Literature DB >> 33951592

NMR illuminates intrinsic disorder.

H Jane Dyson1, Peter E Wright2.   

Abstract

Nuclear magnetic resonance (NMR) has long been instrumental in the characterization of intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs). This method continues to offer rich insights into the nature of IDPs in solution, especially in combination with other biophysical methods such as small-angle scattering, single-molecule fluorescence, electron paramagnetic resonance (EPR), and mass spectrometry. Substantial advances have been made in recent years in studies of proteins containing both ordered and disordered domains and in the characterization of problematic sequences containing repeated tracts of a single or a few amino acids. These sequences are relevant to disease states such as Alzheimer's, Parkinson's, and Huntington's diseases, where disordered proteins misfold into harmful amyloid. Innovative applications of NMR are providing novel insights into mechanisms of protein aggregation and the complexity of IDP interactions with their targets. As a basis for understanding the solution structural ensembles, dynamic behavior, and functional mechanisms of IDPs and IDRs, NMR continues to prove invaluable.
Copyright © 2021 Elsevier Ltd. All rights reserved.

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Year:  2021        PMID: 33951592      PMCID: PMC8530845          DOI: 10.1016/j.sbi.2021.03.015

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   7.786


  72 in total

1.  Local and Global Dynamics in Intrinsically Disordered Synuclein.

Authors:  Nasrollah Rezaei-Ghaleh; Giacomo Parigi; Andrea Soranno; Andrea Holla; Stefan Becker; Benjamin Schuler; Claudio Luchinat; Markus Zweckstetter
Journal:  Angew Chem Int Ed Engl       Date:  2018-10-18       Impact factor: 15.336

2.  FBP21's C-Terminal Domain Remains Dynamic When Wrapped around the c-Sec63 Unit of Brr2 Helicase.

Authors:  Jana Sticht; Miriam Bertazzon; Lisa M Henning; Jan R Licha; Esam T Abualrous; Christian Freund
Journal:  Biophys J       Date:  2018-11-29       Impact factor: 4.033

3.  The Ambivalent Role of Proline Residues in an Intrinsically Disordered Protein: From Disorder Promoters to Compaction Facilitators.

Authors:  Borja Mateos; Clara Conrad-Billroth; Marco Schiavina; Andreas Beier; Georg Kontaxis; Robert Konrat; Isabella C Felli; Roberta Pierattelli
Journal:  J Mol Biol       Date:  2019-11-30       Impact factor: 5.469

Review 4.  Intrinsically disordered proteins in cellular signalling and regulation.

Authors:  Peter E Wright; H Jane Dyson
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01       Impact factor: 94.444

5.  Interaction of Huntingtin Exon-1 Peptides with Lipid-Based Micellar Nanoparticles Probed by Solution NMR and Q-Band Pulsed EPR.

Authors:  Alberto Ceccon; Thomas Schmidt; Vitali Tugarinov; Samuel A Kotler; Charles D Schwieters; G Marius Clore
Journal:  J Am Chem Soc       Date:  2018-05-14       Impact factor: 15.419

6.  Mapping the interactions of adenoviral E1A proteins with the p160 nuclear receptor coactivator binding domain of CBP.

Authors:  Peter Haberz; Munehito Arai; Maria A Martinez-Yamout; H Jane Dyson; Peter E Wright
Journal:  Protein Sci       Date:  2016-10-15       Impact factor: 6.725

7.  Solvent-dependent segmental dynamics in intrinsically disordered proteins.

Authors:  Nicola Salvi; Anton Abyzov; Martin Blackledge
Journal:  Sci Adv       Date:  2019-06-28       Impact factor: 14.136

8.  NMR characterization of solvent accessibility and transient structure in intrinsically disordered proteins.

Authors:  Christoph Hartlmüller; Emil Spreitzer; Christoph Göbl; Fabio Falsone; Tobias Madl
Journal:  J Biomol NMR       Date:  2019-07-11       Impact factor: 2.835

9.  Robust Cell-Free Expression of Sub-Pathological and Pathological Huntingtin Exon-1 for NMR Studies. General Approaches for the Isotopic Labeling of Low-Complexity Proteins.

Authors:  Anna Morató; Carlos A Elena-Real; Matija Popovic; Aurélie Fournet; Karen Zhang; Frédéric Allemand; Nathalie Sibille; Annika Urbanek; Pau Bernadó
Journal:  Biomolecules       Date:  2020-10-19

10.  Ensemble description of the intrinsically disordered N-terminal domain of the Nipah virus P/V protein from combined NMR and SAXS.

Authors:  Marco Schiavina; Edoardo Salladini; Maria Grazia Murrali; Giancarlo Tria; Isabella C Felli; Roberta Pierattelli; Sonia Longhi
Journal:  Sci Rep       Date:  2020-11-11       Impact factor: 4.379

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  13 in total

1.  15N-Detected TROSY NMR experiments to study large disordered proteins in high-field magnets.

Authors:  Abhinav Dubey; Thibault Viennet; Sandeep Chhabra; Koh Takeuchi; Hee-Chan Seo; Wolfgang Bermel; Dominique P Frueh; Haribabu Arthanari
Journal:  Chem Commun (Camb)       Date:  2022-08-23       Impact factor: 6.065

2.  Connecting sequence features within the disordered C-terminal linker of Bacillus subtilis FtsZ to functions and bacterial cell division.

Authors:  Min Kyung Shinn; Megan C Cohan; Jessie L Bullock; Kiersten M Ruff; Petra A Levin; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-10       Impact factor: 12.779

3.  NMR spectroscopy, excited states and relevance to problems in cell biology - transient pre-nucleation tetramerization of huntingtin and insights into Huntington's disease.

Authors:  G Marius Clore
Journal:  J Cell Sci       Date:  2022-06-15       Impact factor: 5.235

4.  A Chemical Biology Primer for NMR Spectroscopists.

Authors:  Evan T Clark; Elanor E Sievers; Galia T Debelouchina
Journal:  J Magn Reson Open       Date:  2022-02-18

Review 5.  Dynamic protein structures in normal function and pathologic misfolding in systemic amyloidosis.

Authors:  Emily Lewkowicz; Olga Gursky
Journal:  Biophys Chem       Date:  2021-10-14       Impact factor: 3.628

6.  AlphaFold2: A Role for Disordered Protein/Region Prediction?

Authors:  Carter J Wilson; Wing-Yiu Choy; Mikko Karttunen
Journal:  Int J Mol Sci       Date:  2022-04-21       Impact factor: 6.208

Review 7.  Protein conformational dynamics and phenotypic switching.

Authors:  Prakash Kulkarni; Srisairam Achuthan; Supriyo Bhattacharya; Mohit Kumar Jolly; Sourabh Kotnala; Vitor B P Leite; Atish Mohanty; John Orban; Susmita Roy; Govindan Rangarajan; Ravi Salgia
Journal:  Biophys Rev       Date:  2021-11-27

Review 8.  Generating Ensembles of Dynamic Misfolding Proteins.

Authors:  Theodoros K Karamanos; Arnout P Kalverda; Sheena E Radford
Journal:  Front Neurosci       Date:  2022-03-31       Impact factor: 4.677

9.  Atomic resolution dynamics of cohesive interactions in phase-separated Nup98 FG domains.

Authors:  Eszter E Najbauer; Sheung Chun Ng; Christian Griesinger; Dirk Görlich; Loren B Andreas
Journal:  Nat Commun       Date:  2022-03-21       Impact factor: 17.694

10.  CSA Antisense Targeting Enhances Anticancer Drug Sensitivity in Breast Cancer Cells, including the Triple-Negative Subtype.

Authors:  Silvia Filippi; Elena Paccosi; Alessio Balzerano; Margherita Ferretti; Giulia Poli; Juri Taborri; Stefano Brancorsini; Luca Proietti-De-Santis
Journal:  Cancers (Basel)       Date:  2022-03-26       Impact factor: 6.639

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