| Literature DB >> 35878028 |
Michael Benedict Davies1,2, Martin Fitzner3, Angelos Michaelides1,2.
Abstract
Crystal nucleation is one of the most fundamental processes in the physical sciences and almost always occurs heterogeneously with the aid of a nucleating substrate. No example of nucleation is more ubiquitous and impactful than the formation of ice, vital to fields as diverse as geology, biology, aeronautics, and climate science. However, despite considerable effort, we still cannot predict a priori the efficacy of a nucleating agent. Here we utilize deep learning methods to accurately predict nucleation ability from images of room temperature liquid water-generated from molecular dynamics simulations-on a broad range of substrates. The resulting model, named IcePic, can rapidly and accurately infer nucleation ability, eliminating the requirement for either notoriously expensive simulations or direct experimental measurement. In an online poll, IcePic was found to significantly outperform humans in predicting the ice nucleating efficacy of materials. By analyzing the typical errors made by humans, as well as the application of reverse interpretation methods, physical insights into the role the water contact layer plays in ice nucleation have been obtained. Moving forward, we suggest that IcePic can be used as an easy, cheap, and rapid way to discern the nucleation ability of substrates, also with potential for learning other properties related to interfacial water.Entities:
Keywords: deep learning; ice; nucleation
Year: 2022 PMID: 35878028 PMCID: PMC9351478 DOI: 10.1073/pnas.2205347119
Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN: 0027-8424 Impact factor: 12.779
Fig. 1.Building an image recognition model to accurately and rapidly predict the ice nucleation behavior of substrates. (A) Illustration of the substrate database, with an example of how ice formation is measured directly and predicted via the water contact layer and how the subsequent error in the prediction is determined. (B) Performance of IcePic and dummy models in predicting T: the best achievable error—set by the natural deviation in T for individual systems—and RMSE are given. An attempt by humans at this task is also reported.
Fig. 2.Performance of IcePic across different test datasets containing unseen structures; in each case the training dataset consists of all other systems in the database. (Left) Plot of IcePic’s (bars) and the dummy model’s (circles) RMSE values, along with the best achievable error (gray region) and the error achieved in random stratified sampling as reported in Fig. 1 (yellow dashed line). (Right) Images of a representative system from each test dataset over which the model’s performance was assessed: OH groups (red) with different tiling patterns, cuts of LJ FCC crystals (atoms colored by height), and a variety of graphene and graphene oxide like systems (carbon in gray, OH in red).
Fig. 3.Identification of water contact layer patterns that can transition from being active (Top) to inactive (Bottom) to ice nucleation by changing their length scale. Area density images (blue color bar; Top) show water contact layers passed to IcePic—in each case a unit cell has been identified (square, rectangle, rhombus, or hexagon). SHAP density images (blue-white-red color bar; Bottom) show the same images of water contact layers but with the pixels colored by their effect on IcePic’s output: T.
Fig. 4.Archetypal errors made by humans when predicting nucleation temperatures. Mean values predicted for each image by quiz respondents are shown as T.