
studies have also shown that certain thrombin-derived C-terminal peptides
are capable of binding to LPS and neutralizing its toxic and inflammatory
effects.[147] Given the capacity of PMB to
also bind and neutralize LPS, our group was interested in assessing
whether these thrombin-derived peptides might also exhibit the synergistic
behavior of PMBN. To this end, we prepared a series of 12-mer thrombin-derived
peptides and showed that a number of them are, indeed, potent synergists.[148] The most active synergist thus identified (peptide 6, Table )
was further investigated by means of an alanine scan, leading to the
discovery of more potent variants (peptides 14 and 19, Table ). Notably, these peptides were found to be non-hemolytic, and their
synergistic activity was shown to extend to rifampicin, erythromycin,
and novobiocin against multiple Gram-negative strains, including those
with mcr-mediated resistance.[148]
Histatins
The histatins are a unique
group of histidine-rich peptides found in human saliva that play roles
in defending against infection as well as in aiding wound-healing.[149] Among the most common histatins, the 24 amino
acid histatin 5 has been shown to bind Lipid A and has
endotoxin-neutralizing properties.[150] SAR
studies with histatin 5 led to the identification of
a 12-mer sub-region termed P-113 that exhibits antimicrobial activity
against Gram-positive and Gram-negative bacteria.[149,151−153] Further structural optimization to enhance
the stability of P-113 led to analogues incorporating β-naphthylalanine
(Nal) and Bip residues to yield Nal-P-113 and Bip-P-113 and wherein
the 4th, 5th, and 12th histidine resides were replaced by Nal or Bip,
respectively (Table ).[153] Bip-P-113 and Nal-P-113 exhibit
antimicrobial activity and improved serum proteolytic stability, and
they were also found to permeabilize LPSs containing large unilamellar
vesicles used to model the Gram-negative OM.[153,154] These findings prompted investigation of vancomycin potentiation
by Bip-P-113 and Nal-P-113, revealing both to exhibit moderate synergy.[155] However, a notable drawback of Bip-P-113 and
Nal-P-113 is their significantly increased hemolytic activity relative
to that of P-113.[153]
Other Natural AMPs, Their Hybrids, and Derivatives
A number of other naturally occurring AMPs have been reported to
potentiate antibiotics that are otherwise excluded by the OM. These
AMPs are all polycationic and include buforrin II, esculentin 1b,
sphistin, HE2α, HE2β2, anoplin, magainin II, and cecropin
A (Table ).[156−160] The sources of these AMPs are diverse and include toads, wasp venom,
or even the human male reproductive tract.[158,159,161] The AMPs here discussed have
all been reported to disrupt the OM,[157,159,162−164] bind to LPS, and/or show endotoxin-neutralizing
activity.[156,160,165,166] In general, these AMPs exhibit
modest FICIs (0.2–0.36), which has also led to interest in
hybrids and derivatives with enhanced synergistic activity. For example,
Park and co-workers developed a series of hybrid peptide synergists,
termed CAME, CAMA, and HPMA, containing sequences derived from crecopin
A, magainin II, and melittin (Table ).[165,167] Other approaches include truncation, as in the case of the lipopeptide
AMPs tridecaptin A1 and B1 (TriA1 and TriB1), which themselves exhibit potent inherent
anti-Gram-negative activity and, when truncated, were found to be
effective synergists.[168−171] Specifically, removal of the TriA1 N-terminal lipid yielded
H-TriA1, which was found to be much less active as an antibiotic
but exhibited very potent synergism when combined with rifampicin,
resulting in an FICI of 0.002 against E. coli (Table ).[168,169] Like the tridecaptins, the recently discovered paenipeptins contain
a number of Dab residues and have been the subject of SAR studies.[172] These efforts led to the discovery of a potent
paenipeptin-inspired synergist termed SLAP-S25, which effectively
potentiates the activity of rifampicin and vancomycin against E. coli (Table ).[173] In addition to OM disruption,
the binding of SLAP-S25 to LPS and phosphatidylglycerol (PG) was established,
suggesting that SLAP-S25 is also an inner membrane disrupter.[173] This was confirmed by dose-dependent uptake
of propidium iodide and release of cellular contents in cells treated
with SLAP-S25.[173] Notably, SLAP-S25 was
also demonstrated to effectively enhance the in vivo activity of colistin against a colistin-resistant strain of E. coli in both Galleria mellonella and
mouse infection models.[173]Originally
isolated from wasp venom, anoplin is one of the smallest known amphipathic,
α-helical AMPs.[159,161] Multiple SAR investigations
have been performed to improve its antimicrobial activity and stability.[174−178] A recent study with anoplin reported the systematic introduction
of tryptophan and lysine residues to determine the optimal hydrophobicity,
amphipathicity, and number of positive charges required for antibacterial
activity and minimal cytotoxicity.[159] A
number of these analogues were also found to be synergistic when combined
with rifampicin (see peptides A13, A17, and A21 in Table ) via a mechanism involving
OM disruption.[159] A similar study with
mastoparan-C, a peptide found in the venom of the European hornet,
led to the identification of an analogue termed L7A (Table ), which also displays synergy
via OM perturbation.[139] Another example
of a synergist derived from a toxic peptide is myotoxin II, which
is isolated from certain snake venoms. Studies with peptide sequences
based on the C-terminus of myotoxin II resulted in peptide S1 (Table ), which showed a
good balance of synergy with vancomycin and low hemolytic activity.[179,180] Attempts at further improving the S1 peptide involved the introduction
of Nal residues at the C-terminus to generate S1-Nal, which exhibited
enhanced synergistic activity, and S1-Nal-Nal, which also exhibited
enhanced synergistic activity but at the expense of increased hemolytic
activity (Table ).[181−184]
Peptide Synergists Discovered via Library
Screening
Guardabassi and co-workers recently reported the
development and validation of an assay meant to enable high-throughput
screens for identifying OM disruption agents.[185] To this end, they applied a whole-cell screening platform
that allows for detection of OM permeabilization in E. coli based on the signal generated by a chromogenic substrate reporter
for a cytoplasmic β-galactosidase. To validate the assay, a
library of peptides and peptidomimetics was screened, which generated
a notable hit termed peptide 79 that showed potentiation
of various antibiotics at therapeutically relevant levels (Table ).[185] In a follow-up study, the same group went on to develop
two improved synergists, termed peptides 1 and 2, along with the all d-amino acid variants, which
were also found to effectively potentiate rifampicin against K. pneumoniae (Table ).[71,185]
Peptide Synergists from Phage Display
Phage display techniques have also been applied to identify novel
peptides capable of interaction with the OM. In one such investigation,
a phage library displaying random 12-mer peptides was screened for
the ability to bind to the cell surface of Gram-negative bacteria.[186] Specificity for the Gram-negative OM was ensured
by removal of peptides binding to Gram-positive bacteria by pre-incubation
of the library with Staphylococcus aureus.[186] This approach led to the identification of
a peptide termed EC5 that exhibits moderate antibacterial activity
against E. coli and P. aeruginosa, with MICs in the range of 8–16 μg/mL against both.[186] The EC5 peptide was shown to cause OM disruption
and cytoplasmic membrane depolarization while exhibiting very little
hemolytic activity.[186] Subsequent synergy
studies showed that the peptide was also capable of potentiating the
activity of erythromycin, clarithromycin, and telithromycin against P. aeruginosa.[131]
Rationally Designed Peptide Synergists
Inspired by the structure of DAPB (see Figure ), Vaara and co-workers designed a series
of linear and cyclic peptides for evaluation as synergists.[187] The sequences of these peptides were based
on an ABB motif, in which A is a basic
amino acid and B a hydrophobic residue (see peptides 4 and 5, Table ).[187] Cyclic peptides were also
prepared bearing a similar AB motif (see
peptide 7, Table ).[187] All peptides were screened
for synergistic activity with erythromycin, rifampicin, novobiocin,
and fusidic acid, with the rifampicin combinations being the most
potent (Table ).[187] While the synergistic activity of these peptides
could be correlated to their OM-disrupting activity, the effect was
not specific, given their high hemolytic activity.[187]De novo-designed peptides have also
been explored as a means of generating novel synergists. To this end,
the Sahal group developed a number of peptides incorporating key elements
found in AMPs and synergists, including amphipathicity, positive charge,
and helical conformation.[188,189] Of note was the introduction
of α,β-didehydrophenylalanine (ΔF) into the peptides
as a means of constraining the helical conformation of the peptides.[190−192] Using this approach, two peptides termed ΔFm and ΔFmscr
were identified as effective synergists with low toxicity toward mammalian
cells (Table ).In another recent approach to identifying novel peptide synergists,
Yu and colleagues reported the construction of a small library wherein
amphipathic peptides where subjected to a proline-scanning strategy
to generate novel hinged peptides.[193] Such
proline-hinged peptides are reported to have lower toxicity toward
mammalian cells, given that their membrane binding is reduced compared
to that of conventional AMPs with a high α-helical conformation.[194] Proline scanning of two model peptides, LK
(LKKLLKLLKKLLKL) and KL (KLLKLLKKLLKLLK), provided a set
of peptides that were screened for synergistic activity, with the
four most potent peptides displayed in Table . The peptides were also screened for hemolysis,
which led to identification of peptide KL-L9P as the most promising
hit. This peptide was subsequently shown to permeabilize the OM, as
evidenced by uptake of N-phenylnaphthalen-1-amine
(NPN), and was also found to bind LPS without disturbing the inner
membrane.[193] Mouse sepsis studies were
also performed to evaluate the in vivo synergistic
effect of KL-L9P, which displayed a significant potentiation of a
number of clinically used antibiotics and resulted in improved overall
survival.[193]In another recently
reported study, Zeng et al. described the application
of rational design approaches to generate novel helix-forming AMPs
based on cytolytic peptide toxins produced by highly virulent strains
of S. aureus.[195,196] The peptides thus
obtained were shown to have improved physicochemical properties and
antibacterial activity, while maintaining low hemolytic activity and
cytotoxicity. Among the 16-mers thus generated, two peptides, termed
zp12 and zp16, were also found to exhibit potent synergy (Table ). Notable in this
regard is the finding that peptide zp16 specifically potentiates the
effect of the glycopeptide antibiotics vancomycin and teicoplanin
against highly pathogenic K. pneumoniae.[196] The vancomycin-zp16 combination exhibits negligible
toxicity in vitro and in vivo, and
mechanistic studies indicate that zp16 enhances vancomycin’s
cell permeability, leading to markedly reduced biofilm formation and
rapid bactericidal effect.[196]In
2022, the group of Ni reported the potentiation of multiple
antibiotics, including rifampicin, by two rationally designed peptides
named K4 and K5 (Table ).[197] These peptides were selected from
a library of variants all containing a repeating motif, (WRX), wherein X represents I, K, L, F, and W.[198] Hemolysis and cytotoxicity assays led to the
selection of peptides K4 and K5 as leads.[198] The finding that these peptides permeabilize the OM resulted in
follow-up studies on the potentiation of antibiotics against Gram-negative
bacteria.[197] Apart from synergy, a 15-day
resistance assay was also performed for the K4 and K5 peptides, with
or without antibiotics, showing no significant resistance development.[197,198] Also of note, while the inherent activity of K4 was found to be
comparable to that of PMB, K4 was reported to display no in
vivo toxicity when tested as high as 40 mg/kg, while all
mice dosed with PMB at the same concentration died within 24 h.[198]
Lipopeptide Synergists
In addition
to the exclusively peptide-based synergists described above, lipopeptides
have also been explored as synergists. We here cover examples of lipopeptides
that do not possess potent inherent antibacterial activity but rather
have the capacity to effectively potentiate the activity of other
antibiotics. A recent example includes the synthetic paenipeptins
developed by Huang and co-workers.[199] The
design of these lipopeptides is based on peptides produced by Paenibacillus sp. strain OSY-N that contain a number of
unnatural and d-amino acids. Using low hemolytic activity
as a selection criterion, a subset of these lipopeptides were selected
and screened for synergistic activity. This led to the identification
of paenipeptins 1, 9, 15, and 16, which exhibit potent synergy (Table ).[199,200] These lipopeptides
were further shown to have OM-disrupting activity, as indicated by
the NPN assay. Furthermore, in a murine thigh infection model, paenipeptin
1 was shown to effectively potentiate the in vivo activity of both clarithromycin and rifampin against polymyxin-resistant E. coli.[200]Small cationic
lipopeptides have also been explored as synergists, with the aim of
identifying smaller, less hemolytic agents. To this end, Schweizer
and co-workers recently reported a series of dilipid ultrashort cationic
lipopeptides (dUSCLs) capable of enhancing the activity of clinically
used antibiotics against Gram-negative bacteria.[201] The design of these dUSCLs consists of lysine-rich tetrapeptides
bearing various lipids at the N-terminal residue, as illustrated in Figure A. It was found that
dUSCLs bearing lipids of ≥11 carbon atoms caused significant
hemolysis. However, analogues with slightly shorter lipids were found
to achieve an acceptable balance of low hemolytic activity and synergistic
activity. This led to the identification of dUSCLs 2 and 6 as the most promising synergists (Table ) capable of sensitizing a range of Gram-negative
strains to various antibiotics. The authors also noted that, in addition
to permeabilizing the OM, the dUSCLs may also function by indirectly
disrupting antibiotic efflux.[201]
Figure 4
Lipopeptide
and lipopeptidomimetic synergists. Representative structures
of (A) dilipid ultrashort cationic lipopeptides (dUSCLs), (B) ultrashort
tetrabasic lipopeptides (UTBLPs), (C) dilipid ultrashort tetrabasic
peptidomimetics (dUSTBPs), and (D) oligo-acyl-lysyls (OAKs).
Lipopeptide
and lipopeptidomimetic synergists. Representative structures
of (A) dilipid ultrashort cationic lipopeptides (dUSCLs), (B) ultrashort
tetrabasic lipopeptides (UTBLPs), (C) dilipid ultrashort tetrabasic
peptidomimetics (dUSTBPs), and (D) oligo-acyl-lysyls (OAKs).The Schweizer group also recently reported a series
of ultrashort
tetrabasic lipopeptides (UTBLPs) synergists.[202] These compounds were specifically prepared to assess the effect
of lysine N-ζ-methylation on the potentiation
of antibiotics, inspired by reports suggesting that N-methylation can lead to reduced hemolysis, increased proteolytic
stability, and improved antibacterial activity.[203−205] Compared to the dUSCLs, UTBLPs 5 and 6 contain an extra lysine, while an octanoyl group was employed as
the lipophilic moiety (Figure B).[201,202] Methylation of the lysine side
chain resulted in a reduction of potentiation for rifampicin and novobiocin
in both wild-type and resistant Gram-negative strains.[202] A correlation between the number of methyl
groups and loss of activity was seen, while the increase in NPN fluorescence
of the trimethylated UTBLPs was on par with that of their un- or monomethylated
analogues.[202]
Lipopeptidomimetic Synergists
The
Schweizer group also expanded the scope of their dUSCLs by exploring
a series of dilipid ultrashort tetrabasic peptidomimetics (dUSTBPs)
as proteolytically stable alternatives.[206] In a focused SAR study, they prepared dUSTBPs consisting of three
basic amino acids separated by a molecular scaffold, bis(3-aminopropyl)glycine,
along with ligation to simple fatty acids (see Figure C).[206] This led
to identification of a number of dUSTBPs capable of potentiating the
activity of several antibiotics against pathogenic Gram-negative bacteria
while exhibiting low hemolytic activity (Table ). In particular, dUSTBP 8,
consisting of three l-arginine units and a dilipid eight
carbons long, was found to potentiate novobiocin and rifampicin against
multi-drug-resistant (MDR) clinical isolates of P. aeruginosa, A. baumannii, and Enterobacteriaceae species.[206]In 2007, Mor and co-workers
introduced the oligo-acyl-lysyls (OAKs) as peptidomimetics of the
antimalarial peptide dermseptin S3 (Figure D) that were initially evaluated primarily
for antimicrobial activity.[207−209] Among the first series of analogues
prepared, OAK C12(ω7) was found to adhere to the
OM with minimal insertion, and its antibacterial activity against
Gram-negative bacteria improved in combination with ethylenediaminetetraacetate
(EDTA).[209−211] The introduction of a double bond in OAK
C12(ω7) resulted in a significant reduction of hemolytic
activity compared to that of OAK C12, while the slightly
less hydrophobic OAK C10 and OAK C8 analogues
also showed no hemolytic activity.[209,212] In 2013,
these four OAKs, as well as the more recently described OAK C14(ω5)OOc10O, containing ornithine instead
of lysine (Figure D), were reported to potentiate rifampicin against Gram-negative
bacteria (Table ).[212,213] Interestingly, the synergistic activity of the OAKs was maintained
in human plasma but was suppressed by addition of anti-complement
antibodies, suggesting that these compounds sensitize Gram-negative
bacteria to the action of antibacterial innate immune mechanisms.[213]
Cationic Steroids
In 1993, the isolation
of squalamine from tissues of the dogfish
shark Squalus acanthias was reported.[224] Squalamine consists of a steroid core linked
to a spermidine moiety (Figure A) and was found to exhibit broad antimicrobial activity.[224] Later, it was established that squalamine disrupts
membranes and is also hemolytic. Notably, investigations into its
synergistic activity showed that it was unable to potentiate erythromycin
against wild-type strains, showing an effect only against a P. aeruginosa strain overproducing MexAB-OprM efflux pumps
(see Table ).[225,226] A few years after its discovery, novel squalamine mimics (SMs) were
synthesized in an attempt to enhance antibacterial activities (Figure B).[227] These synthetic analogues consist of cholic and deoxycholic
acid as the steroid backbone to which a spermidine chain is appended.
This approach resulted in the identification of analogue SM-7, which
was found to potentiate rifampicin against multiple Gram-negative
bacteria (Table ).[227] However, like squalamine, SM-7 also possesses
significant hemolytic activity, limiting its potential for systemic
use.[227]
Figure 5
Overview of the synergistic steroids (A)
squalamine, (B) squalamine
mimic SM-7, (C) polycationic cholic acid ether-linked steroid synergists,
(D) polycationic cholic acid ester-linked steroid synergists, and
(E) steroid–peptide hybrids.
Table 4
Overview of Synergists Based on Cationic
Steroids
name
ref
FICI
pathogen
antibiotic
hemolytic
activitya
squalamine
(224, 226)
0.35b
P. aeruginosa
erythromycin
>10% (10 min)
SM-7
(227)
0.063
K.
pneumoniae
rifampicin
<10% (24 h)
Polycationic Cholic Acid
Analogues
Ether-linked
I
(229, 230)
0.035
K. pneumoniae
rifampicin
>10% (24 h)
II
(230)
0.029
K. pneumoniae
novobiocin
<10% (24 h)
III
(230)
0.022
K. pneumoniae
novobiocin
>10% (24 h)
IV
(232)
0.13
K. pneumoniae
rifampicin
<10% (24 h)
Ester-Linked
V
(233)
0.057b
E. coli
erythromycin
NR
VI
(233)
0.064b
E. coli
erythromycin
NR
VII
(234)
0.176b
E. coli
erythromycin
<10% (24 h)
Steroid–Peptide
Hybrids
VIII
(239)
0.099
E. coli
erythromycin
NR
IX
(239)
0.093
E. coli
erythromycin
NR
X
(239)
0.078
E. coli
erythromycin
NR
Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses; NR denotes no data reported.
FICI calculated from MIC values
reported in the cited literature references.
Overview of the synergistic steroids (A)
squalamine, (B) squalamine
mimic SM-7, (C) polycationic cholic acid ether-linked steroid synergists,
(D) polycationic cholic acid ester-linked steroid synergists, and
(E) steroid–peptide hybrids.Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses; NR denotes no data reported.FICI calculated from MIC values
reported in the cited literature references.In another approach, the Savage group also employed
the cholic
acid backbone but with the aim of mimicking polymyxins through the
amphiphilic positioning of positive charges (Figure C,D).[228,229] In doing so, a variety
of cationic steroids were developed and screened for inherent antimicrobial
activity as well as the capacity to potentiate antibiotics against
Gram-negative bacteria.[229−237] The hydroxyl groups on the cholic acid backbone provide convenient
functionalities for the incorporation of positively charged moieties
via formation of ether (Figure C) or ester (Figure D) linkages. Among the ether-linked series, an analogue bearing
three carbon atom spacers between the steroid and the primary amine
groups, along with an N-benzylated tertiary amino
group at the C24 position (analogue I, Figure C), was found to exhibit both
inherent antimicrobial activity and synergistic activity.[229] Interestingly, replacement of the lipophilic N-benzyl moiety with a hydroxyl group led to analogue II, which showed a significant reduction of inherent activity
while maintaining a strong ability to potentiate the activity of erythromycin
against E. coli.[228,229] The decreased
lipophilicity of analogue II also reduced the hemolytic
activity seen with analogue I (Table ). Follow-up studies revealed that conversion
of the free hydroxyl group at the C24 position to the propyl ether,
as in analogue III, significantly increased the hemolytic
activity.[230,231] Notably, addition of a terminal
amino group to the propyl ether moiety provided analogue IV, which exhibited significantly reduced hemolysis relative to that
of analogue III while maintaining effective synergistic
activity (Table ).[232] A series of ester-linked analogues were also
prepared by the Savage group (Figure D), wherein compounds V, VI, and VII exhibited synergistic activity comparable
to that of the corresponding ether variants (Table ).[233,234] Amide analogues were
also explored; however, they exhibited a significant lower potentiation
of erythromycin, presumably due to conformational constraints, relative
to the more active esters.[233]In
addition to the polycationic steroids described above, steroid–peptide
hybrids have also been explored as synergists.[237−239] In one case, Bavikar et al. reported a series of hybrids wherein
simple tetrapeptides were coupled to cholic acid in an attempt to
mimic the squalamine tail (Figure E).[239] As indicated in Table , these steroid–peptide
hybrids exhibit potent synergy with erythromycin against E.
coli. While the hemolytic activity of these compounds was
not reported, they were described as having low cytotoxicity toward
HEK293 and MCF-7 cells.[239]
Non-steroid Small-Molecule Synergists
Synergists Based on Approved Drugs
Recently, Brown and co-workers reported an innovative screening platform
for the identification of non-lethal, OM-active compounds with potential
as adjuvants for conventional antibiotics.[240] They applied their screen to a library of 1440 previously approved
drugs, which resulted in the identification of three hits. Among the
three hits identified, the anti-protozoal agent pentamidine (Figure A) was subsequently
found to display the highest synergistic potency (Table ).[240] Notably, while pentamidine’s OM-targeting mechanism was found
to be driven by interaction with LPS, mcr-resistance
did not affect its synergistic potential.[240] The potentiation of novobiocin by pentamidine was also established in vivo against wild-type and resistant A. baumannii.[240] Subsequently, a focused SAR study
using commercially available bis-amidines similar in structure to
pentamidine led to the identification of compound 9 as
an even more potent synergist (Figure a and Table ).[240]
Figure 6
Representative structures
of recently reported (A) bis-amidine
synergists and (B) metformin.
Table 5
Overview of Non-steroid Small-Molecule
Synergists
namea
ref
FICI
pathogen
antibiotic
hemolytic
activityb
Synergists Based on Approved
Drugs
pentamidine
(240, 241)
0.25
E. coli
rifampicin
<10% (20 h)
compound 9
(240, 241)
<0.047
E. coli
rifampicin
>10% (20 h)
compound 21
(241)
≤0.094
E. coli
rifampicin
<10% (20 h)
compound 38
(241)
≤0.039
E. coli
rifampicin
>10% (20 h)
compound P35
(242)
0.094
A. baumannii
novobiocin
<10% (45 min)c
metformin
(245)
0.375
E. coli
vancomycin
<10% (1 h)
High-Throughput Screening
Hits
MAC-0568743
(246)
≤0.16
E. coli
rifampicin
NR
liproxstatin-1
(246)
0.25d
E. coli
rifampicin
NR
BWC-Aza1
(247)
0.258
E. coli
rifampicin
<10% (45 min)
BWC-Aza2
(247)
0.06
A. baumannii
rifampicin
<10% (45 min)
Peptidomimetics
OAK C12(ω7)
(212)
≤0.073d
E. coli
rifampicin
>10% (3 h)
OAK
C12
(212)
≤0.211d
E. coli
rifampicin
>10% (3 h)
OAK
C10
(212)
≤0.036d
E. coli
rifampicin
<10% (3 h)c
OAK C8
(212)
≤0.078d
E. coli
rifampicin
<10% (3 h)c
C14(ω5)OOC10O
(213)
0.20d
K. pneumoniae
rifampicin
<10% (3 h)c
dUSTBP 2
(206)
≥0.250
P. aeruginosa
rifampicin
<10% (1 h)
dUSTBP 5
(206)
≥0.125
P. aeruginosa
rifampicin
<10% (1 h)
dUSTBP 8
(206)
≥0.002
A. baumannii
novobiocin
<10% (1 h)
Synergists with a Polyamine Motif
d-LANA-14
(249, 250)
0.09
P. aeruginosa
rifampicin
<10% (1 h)
naphthylacetylspermine
(251)
0.125d
E. coli
novobiocin
nr
bisacyl-homospermine 8a
(253)
0.304d
E. coli
rifampicin
<10% (30 min)
bisacyl-homospermine 8b
(253)
0.297d
E. coli
rifampicin
>10% (30 min)
spermidine analogue 14
(258)
0.255d
E. coli
erythromycin
<10% (1 h)c
spermidine analogue 17
(258)
0.255d
P. aeruginosa
erythromycin
<10% (1 h)c
600-Da BPEI
(261, 275)
0.26
P.
aeruginosa
erythromycin
<10% (1 h)
Plant-Derived Synergists
eugenol
(262, 276)
≤0.2d
P. aeruginosa
rifampicin
<10% (24 h)
linalool
(263, 277)
0.37
E.
coli
erythromycin
<10% (4 h)
thymol
(271, 278)
0.25
E.
coli
erythromycin
<10% (1 h)
cinnamaldehyde
(271, 279)
0.24
E.
coli
erythromycin
<10% (48 h)
trans-cinnamic
acid
(272, 280)
0.36
E. coli
erythromycin
<50% (1 h)
ferulic acid
(272, 280)
0.48
E.
coli
erythromycin
<50% (1 h)
3,4-dimethoxycinnamic acid
(272, 280)
0.42
E.
coli
erythromycin
<50% (1 h)
2,4,5-trimethoxycinnamic
acid
(272, 280)
0.22
E. coli
erythromycin
<50% (1 h)
Compound names are provided as
given in the cited literature references.
Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses; NR denotes no data reported.
Concentration tested was lower than
100 μg/mL.
FICI calculated
from MIC values
reported in the cited literature references.
Representative structures
of recently reported (A) bis-amidine
synergists and (B) metformin.Compound names are provided as
given in the cited literature references.Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses; NR denotes no data reported.Concentration tested was lower than
100 μg/mL.FICI calculated
from MIC values
reported in the cited literature references.Inspired by these findings, our group recently undertook
a broad
SAR investigation wherein a number of structurally unique bis-amidines
were synthesized and evaluated as synergists.[241] Specifically, we focused our attention on the length and
rigidity of the linker motif as well as the geometry of the amidine
groups on the aromatic rings. In addition to assessing the synergistic
activity of the new bis-amidines prepared, we also performed hemolysis
assays with each compound to ascertain OM selectivity. Given the potent
synergy previously reported for bis-amidine 9,[240] we also synthesized it to use as a benchmark.
Among the compounds prepared in our study, bis-amidine 21, containing an ortho-substituted benzene linker,
was found to be significantly more synergistic than pentamidine and
displayed no hemolytic activity (Figure A and Table ).[241] We also found that
the introduction of additional aromatic groups to the linker, such
as in compound 38, led to further enhancement of synergy;
however, this came at the cost of increased hemolytic activity (Table ). Interestingly,
our studies also revealed benchmark bis-amidine 9 to
be hemolytic. These findings further highlight the importance of assessing
OM selectivity when pursuing synergists.[241]The Brown group also recently reported a follow-up SAR study
aimed
at further enhancing the therapeutic potential of bis-amidine synergists.[242] Similar to our own SAR study, the rigidity,
conformational flexibility, and lipophilicity were further explored.
In addition, the roles of chirality and charge were also investigated.[242] A key focus of this study was to identify bis-amidine
synergists with improved off-target effects relative to those of pentamidine,
especially the QT prolongation resulting from its effect on the hERG
ion channel.[242−244] This led to compound P35, which
was shown to have the same synergistic mode of action as pentamidine;
it displayed a strong potentiation of novobiocin and no hemolytic
activity (Table ).
Furthermore, compound P35 outperformed pentamidine on
multiple levels: an improvement in cytoxicity, a higher efficacy in
a mouse infection model, and reduced hERG inhibition.[242]Wang and co-workers also recently reported
a study wherein the
Prestwick Chemical Library, comprising 158 FDA-approved drugs, was
assessed for compounds exhibiting synergy with doxycycline.[245] This led to the finding that metformin, a commonly
prescribed anti-diabetic agent (Figure B), effectively potentiates vancomycin as well as tetracycline
antibiotics, particularly doxycycline and minocycline, against MDR S. aureus, Enterococcus faecalis, E. coli, and Salmonella enteritidis.[245] The capacity for metformin to disturb the OM
was assessed using the NPN assay, revealing an increase in E. coli OM permeability in a dose-dependent manner. Of particular
note was the finding that metformin was also able to fully restore
the activity of doxycycline in animal infection models.[245]
Small-Molecule Synergists via High-Throughput
Screening
Following the success in applying their OM perturbation
reporter assay to identify pentamidine as a potent synergist, the
Brown group applied the same approach in a much larger high-throughput
screening (HTS) campaign with a library of ca. 140 000 synthetic compounds.[240,246] This, in turn, led to the identification of 39 hits that were subsequently
screened for synergistic activity with rifampicin.[246] Among these hits, MAC-0568743 and liproxstatin-1 (Figure A) were found to
be particularly active synergists (Table ).[246] Both compounds
were found to potentiate the activity of the Gram-positive-targeting
antibiotics rifampicin, novobiocin, erythromycin, and linezolid. This
potentiation was further shown to be due to selective disruption of
the OM, driven by interactions with LPS, and neither compound impacted
the inner membrane.[246]
Figure 7
Non-steroid small-molecule
synergists: (A) synergists identified
via HTS, (B) azaindole synergists, (C) d-LANA-14 based on
a norspermidine core linked to two d-lysine residues and
a central tetradecanoyl moiety, (D) joro spider toxin-inspired naphthylacetylspermine,
(E) bisacyl-homospermines, (F) indole-3-acrylamidospermine conjugates,
and (G) representation of 600 Da branched polyethylenimine (BPEI).
Non-steroid small-molecule
synergists: (A) synergists identified
via HTS, (B) azaindole synergists, (C) d-LANA-14 based on
a norspermidine core linked to two d-lysine residues and
a central tetradecanoyl moiety, (D) joro spider toxin-inspired naphthylacetylspermine,
(E) bisacyl-homospermines, (F) indole-3-acrylamidospermine conjugates,
and (G) representation of 600 Da branched polyethylenimine (BPEI).In another recently reported campaign, Datta and
co-workers screened
a focused library of 3000 drug-like compounds for antibiotic synergy
using a whole-cell-based phenotypic assay.[247] This led to the identification of a series of azaindoles that potentiate
the MICs of novobiocin and rifampicin by 100–1000-fold vs Gram-negative
bacteria. Optimization studies led to compounds BWC-Aza1 and BWC-Aza2
(see Figure B), both
of which were screened for synergistic activity with an extensive
panel of antibiotics against E. coli (Table ). The OM-permeabilizing activity
of the azaindoles was also probed using the NPN assay, revealing dose-dependent
disruption.[247]
Small-Molecule Polyamine Synergists
In recent years, the polyamines norspermine and norspermidine have
been explored as starting points for the development of antibacterial
and antibiofilm agents.[248,249] Building on this work,
the Haldar group recently reported the development of d-LANA-14,
composed of a norspermidine core linked to two d-lysines,
along with conjugation to a tetradecanoyl chain at the central secondary
amine (Figure C).[250]d-LANA-14 showed potent synergy with
tetracycline or rifampicin against meropenem-resistant A.
baumannii and P. aeruginosa clinical isolates
(Table ) and, importantly,
was also found to disrupt established biofilms formed by these pathogens.[250]d-LANA-14 was shown to perturb the
OM by means of the NPN assay and, importantly, was also found to exhibit
potent in vivo activity when combined with rifampicin,
resulting in a significant reduction of bacterial burden in a mouse
model of burn-wound infection.[250]In another study involving small-molecule polyamines, Katsu and co-workers
investigated synthetic analogues of the joro spider toxin as OM-disrupting
agents, leading to the identification of naphthylacetylspermine (Figure D), which was found
to potentiate the activity of novobiocin against E. coli (Table ).[251] Mechanistic studies revealed that administration
of naphthylacetylspermine causes OM disruption, which was attributed
to displacement of LPS-associated Ca2+. In addition, naphthylacetylspermine
was found to promote cellular uptake of the tetraphenylphosphonium
(TPP+), indicating membrane permeabilization, a finding
similar to that obtained with PMBN.[251,252] Interestingly,
spermidine and spermine were also found to induce loss of Ca2+ but did not cause uptake of TPP+, pointing to the importance
of the naphthyl moiety for membrane permeabilization.[252] Given that no hemolysis data was reported for
naphthylacetylspermine, it is not possible to assess the selectively
of its OM activity.The David group also reported the development
of acylated polyamines
as LPS neutralizing agents capable of functioning as OM-disrupting
synergists.[253−255] A series of monoacyl- and bisacyl-homospermines
were prepared and evaluated as potentiators of rifampicin, resulting
in the identification of two potent synergists, compounds 8a and 8b (see Figure E and Table ).[253] A clear correlation between
the length of the lipophilic tail and hemolytic activity was seen,
with compound 8a appearing to strike an optimal balance.[253] Using a similar approach, Copp and co-workers
introduced the indole-3-acrylamido-spermine conjugates inspired by
a class of indole-spermidine alkaloid natural products.[256,257] An SAR study led to the development of spermidine analogues like 14 and 17, which exhibited effective synergy
with various antibiotics (Figure F and Table ).[256,258] These compounds affect bacterial
membrane integrity and show low cytotoxicity and hemolytic activity.
Interestingly, compound 14 was also found to inhibit
bacterial efflux pumps, suggesting that the potentiation of antibiotics
by these compounds may be attributed to a dual mechanism of action.[256,258]Given the inclusion criteria noted in the introduction, only small-molecule synergists (MW under 1500
kDa) are included
in this Review, and as such we do not discuss larger polycationic
polymers even though some have been shown to exhibit synergistic activity.[90−96,259,260] It is noteworthy, however, that branched polyethylenimine (BPEI)
with a MW of 600 Da shows synergistic activity (Figure G, Table ) and can also eradicate biofilms when co-administered
with a variety of antibiotics.[261] Mechanistic
studies using isothermal titration calorimetry and fluorescence spectroscopy
indicate that, at the concentration required for antibiotic potentiation,
600 Da BPEI reduces diffusion barriers from LPS without disrupting
the OM itself.[261]
Plant-Derived Synergists
A number
of plant-derived compounds have also been reported to potentiate the
activity of antibiotics against Gram-negative bacteria (Table ). These include natural products
like eugenol, a major component of clove oil; linalool, which can
be isolated from coriander; thymol, which is extracted from thyme;
and cinnamaldehyde and cinnamic acid, which are found in the bark
and leaves of the cinnamon tree (Figure ).[262−268] Important to note is that only pure compounds derived from plants
are included in our assessment. We refer the reader to other reviews
on the synergistic activity of essential oils or crude extracts.[269,270] Notably, most plant-derived compounds reported to potentiate antibiotics
against Gram-negative bacteria are not cationic, setting them apart
from most other synergists. Despite their lack of positive charge,
a number of investigations have shown that the synergy associated
with these compounds is a function of their ability to induce OM permeabilization
(Table ).[262,263,271−273] The broad range of biological activities associated with cinnamic
acid and its derivatives, including ferulic acid, 3,4-dimethoxycinnamic
acid, and 2,4,5-trimethoxycinnamic acid (Figure ), has been recently reviewed including synergistic
effects associated with OM disruption.[274] Interestingly, despite its clear structural similarities with cinnamic
acid, studies with cinnamaldehyde suggest that it may operate via
a different synergistic mechanism. Unlike cinnamic acid, cinnamaldehyde
does not increase OM permeabilization based on the NPN assay, but
it does exhibit synergistic effects with erythromycin and novobiocin
(Table ).[271,273]
Figure 8
Plant-derived
natural products reported to potentiate the activity
of antibiotics against Gram-negative bacteria.
Table 6
Overview of Synergists Based on Clinically
Used Antibiotics
namea
ref
FICI
pathogen
antibiotic
hemolytic
activityb
Tobramycin Derivatives
TOB-MOX 1
(291)
0.125
P. aeruginosa
novobiocin
<10% (30 min)
tobramycin-ciprofloxacin 1e
(292)
<0.04
P. aeruginosa
rifampicin
<10% (30 min)
tobramycin-rifampicin 1
(293)
0.28
P. aeruginosa
rifampicin
<10% (1 h)
tobramycin-rifampicin 2
(293)
0.15
P. aeruginosa
erythromycin
<10% (1 h)
tobramycin-rifampicin 3
(293)
0.06
P. aeruginosa
erythromycin
<10% (1 h)
tobramycin-lysine 3
(294)
0.008
P. aeruginosa
novobiocin
<10% (1 h)
TOB-NMP 1
(296)
≥0.008
P. aeruginosa
rifampicin
<10% (30 min)
TOB-PAR 2
(296)
≥0.008
P. aeruginosa
rifampicin
<10% (30 min)
tobramycin homodimer 1
(297)
0.07
P. aeruginosa
novobiocin
<10% (1 h)
tobramycin homodimer 2
(297)
0.08
P. aeruginosa
novobiocin
<10% (1 h)
tobramycin homodimer 3
(297)
0.05
P. aeruginosa
novobiocin
<10% (1 h)
tobramycin-cyclam 1
(298)
0.13
P. aeruginosa
novobiocin
<10% (30 min)
tobramycin-cyclam 2
(298)
0.13
P. aeruginosa
novobiocin
<10% (30 min)
tobramycin-cyclam 3
(298)
0.08
P. aeruginosa
novobiocin
<10% (30 min)
Nebramine Derivatives
NEB-MOX 1a
(299)
≥0.002
K. pneumoniae
rifampicin
NR
NEB-CIP 1b
(299)
≥0.008
P. aeruginosa
rifampicin
<10% (1 h)
NEB-NMP 2
(299)
≥0.004
P. aeruginosa
rifampicin
NR
nebramine-cyclam
(300)
0.25
P.
aeruginosa
rifampicin
<10% (1 h)
Levofloxacin–Polybasic Peptide Conjugates
levofloxacin conjugate 10
(301)
0.10
P. aeruginosa
rifampicin
<10% (1 h)
levofloxacin conjugate 11
(301)
0.10
P. aeruginosa
novobiocin
<10% (1 h)
levofloxacin conjugate 12
(301)
0.08
P. aeruginosa
novobiocin
<10% (1 h)
Compound names are provided as
given in the cited literature references.
Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses; NR denotes no data reported.
Plant-derived
natural products reported to potentiate the activity
of antibiotics against Gram-negative bacteria.Compound names are provided as
given in the cited literature references.Non-hemolytic is defined as <10%
hemolysis compared to positive control, with incubation times denoted
in parentheses; NR denotes no data reported.
Antibiotic-Derived Synergists
In general,
the antibiotic potentiators discussed above show little
to no inherent antibacterial activity. There are, however, a number
of reports describing antibacterial compounds that also exhibit OM-disrupting
effects and, in doing so, synergize with antibiotics that are otherwise
inactive toward Gram-negative bacteria. The synergists described in
this section are specifically included on the basis of their OM-disrupting
activity rather than a contribution of their inherent activity to
synergy. We therefore do not include the combination of rifampicin
with imipenem or trimethoprim, which is solely based on functional
synergy.[281,282] In addition, we also do not
cover reports describing systems where an OM-perturbing motif like
PMBN is covalently linked to another antibiotic as a means of enhancing
anti-Gram-negative activity.[39,283−285]
Tobramycin-Derived Synergists
Tobramycin
(Figure A) belongs
to the aminoglycoside class of antibiotics that function by inhibiting
ribosomal protein synthesis in bacteria. Recent studies have also
revealed that aminoglycosides like tobramycin also interact with bacterial
membranes by specifically binding to LPS and, in doing so, cause membrane
depolarization.[286−290] Building on these insights, Schweizer and co-workers prepared and
assessed a number of conjugates wherein one tobramycin molecule is
linked to a second antibiotic, providing hybrid systems that possess
both inherent antibacterial activity and potent synergy with other
antibiotics (Figure A).[291−294,283,295−301] Among the first hybrids prepared was a series tobramycin–fluoroquinolone
conjugates.[291,292] Both the optimal sites of conjugation
and linker lengths between the two antibiotics were investigated,
revealing TOB-MOX, a tobramycin–moxifloxacin hybrid, and tobramycin–ciprofloxacin
conjugate 1e to be potent synergists (Table ).[292] OM disruption was confirmed for both hybrids using the NPN assay,
and both were found to potentiate multiple antibiotics, including
rifampicin, erythromycin, novobiocin, and vancomycin.[291,292] Also of note was the finding that these hybrids exhibited a significantly
reduced capacity to inhibit protein translation compared to that of
tobramycin.[291,292] Conversely, the hybrids were
found to maintain, and in some cases exceed, the gyrase-inhibiting
activity of the parent fluoroquinolones.[291,292] Another series of hybrids was prepared by coupling tobramycin with
rifampicin, which targets the bacterial RNA polymerase.[293] As for the fluoroquinolone conjugates, the
inherent activity of the tobramycin–rifampicin conjugates was
significantly reduced compared to that of the parent antibiotics.
Again, however, some hybrids were found to exhibit synergy via an
OM-disrupting mechanism (see tobramycin–rifampicins 1–3, Figure A).[292−294,302]
Figure 9
Synergists
based on clinically used antibiotics: (A) tobramycin
(TOB) conjugates, (B) nebramine (NEB) analogues, and (C) polybasic
conjugated levofloxacin hybrids.
Synergists
based on clinically used antibiotics: (A) tobramycin
(TOB) conjugates, (B) nebramine (NEB) analogues, and (C) polybasic
conjugated levofloxacin hybrids.A number of other hybrids have also been reported
by the Schweizer
group wherein tobramycin was coupled to various other small molecules
known to engage with different bacterial targets. In one case, tobramycin
was coupled to a lysine-based amphiphile known to function as a membrane
permeabilizer (see tobramycin–lysine 3, Figure A).[294,303] This conjugate was found to effectively potentiate the activity
of novobiocin, erythromycin, and vancomycin (Table ).[294,304] The same group also
explored hybrids wherein tobramycin was coupled to small-molecule
efflux pump inhibitors such as 1-(1-naphthylmethyl)piperazine (NMP)
and paroxetine (PAR) (Figure A).[45,295,305−307] Along with potent synergy against P. aeruginosa (Table ), these hybrids were also found to cause OM disruption and
inner membrane depolarization.[295,296] Two additional generations
of tobramycin conjugates were also reported: tobramycin homodimers
and tobramycin coupled to chelating cyclams (Figure A).[297,298] The dimerization of
tobramycin was conveniently achieved by means of copper-catalyzed
azide–alkyne click chemistry, resulting in potent synergists
that also exhibit enhanced OM disruption relative to tobramycin itself
(Table ).[297] A combination of novobiocin and tobramycin
homodimer 1 (both administered at 50 μg/mL) was
further shown to have in vivo efficacy against A. baumannii in a wax worm larvae model.[297] Studies with the corresponding monomeric tobramycin azide
and alkyne precursors revealed neither to be synergistic, underscoring
the need for dimerization to achieve synergy.[297] In the case of the tobramycin–cyclam conjugates,
the introduction of the cyclam chelating group was hypothesized to
aid in the OM permeabilization by sequestration of divalent cations
bridging the Lipid A phosphate groups.[298,308−310] While tobramycin–cyclam hybrids 1–3 effectively potentiated novobiocin, rifampicin, vancomycin,
and erythromycin (Table ), it is also particularly noteworthy that they also enhanced the
activity of meropenem against both carbapenem-resistant and -sensitive
strains.[298] This effect was abrogated by
the addition of excess MgCl2, further supporting a mode
of action driven by OM disruption.[298]
Nebramine-Derived Synergists
Following
on their work with tobramycin hybrids, the Schweizer group also prepared
a number of analogous nebramine conjugates (Figure B). Nebramine (NEB) is a disaccharide sub-unit
of tobramycin that interestingly displays activity against tobramycin-resistant
strains and also interacts with the OM.[287,311−317] The NEB hybrids synthesized included conjugates with moxifloxacin
(MOX), ciprofloxacin (CIP), NMP, and cyclam (Figure B).[299,300] These hybrids were
all found to effectively potentiate the activity of multiple classes
of antibiotics against a range of Gram-negative bacteria (Table ). Furthermore, NEB-MOX
1a, NEB-CIP 1b, and NEB-NMP 2 were also reported to dissipate proton
motive force and proposed to cause OM disruption, as for the corresponding
tobramycin conjugates.[291,294,295,299,300]
Levofloxacin–Polybasic Peptide Conjugates
as Synergists
Schweizer and co-workers also recently reported
another class of antibiotic-based synergists, consisting of levofloxacin
conjugated to polybasic peptides of varying lengths (Figure C).[301] While these levofloxacin–peptide hybrids were found to be
non-hemolytic, they were also shown to be essentially devoid of inherent
antimicrobial activity (MICs typically >128 μg/mL). They
did,
however, exhibit strong potentiation of numerous antibiotics against
MDR clinical isolates of P. aeruginosa, E.
coli, K. pneumoniae, and, to a lesser extent, A. baumannii (Table ).[301] Preliminary mechanistic studies
indicate that these conjugates potentiate other antibiotics both by
blocking active efflux and by permeabilization of the OM.[301]
Chelating Agents as OM-Disrupting Synergists
The activity of antibiotics can also be potentiated by chelating
agents that disturb the integrity of the OM by sequestering the divalent
cations Mg2+ or Ca2+ coordinated by the phosphate
groups of the lipid A core of LPS (Figure B).[32] The pre-eminent
chelating agent, EDTA (Figure ), is a well-described synergist, and its reported
ability to potentiate antibiotics actually pre-dates the reported
synergistic activity of PMBN.[49,318−321] Exposure of Gram-negative bacteria to EDTA is accompanied by the
significant release of LPS and, as for treatment with PMBN, also results
in the increased uptake of NPN.[322−324] While the potentiating
effects of EDTA on antibiotics such as novobiocin and rifampicin are
well documented, FICI values have not been reported in literature
and cannot be readily calculated from published data.[320,321,323,325] Similarly, for the other chelating agents here discussed, no FICI
values could be found in the literature, and, as such, we do not provide
a summary table as was done for the other synergists discussed in
this Review.
Figure 10
Chelating agents with demonstrated synergistic activity.
Chelating agents with demonstrated synergistic activity.In additional to his seminal work with PMBN, Vaara
also reported
the potentiation of hydrophobic antibiotics by sodium hexametaphosphate
(HMP, Figure ) against
Gram-negative bacteria as well as the increase in NPN uptake in cells
treated with this potent Ca2+-binding agent.[326] In a similar study, Ayres and Russell also
described sodium polyphosphates as potent synergists with several
antibiotics (structures not shown).[327] In
the same study, citric acid (Figure ) was also demonstrated to exhibit synergistic activity
with erythromycin, novobiocin, rifampicin, methicillin, and gentamicin.[327] In addition, 2,3-dimercaptosuccinic acid (Figure ), clinically used
in the treatment of lead intoxication, was also found to potentiate
the activity of hydrophobic antibiotics.[323] The synergistic activity of 2,3-dimercaptosuccinic acid was attributed
to an OM-permeabilizing mechanism, as evidenced by increased NPN uptake
in bacterial cells treated with the compound.[323]
Concluding Remarks
New strategies are required to address
the growing threat posed
by MDR Gram-negative pathogens. To this end, a large and growing number
of synergists capable of potentiating Gram-positive-specific antibiotics
against Gram-negative bacteria have been described in the literature
to date. Within this Review, we provide the reader with a comprehensive
and up-to-date overview of those synergists reported to have a demonstrated
OM-targeting mechanism. We also draw attention to the importance of
selective OM disruption, a factor that has often been overlooked by
researchers when characterizing their synergists. In this regard,
and based on our assessment of the literature, the majority of hemolysis
studies reported for such synergists use relatively short incubation
times compared to the incubation times actually used in assessing
synergy (i.e., in checkerboard assays). Based on our own experience,
not only is the concentration at which hemolysis is assessed relevant,
but incubation time can also make a significant difference in describing
a compound as hemolytic or not. For example, in cases where 5% hemolysis
is reported after 1 h, it is our experience that such compounds are
often much more hemolytic after overnight incubation. For this reason,
we have included both the concentrations and incubation times of the
synergists described in this Review. Doing so provides for a more
honest and accurate assessment of the OM specificity of these synergists.To provide a means of comparing the relative activity of the synergists
here summarized, we have emphasized their FICI values, a descriptor
broadly applied as a scale to quantify synergistic potency. However,
another important consideration that is not directly revealed by the
FICI is, of course, the concentration at which a synergist actually
potentiates the companion antibiotic. As for the concentrations of
the antibiotics being potentiated, we suggest using the corresponding
Gram-positive breakpoints as a guide for assessing whether the synergistic
MICs determined against Gram-negative bacteria (for which Gram-positive
antibiotics have no breakpoint) are within therapeutically relevant
concentrations. Also related to this is the importance of the pharmacokinetic/pharmacodynamic
(PK/PD) profile of the synergist and how well it matches that of the
antibiotic it potentiates. Given that the vast majority of antibiotic
synergists reported to date have only been characterized using cell-based in vitro and biochemical assays, we have not touched on
this. Clearly, significant in vivo studies are needed
to establish and optimize such parameters and will be essential to
the (pre)clinical development of any such synergist. It is also notable
that OM-perturbing synergists have been investigated as a means of
enhancing the effect of other multi-drug cocktails, further underscoring
the importance of such PK/PD considerations. Specifically, addition
of the polymyxin-derived SPR741 has recently been studied as a means
of enhancing the activity of β-lactam/β-lactamase inhibitor
combinations such as piperacillin–tazobactam.[328] Given the challenges associated with developing anti-Gram-negative
agents and therapeutic strategies, the pursuit of antibiotic synergists
is likely to remain an active field of research for the years to come.
Authors: Stephen A Cochrane; Christopher T Lohans; Jeremy R Brandelli; George Mulvey; Glen D Armstrong; John C Vederas Journal: J Med Chem Date: 2014-01-30 Impact factor: 7.446
Authors: Craig R MacNair; Jonathan M Stokes; Lindsey A Carfrae; Aline A Fiebig-Comyn; Brian K Coombes; Michael R Mulvey; Eric D Brown Journal: Nat Commun Date: 2018-01-31 Impact factor: 14.919