| Literature DB >> 35887475 |
Xian-Dong Yu1, Sheng-Nan Zhang1, Jian-Kui Liu1.
Abstract
Pleosporales is the largest and most morphologically diverse order in Dothideomycetes, including a large proportion of saprobic fungi. During the investigation of microfungi from decaying wood in Sichuan Province, several novel fungal taxa of asexual and sexual morphs were collected, identified, and well-described. Phylogenetic analyses based on SSU, ITS, LSU, RPB2 and TEF1α gene sequences suggested that these new taxa were related to Pleosporales and distributed in five families, viz. Amorosiaceae, Bambusicolaceae, Lophiostomataceae, Occultibambusaceae and Tetraplosphaeriaceae. The morphological comparison and molecular phylogeny evidence justify the establishment of six new taxa, namely Bambusicola guttulata sp. nov., Flabellascoma sichuanense sp. nov., Neoangustimassarina sichuanensis gen. et sp. nov., Occultibambusa sichuanensis sp. nov. and Pseudotetraploa bambusicola sp. nov. Among them, Neoangustimassarina was introduced as the second sexual morph genus in Amorosiaceae; Bambusicola guttulata, O. sichuanensis and P. bambusicola were isolated from bamboos, which contributed to the diversity of bambusicolous fungi. The detailed, illustrated descriptions and notes for each new taxon are provided, as well as a brief note for each family. The potential richness of fungal diversity in Sichuan Province is also discussed.Entities:
Keywords: 6 new taxa; Dothideomycetes; multi-gene; phylogeny; taxonomy
Year: 2022 PMID: 35887475 PMCID: PMC9317281 DOI: 10.3390/jof8070720
Source DB: PubMed Journal: J Fungi (Basel) ISSN: 2309-608X
PCR thermal cycles for SSU, ITS, LSU, RPB2 and TEF1α amplification.
| Step | SSU | ITS, LSU, |
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|---|---|---|---|---|---|---|---|---|---|
| Temperature | Time | Cycles | Temperature | Time | Cycles | Temperature | Time | Cycles | |
| Initial Denaturation | 98 °C | 2 min | 1 | 98 °C | 2 min | 1 | 98 °C | 2 min | 1 |
| Denaturation | 98 °C | 10 s | 35 | 98 °C | 10 s | 35 | 98 °C | 10 s | 35 |
| Annealing | 47 °C | 10 s | 56 °C | 10 s | 61.7 °C | 10 s | |||
| Extension | 72 °C | 10 s | 72 °C | 10 s | 72 °C | 10 s | |||
| Final Extension | 72 °C | 5 min | 1 | 72 °C | 5 min | 1 | 72 °C | 5 min | 1 |
| Hold | 4 °C | - | - | 4 °C | - | - | 4 °C | - | - |
Taxa used in the phylogenetic analyses and their GenBank accession numbers. Newly generated sequences are indicated with * and the ex-type strains are in bold.
| Species | Voucher/Strain/Isolate | GenBank Accession Number | ||||
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| REF113 | MK589345 | JN859333 | MK589353 | N/A | MK599319 |
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| REF117 | MK589347 | JN859337 | MK589355 | N/A | MK599321 |
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| NTUCC 18-097-2 | MT071231 | MT112304 | MT071280 | MT459141 | MT743272 |
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| NTUCC 18-097-3 | MT071232 | MT112305 | MT071281 | MT459142 | MT743273 |
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| UESTCC 22.0002 | ON332920 | ON332910 | ON332928 | ON383986 | ON381178 | |
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| MFLU 19-0500 | MT554923 | MT554925 | MT554926 | MT590776 |
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| CBS 143641 | LC312470 | LC312499 | LC312528 | LC312586 | LC312557 |
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| CBS 160.30 | N/A | JQ044428 | JQ044447 | N/A | N/A |
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| CBS 143645 | LC312474 | LC312503 | LC312532 | LC312590 | LC312561 |
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| UESTCC 22.0003 | ON332922 | ON332912 | ON332930 | ON383988 | ON381180 | |
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| NFCCI-4250 | MG844280 | MG844284 | MG844276 | MG968956 | N/A |
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| KT 3056 | LC312484 | LC312513 | LC312542 | LC312600 | LC312571 |
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| KUMCC 20-0216 | MW264227 | MW264218 | MW264197 | MW256810 | MW256819 |
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| KT 709/HHUF 27293 | AB521732 | AB433276 | AB433274 | JN993493 | LC001753 |
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| CBS 154.93 | FJ795491 | N/A | FJ795448 | FJ795465 | N/A |
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| UESTCC 22.0001 | ON332918 | ON332908 | ON332926 | ON383984 | ON381176 | |
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| KH 161 | AB618689 | LC001731 | AB619008 | N/A | LC001749 |
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| KT 634 | AB618690 | LC001732 | AB619009 | N/A | LC001750 |
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| UESTCC 22.0004 | N/A | ON332914 | ON332932 | ON383990 | ON381182 | |
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| JCM 12854 | AB524470 | AB524795 | AB524611 |
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| UESTCC 22.0005 | ON332924 | ON332916 | ON332934 | ON383992 | ON381184 | |
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| MFLUCC 17-2362 | N/A | MT627681 | MN913685 |
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| CBS 996.70 | AB524486 | AB524805 | AB524627 |
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| MFLUCC 11-0083 | KJ591575 | KJ591577 | KJ591576 | N/A | N/A |
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| UESTCC 21.0016 = NMX1222 | OL741381 | OL741378 | OL741318 | N/A | N/A |
Figure 1RAxML tree generated from combined SSU, ITS, LSU, RPB2 and TEF1α sequence data of targeted five families (Amorosiaceae, Bambusicolaceae, Lophiostomataceae, Occultibambusaceae, and Tetraplosphaeriaceae) in Pleosporales. Bootstrap values for ML equal to or greater than 75% are placed above the branches. Branches with Bayesian posterior probabilities (PP) from MCMC analysis equal to or greater than 0.95 are in bold. The tree was rooted with Hysterium rhizophorae (NFCCI 4250). The ex-type strains are indicated in bold and newly generated sequences are indicated in red.
Figure 2(HKAS 123092, holotype) (a–c) Ascomata on host substrate. (d–f) Vertical section of ascoma. (g–k) Asci. (l,m) Structure of peridium. (n) Pseudoparaphyses. (o–s) Ascospores. (t) Germinated ascospore. (u,v) Colonies on PDA, above (u) and below (v). Scale bars: (d–f) = 100 μm, (g–t) = 20 μm.
Figure 3(HKAS 123091, holotype) (a–c) Conidiomata on surface of dead bamboo culms. (d,e) Vertical section of conidioma. (f) Wall of conidioma. (g–j) Conidiogenous cells bearing conidia (the arrows indicated how the conidiogenous cells produce conidia). (k–o) Conidia. (p) Germinating conidia. (q,r) Colonies on PDA, above and below. Scale bars: (d,e) = 50 μm, (f,g,p) = 20 μm, (h–o) = 10 μm.
Figure 4(HKAS 123094, holotype) (a–c) Ascomata on host substrate. (d) Vertical section of ascoma. (e) Ostiole, showing periphyses. (f) Structure of peridium. (g) Pseudoparaphyses. (h–k) Asci. (l–o) Ascospores. (p) Germinated ascospore. (q,r) Colonies on PDA, above and below. Scale bars: (d,e) = 50 μm, (f,p) = 20 μm, (g–o) = 10 μm.
Morphological comparative data of Flabellascoma species.
| Taxa | Ascomata (μm) | Hamathecium (μm) | Asci (μm) | Ascospores (μm) | Sheath (μm) | References |
|---|---|---|---|---|---|---|
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| 280–440 × 260–390 | 1.2–2.0 | 48.0–72.0 × 8–9 | 16–18 × 4.3–5.3 | 4.7–7.0 μm wide | [ |
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| 490–530 × 600–620 | 1.0–3.0 | 67.5–88.0 × 9–12 | 17–23 × 4.5–7.0 | 7.0–10 μm long | [ |
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| 310–420 × 320–380 | 1.5–3.0 | 66.0–80.0 × 10–12 | 15–18 × 4.0–5.0 | 5.4–8.0 μm wide | [ |
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| 250–320 × 350–500 | 1.5–3.0 | 45.0–77.5 × 7.5–12 | 12–17.5 × 3.5–5 | 5.5–8.0 μm long | [ |
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Figure 5(HKAS 123093, holotype) (a–c) Ascomata on host substrate. (d,e) Vertical section of ascoma. (f–j) Asci. (k) Structure of peridium. (l) Pseudoparaphyses. (s) Ascospores. (t) Germinated ascospore. Colonies on PDA, above and below. Scale bars: (d,e) = 50 μm, (f–k,m–t) = 20 μm, (l) = 10 μm.
Morphological comparative data of Occultibambusa.
| Taxa | Ascomata (μm) | Asci | Ascospores | References | ||
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| Morphology | Size (μm) | Morphology | Size (μm) | |||
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| Clavate | 73–86 × 9–13 | Narrowly fusiform, 1-septate, brownish, with a sheath | 19–25 × 3.5–6.5 | [ |
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| 150–200 × 400–550 | Broadly cylindrical | (50–)60–80(−90) × (9.5–)11.5–14.5(−15) | Slightly broad and fusiform, 1-septate, dark brown, with a sheath | (22–)23.5–27.5× 4.5–7 | [ |
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| 195–295 × 352–520 | Clavate-oblong | 47–92 × 12–16 | Fusiform, (1–)3-septate, hyaline when immature, pale brown to red-brown at maturity, without a sheath | 16–24 × 5–7 | [ |
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| 135–185 × 240–275 | Clavate to cylindric-clavate | (60–)65–90(−110) × (11–)12–14(−15)(−16) | Fusiform, mostly 1-septate, rarely 2–3-septate, light brown, without a sheath | (20–)22–25(−26) × 5–6(−6.5) | [ |
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| 180–340 × 400–550 | Cylindric-clavate to clavate | (78–)80–130(–137) × (18–)19–23(–25) | Fusiform, 1-septate, hyaline when young and becoming pale brown when mature, with a sheath | (25–)27–30 × (5.5–)8–9(–10) | [ |
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| 196–236 × 200–260 | Broadly cylindrical to clavate | (65–)75–89(–105) × 13.5–19 | Inequilateral-fusiform, 2-celled, hyaline when young and becoming brown to grayish when mature, without a sheath | 27–33.5 × 5.5–6.5 | [ |
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| 110–150 × 220–260 | Clavate or cylindric-clavate | 110–140(–160) × 13–16.5 | Fusiform, 1-septate, brown, without a sheath | 32–40 × 5–6.5 | [ |
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| 544–600 diameter | Broadly cylindrical to clavate | (66–)77–85(–94) × 17–20(–24) | Inequality-fusiform, 2-celled, hyaline when young and become light brown when mature, without a sheath | 25–31 × 8–10 | [ |
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| 150–200 × 200–300 | Cylindrical | 80–105 × 8–12 | Slightly broad-fusiform, 1-septate, hyaline to pale brown, with a sheath | 22–25 × 5–5.5 | [ |
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Figure 6(HKAS 123095, holotype) (a–c) Colonies on natural substratum. (d–l) Conidia. (m) Germinating conidium. (n) Colony on PDA from above and below. Scale bars: (d–m) = 20 μm.