Literature DB >> 3580643

Locally optimal subalignments using nonlinear similarity functions.

S F Altschul, B W Erickson.   

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Year:  1986        PMID： 3580643     DOI： 10.1007/bf02462328

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN： 0092-8240            Impact factor:   1.758


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  10 in total

1.  Optimal sequence alignments.

Authors:  W M Fitch; T F Smith
Journal:  Proc Natl Acad Sci U S A       Date:  1983-03       Impact factor: 11.205

2.  Optimal sequence alignment using affine gap costs.

Authors:  S F Altschul; B W Erickson
Journal:  Bull Math Biol       Date:  1986       Impact factor: 1.758

3.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

4.  A nonlinear measure of subalignment similarity and its significance levels.

Authors:  S F Altschul; B W Erickson
Journal:  Bull Math Biol       Date:  1986       Impact factor: 1.758

5.  A fast homology program for aligning biological sequences.

Authors:  P Taylor
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

6.  On the statistical assessment of similarities in DNA sequences.

Authors:  J G Reich; H Drabsch; A Däumler
Journal:  Nucleic Acids Res       Date:  1984-07-11       Impact factor: 16.971

7.  Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries.

Authors:  W B Goad; M I Kanehisa
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

8.  An improved algorithm for matching biological sequences.

Authors:  O Gotoh
Journal:  J Mol Biol       Date:  1982-12-15       Impact factor: 5.469

9.  Efficient sequence alignment algorithms.

Authors:  M S Waterman
Journal:  J Theor Biol       Date:  1984-06-07       Impact factor: 2.691

10.  Internal duplication in human alpha 1 and beta 1 interferons.

Authors:  B W Erickson; L T May; P B Sehgal
Journal:  Proc Natl Acad Sci U S A       Date:  1984-11       Impact factor: 11.205
  10 in total
  7 in total

1.  The estimation of statistical parameters for local alignment score distributions.

Authors:  S F Altschul; R Bundschuh; R Olsen; T Hwa
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

2.  Uncertainty in homology inferences: assessing and improving genomic sequence alignment.

Authors:  Gerton Lunter; Andrea Rocco; Naila Mimouni; Andreas Heger; Alexandre Caldeira; Jotun Hein
Journal:  Genome Res       Date:  2007-12-11       Impact factor: 9.043

Review 3.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

4.  Optimized homology searches of the gene and protein sequence data banks.

Authors:  C B Lawrence; D A Goldman; R T Hood
Journal:  Bull Math Biol       Date:  1986       Impact factor: 1.758

5.  Significance levels for biological sequence comparison using non-linear similarity functions.

Authors:  S F Altschul; B W Erickson
Journal:  Bull Math Biol       Date:  1988       Impact factor: 1.758

6.  A nonlinear measure of subalignment similarity and its significance levels.

Authors:  S F Altschul; B W Erickson
Journal:  Bull Math Biol       Date:  1986       Impact factor: 1.758

7.  Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail.

Authors:  Stefan Wolfsheimer; Bernd Burghardt; Alexander K Hartmann
Journal:  Algorithms Mol Biol       Date:  2007-07-11       Impact factor: 1.405
  7 in total

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