Katherine Chaves-Carballo1, Guy V Lamoureux1, Alice L Perez1, Alexandre Bella Cruz2, Valdir Cechinel Filho2. 1. Centro de Investigaciones en Productos Naturales and Escuela de Química, Universidad de Costa Rica San Pedro 2060 San José Costa Rica alice.perez@ucr.ac.cr. 2. Núcleo de Investigações Químico-Farmacêuticas (NIQFAR), CCS, Universidade do Vale do Itajaí (UNIVALI) Itajaí SC Brazil.
The treatment of bacterial infections by commercial antibiotics in the past two decades has been threatened by the increasing incidence of multi-drug resistant pathogens. The same can be said of fungal infections by antifungal agents. The misuse and overuse of antibiotics have contributed significantly to this health issue, compromising the public health systems in many countries.[1-3]Among the most pernicious resistant microbes are Candida albicans, Staphylococcus aureus and Escherichia coli, which are three of the main microorganisms responsible for nosocomial infections by formation of biofilms on medical devices.[4,5]E. coli and S. aureus are part of the ESKAPE group, an acronym for difficult to treat bacteria that stands for Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa and Enterobacter species.[6-9]As part of the search for new effective antibiotics and antimicrobials, natural products have played a significant role as structure–activity templates. One family of bioactive natural products, naphthoquinones, are a group of chromatic pigments found inside the vacuoles and as secondary metabolites in some families of plants (Verbenaceae, Bignoniaceae, Lythraceae), bacteria (Streptomyces) and fungi (Fusarium). These compounds provide protection against microorganisms, acting as pro-oxidants by the production of reactive oxygen species (ROS) through radical chain reactions, and as potential electrophiles when they react with nucleophilic centers in biological molecules to form covalent bonds.[10-12] Examples of common naphthoquinones (Fig. 1) include lapachol 1, extracted as a yellow solid from the tree bark of the Tabebuia species,[13,14] and lawsone 2, obtained from the leaves of Lawsonia inermis (henna) and some trees of the Lythraceae family.[15,16]
Fig. 1
Lapachol 1 and lawsone 2, naturally occurring naphthoquinones.
Both lapachol and lawsone exhibit antimalarial, anti-cancer, antitrypanosomal, antifungal and antibacterial properties that have been used as natural remedies in indigenous communities,[16,17] and both structures can be modified for the development of new drugs that will potentially present selective and efficient mechanisms against malaria, cancer, bacteria and fungi.[8,18-23] Fieser and co-workers, in work that extended over a quarter century, determined the physical and chemical properties of lapachol and lawsone and some synthetic derivatives, in order to evaluate their activity against Plasmodium species.[24-31] Based on Fieser's seminal work, a series of metal complexes[18,32,33] and C2 and/or C3 naphthoquinone substituted derivatives, such as alkyl,[34,35] nitrogen,[36-43] sulfur,[39,41,44-48] and oxygen-containing[21,22,42,49-51] molecules have been proposed as potential antitumoral, antibacterial, antiparasitical, antiviral and antifungal agents.Among the oxygen-containing compounds are aryloxynaphthoquinones, which include a phenolic or naphtholic moiety. Phenols are important secondary metabolites in plants, because they act as pigments, antioxidants and antimicrobial agents against molds, fungi and bacteria through the modification of the permeability of the cell membrane, modification of the cell wall rigidity or induced changes in intracellular functions.[52-54] Based on the suspected activity of phenolic derivatives, Bolognesi and co-workers have reported the synthesis of a small library of quinone-phenol hybrid compounds, starting with 2-bromo-1,4-naphthoquinone and 2-bromo-1,4-anthraquinone, using dimethylformamide (DMF) as solvent at room temperature and K2CO3 as base. The synthesized compounds were tested to determinate their antiparasitic action against Trypanosoma cruzi, T. brucei rhodesiense and Leishmania donovani. Some of these 1,4-naphthoquinone phenolic ethers showed interesting activity.[49] Also, the antitumoral action of these compounds was tested against human dermal fibroblasts, IGROV-1 (ovarian) and HT-29 (colon) adenocarcinoma cells; significant cytotoxic activity was displayed by certain quinone–phenol hybrids. The active compounds had an inhibitory effect on glycolysis and mitochondrial respiration.[22]Vázquez and co-workers have also synthesized some 2-aryloxynaphthoquinones under basic conditions (K2CO3 as base and DMF at room temperature), as well as 7-aryloxyquinolinquinones and 6-aryloxyfuranaphthoquinones, to evaluate their antitrypanosoidal action against the epimastigote form of T. cruzi, using nifurtimox as reference compound. Most of the prepared compounds were more active than the reference drug, and those that were more potent, were also more selective in comparison with J-774 cells.[42] In a second study by the same authors, a new set of aryloxyquinones, synthesized under the same reaction conditions, was tested against the epimastigote form of T. cruzi in the presence of nifurtimox as reference drug. They discovered that the majority of the synthesized products showed higher potency than the control compound, but only two of them showed high selectivity towards nonneoplastic monkey kidney cells (Vero).[50]Detailed in this article is our contribution to naphthoquinone research; a library of thirty phenoxy-1,4-naphthoquinone derivatives was prepared via a novel one-pot synthesis from 2-bromo-1,4-naphthoquinone (2-BrNQ) combined with the corresponding phenols in the presence of a base (CsOH, Cs2CO3 or KF/Al2O3) and toluene as solvent, which proceeded through an nucleophilic substitution reaction. The main objective of the study was to evaluate the antimicrobial action of this group of compounds against C. albicans, E. coli and S. aureus, in order to determine a posible correlation between these results and basic structural properties of aryloxy-1,4-naphthoquinones: molar mass and the substitution pattern at the phenolic moiety. Furthermore, an in silico evaluation of the absorption, distribution, metabolism and excretion (ADME) of the most active compounds was applied, based on the Lipinski's rule of five to establish the druglikeness of the prepared compounds.
Results and discussion
Chemistry
Thirty derivatives of 2-phenoxy-1,4-naphthoquinones (Fig. 2) were synthesized via a one-pot nucleophilic substitution reaction between 2-bromo-1,4-naphthoquinone (2-BrNQ) 3 and the corresponding phenolate, which was previously deprotonated by bases such as Cs2CO364, CsOH 65 or KF/Al2O366 (Table 1). The synthesis was performed using toluene as solvent, and under a positive nitrogen atmosphere or in the presence of a cellulose thimble with CaH2 to reduce the incidence of moisture, allowing the reaction to go to completion. In general, the compounds of interest were obtained with low-to-excellent yields (Table 1).
Fig. 2
Synthesized phenolic ether derivatives of 1,4-naphthoquinones.
Reaction conditions, yield, and purity of the synthesized compoundsa
Compound
Base
Time (h)
Yield (%)
Purity (%)
Compound
Base
Time (h)
Yield (%)
Purity (%)
34
64
2
68
99.9
49
64
4
77
98.6
35
64
2
52
95.9
50
64
4
30
N.D.
36
64
2
96
99.3
51
64
4
26
98.7
37
64
2
58
99.0
52
64
4
44
99.3
38
64
2
87
99.7
53
64
4
53
98.0
39
64
3
75
99.7
54
64
4
58
96.2
40
64
3
62
98.9
55
64
4
40
99.1
41
64
3
65
97.3
56
64
4
11
97.1
42
64
3
50
98.7
57
64
5
56
95.1
43
64
3
82
96.0
58
64
5
92
99.1
44
64
3
16
99.4
59
65
3
27
96.6
45
64
3
56
98.8
60
65
3
69
98.7
46
64
3
58
97.9
61
65
3
59
97.9
47
64
3
48
97.9
62
66
4
24
97.1
48
64
3
76
99.6
63
66
3
56
98.3
N.D. = not determined.
N.D. = not determined.In all cases, a single compound was obtained: the product of the nucleophilic substitution at the ipso position, which was confirmed by X-ray crystal diffraction analysis (to be published) and by the presence of a signal around 6.0 ppm (singlet) in the 1H NMR spectrum of the crude reaction mixture, assigned to the hydrogen atom bonded to C3. This regioselectivity is a consequence of the transmission of the electronic effects of the carbonyl groups of the naphthoquinone moiety through the C2–C3 double bond, so that the 2-bromo-1,4-naphthoquinone can be regarded as a vinylogous acyl bromide.[55] The C2 position has a better nucleofuge (–Br), which makes it a more reactive position towards a nucleophilic substitution reaction.In terms of the kinetic reactivity and the thermodynamic stability of the phenolates, these factors are a result of the nature (electron donating or electron withdrawing) and the location of the substituents in the phenolic moiety.[56,57] The nucleophilicity of the phenols is strongly influenced by their acidity, shape and polarizability, so the reaction conditions were chosen to enhance those properties and to maximize the recuperation of the product from the crude reaction mixture. For instance, the selection of the base depended on the pKa of the phenols, which is affected by the presence of electron-withdrawing (EW) or electron-donating (ED) groups (either by inductive or mesomeric effects); the former groups provide a more thermodynamically stable and less kinetically reactive phenolate than the latter. In this research, phenols containing one or more strongly electron-withdrawing (–NO2), weakly electron-withdrawing (–Cl, –Br), weakly electron-donating (alkyl and aromatic groups) and strongly electron-donating (–OCH3) groups were used, as well as sterically small and bulky substituents, so the resultant interval of reaction yields and reaction times depended on the nucleophilicity of each phenolate.[58,59]The selection of toluene as the reaction solvent was based on the selective solubility of the aryloxy-1,4-naphthoquinone, 2-BrNQ and the phenol, but not the inorganic salts and the base residue. These solubility differences facilitated the work-up process, in terms of time and steps needed, given that the separation of the compound of interest from the reaction crude only involved a hot filtration step. Initially, aprotic solvents such as DMF and dimethylsulfoxide (DMSO) were considered, as previously reported in the literature,[22,42,49,50] due to the greater solubility of the bases in comparison with non-polar solvents. However, the resulting crude reaction mixtures in DMF consisted of viscous syrups, which were not easy to concentrate or separate by filtration. The isolation of the product from these mixtures involved a series of unit operations (washing, extraction, filtration) that significantly lowered the yield.The deprotonation of the phenol was the first step of the reaction. To promote this process, the phenol and the appropriate base were stirred under reflux in the reactor and left for 30 min under a dry nitrogen atmosphere or in the presence of a cellulose thimble with CaH2 (to remove trace water given the high atmospheric humidity levels under which the reactions were performed). As to the selection of the base, in the cases where intermediate or strongly electron-donating groups were present, CsOH or Cs2CO3 were chosen as bases. The preference of Cs2CO3 over CsOH rests on two criteria: (1) the former's lower hygroscopic character; even a trace of water produced subproducts due to attack on C2 in the naphthoquinone moiety to form lawsone, and (2) because carbonate is a weaker base with negligible nucleophilic character, compared to hydroxide ion.[60-62] On the other hand, Al2O3/KF was reserved to the most acidic phenols. Although the pKa of HF is low (pKa = 3.14), it is suspected that KOH is produced in the early stages of deposition of KF over alumina, hence augmenting the basicity of the resulting material without the concomitant production of free hydroxide ion.[63] K3PO4 and K2CO3 were also tested as bases, but due to the poor yields obtained and their low solubility in toluene, their use was discarded. In terms of solubility, cesium salts were preferred over other alkaline bases, given that the polarizability of the cesium ion increases their solubility in non-polar solvents.[64]
Biological activity of the naphthoquinone phenolic ethers
The results of the measured biological activity of the synthesized compounds (in MIC, μmol L−1) are shown in Table 2. From all the synthesized phenolic ethers, the triclosan derivative 55 was the most effective against S. aureus and E. coli (the MICs were comparable to the control compound, gentamicin sulphate, in a 1.7 and 0.97-fold, respectively), but not for C. albicans, so 55 shows significant antibacterial activity, but little antifungal activity against C. albicans. These results agree with the known bactericidal action of triclosan, attributed to the inhibition of the enoyl-acyl reductase protein transporting enzyme, which blocks lipid synthesis.[65,66]
Antimicrobial activity of the 2-aryloxy-1,4-naphthoquinone derivativs, expressed as minimal inhibitory concentration (μmol L−1)
Compound
Molar mass (g mol−1)
MIC (μmol L−1)
S. aureus
E. coli
C. albicans
34
280.275
3568
892
3568
35
280.275
223
3568
446
36
280.275
1784
3568
3568
37
295.246
21.2
3387
3387
38
329.145
760
3038
190
39
329.145
3038
3038
3038
40
408.041
2450
2450
2450
41
486.937
2054
2054
2054
42
319.139
3133
3133
3133
43
492.563
2030
2030
2030
44
326.345
3064
3064
3064
45
306.355
3264
3264
3264
46
284.694
220
3512
220
47
284.694
878
3512
220
48
284.694
439
3512
439
49
250.249
250
250
4000
50
295.246
13
1693
85
51
353.584
2828
2828
2828
52
353.584
2828
2828
2828
53
312.747
3197
3197
3197
54
306.355
3262
3262
3262
55
445.679
0.34
0.56
2244
56
320.339
1561
3122
3122
57
540.562
925
1850
1850
58
580.626
431
1722
1722
60
264.276
473
3784
237
61
264.276
237
3784
473
62
295.246
212
3387
3387
63
319.139
49
3133
3133
Gentamicin sulphate
1488.8
0.52
0.52
—
Ketoconazole
541.43
—
—
0.56
In general, except for the triclosan derivative (55), the synthesized compounds exhibit a mild-to-low action towards the selected microorganisms, although the antibacterial effect is more significant than the antifungal, given the high MIC values against C. albicans. S. aureus, a Gram-positive bacteria, proved to be slightly more sensitive to the synthetized compounds than E. coli (a Gram-negative bacteria), accordingly to what is reported in the literature for some naphthoquinone derivatives.[41,67] As to the phenolic moiety, the results agree with the reported sensitivity, which is slightly greater towards S. aureus. In terms of the reported phenolic antibacterial action, the sensitivity of these microorganisms towards the synthesized compounds agrees with what is reported for some phenols and polyphenols.[52,68-70]A plot of the MIC versus the molar mass of each compound shows an interesting trend, in which the increase of lipophilic character, due to the greater non-polar section, seems to be the main factor (Fig. 3). Some exceptions are observed (mostly for S. aureus), which can be attributed to a greater impact of electronic effects, caused by the position of the substituent in the phenolic moiety and its electron-donor or electron-withdrawing nature.
Fig. 3
Observed correlation between MIC and molar mass of the synthesized compounds for (a) S. aureus, (b) E. coli and (c) C. albicans.
To assess the effect of the substituent group in the phenolic moiety, in comparison to the unsubstituted compound (49), a ratio between the MIC of 49 and the corresponding MIC for each compound, was calculated (Table 3). In general, the presence of substituents seems to affect in a greater extent the action against C. albicans, given that all the substituted 2-aryloxynaphthoquinones display a greater MIC ratio, while for E. coli, only 55 significantly increases this ratio. For S. aureus, electron-withdrawing groups like –Cl and –NO2 demonstrate a greater ratio than electron-donating groups like –OCH3 or –CH3.
Assessment of the effect of substituents in the phenolic moiety on the relative antimicrobial action of the synthesized compounds
Compound
Molar mass (g mol−1)
MIC49/MICcompound
S. aureus
E. coli
C. albicans
34
280.275
0.07
0.28
1.12
35
280.275
1.12
0.07
8.97
36
280.275
0.14
0.07
1.12
37
295.246
11.79
0.07
1.18
38
329.145
0.33
0.08
21.05
39
329.145
0.08
0.08
1.32
40
408.041
0.10
0.10
1.63
41
486.937
0.12
0.12
1.95
42
319.139
0.08
0.08
1.28
43
492.563
0.12
0.12
1.97
44
326.345
0.08
0.08
1.31
45
306.355
0.08
0.08
1.23
46
284.694
1.14
0.07
18.18
47
284.694
0.28
0.07
18.18
48
284.694
0.57
0.07
9.11
49
250.249
1.00
1.00
1.00
50
295.246
19.23
0.15
47.06
51
353.584
0.09
0.09
1.41
52
353.584
0.09
0.09
1.41
53
312.747
0.08
0.08
1.25
54
306.355
0.08
0.08
1.23
55
445.679
735.29
446.43
1.78
56
320.339
0.16
0.08
1.28
57
540.562
0.27
0.14
2.16
58
580.626
0.58
0.15
2.32
60
264.276
1.05
0.07
8.46
61
264.276
0.53
0.07
16.88
62
295.246
1.18
0.07
1.18
63
319.139
5.10
0.08
1.28
In terms of the substituent's position in the phenolic moiety (o, m, or p), the three derivatives of –NO2 (37, 50, 62), –Cl (46, 47, 48) and –OCH3 (34, 35, 36) were considered (Table 4). For S. aureus, the presence of substituents in ortho and para positions exhibits a greater incidence in the activity as the electron-withdrawing effect increases, while for the meta position, the presence of weak EW groups like –Cl diminishes the activity, in comparison to –OCH3 and –NO2. As to the influence of the ortho and para positions on the activity, the former shows a greater effect than the latter. It is interesting to point out that the presence of two –Cl groups in ortho and para positions increases the activity in comparison to the monosubstituted compounds, as 63 is more effective towards S. aureus than 46 and 48.
Antimicrobial activity of some monosubstituted 2-aryloxynaphthoquinones at o, m and p positions against S. aureus, E. coli and C. albicans
Substituent group
MIC (μmol L−1)
S. aureus
E. coli
C. albicans
o
m
p
o
m
p
o
m
p
–NO2
13
21.2
212
1693
3387
3387
85
3387
3387
–Cl
220
878
439
3512
3512
3512
220
220
439
–OCH3
3568
223
1784
892
3568
3568
3568
446
3568
In the case of E. coli, the meta and para positions do not exert an important effect on the activity regardless of the substituent's nature, while for ortho, the presence of an ED group (–OCH3) lowers the MIC, in comparison to a strong EW as –NO2, or a weak EW group as –Cl. As to C. albicans, the presence of –NO2 exerts a more significant effect on the activity when it is located at the ortho position, while for –Cl, ortho and meta positions display the same effect, that is slightly greater than the para position. In the case of –OCH3, the location at the meta position produces an 8-fold increase in the activity when compared to the ortho or para positions.3D Cartesian plots were made using Plotly Chart Studio online (https://chart-studio.plotly.com/feed/#/) to visualized 3D structural parameters. One of the correlations made is shown in Fig. 4. The value of log P were calculated using SwissADME web tool.[71] As seen with the 2D correlations, there is no general tendency that can be drawn besides the fact that compound 55 seems singled out from the rest.
Fig. 4
3D Cartesian correlations for the library of compounds (Plotly Chart Studio online, https://chart-studio.plotly.com/feed/#/).
Evaluation in silico of the more active compounds (55, 37, 50 and 63) for their ADME (Absorption, Distribution, Metabolism and Excretion) properties using the SwissADME web tool[71] was performed. The results obtained indicated the drug-likeness of all these phenol ethers, according to the classic Lipinski rule of five. The radar plots (Fig. 5), provided by SwissADME show how the degree of insaturation (INSATU) for a series of aromatic compounds seems to be the most important factor for the drug-likeness of this series (see the ESI† for more details). With further analysis, 55 shows intermediate solubility and lipophilic properties compared to the other three compounds. This behavior may explain the lower drug-likeness of 55 even though it is the most active of the whole group of molecules that have been synthesized.
Fig. 5
Radar plots comparison for the most active compounds (SwissADME web tool[71]).
Conclusions
A series of 30 compounds with substituted aryloxy groups connected to the C2 position of 1,4-naphthoquinone were synthesized by an efficient procedure. All the compounds were characterized by spectroscopy and the purity was confirmed by HPLC. The activity of the compounds against selected microorganisms was slight to low, with the exception of the triclosan derivative 55, which has significant antibacterial action (as good as or better than the controls) against E. coli and S. aureus. This compound is being further investigated as a potent new antibacterial. In general, for all the compounds, the bactericidal activity is significantly greater against S. aureus than against E. coli. The fungicidal activity cannot be considered practical, although against C. albicans, compounds 38, 46, 47 and 60 were the best candidates. We feel that the antibiotic tendencies are worth pursuing with a wider range of compounds whereas the antifungal results show that this pharmacophore is not a viable target against fungi.In terms of quantitative structure–activity relationships (QSAR), there is no clear relationship between the activity and the structure of the compound in our library. We showed a general correlation between the activity and molar mass, which seems independent of type of substituent, but further QSAR need to be analyzed to clarify the correlation tendencies. It is interesting that moving away from ‘flatland’ and using more three-dimensional structures seems to benefit the activity; we are actively pursuing this lead.The calculated ADME tendencies were ambiguous. Future research will take only the best candidates and run mouse and/or human liver microsomal preparations to determine experimental results. An expanded library of these bioactive compounds will be tested also against other biological strains or pathological microorganisms in the future, including an investigation of the mode of action of these types of compounds.
Experimental
All reagents (except eugenol, bisphenol A and bisphenol Z) were purchased from commercial suppliers [(Sigma-Aldrich-Merck)] and used without further purifications. A Radleys® tube carrousel reaction station (Radleys, UK), was used for the synthesis of the phenolic ethers. Thin-layer chromatography (TLC) was performed using silica gel Kieselgel 60 F254 (Merck, Darmstadt, Germany) precoated on aluminum sheets, with fluorescent indicator. Visualization of TLC plates was carried out by means of UV light or I2 staining. NMR spectra were recorded on a Bruker Ascend spectrometer (1H NMR at 600 MHz, 13C NMR at 150 MHz) at 25 °C, using tetramethylsilane as internal standard for 1H NMR spectra and CDCl3 as solvent for 1H NMR (7.26 ppm) and 13C NMR (77.2 ppm). All chemical shifts were reported in ppm, and the coupling constants (J), in Hz. IR spectra were recorded on a PerkinElmer 1000 FT and Varian 640-IR, on KBr pellets and Nujol® mulls. High resolution mass spectrometry spectra were measured on a quadrupole accelerated time-of-flight mass spectrometer (Synapt Acquity UPLC/TOF-MS, Waters). A PerkinElmer Series 200 liquid chromatographer with an UV/Vis detector was used, with a reverse phase C18 Discovery® (Supelco Analytical) chromatography column, dimensions of 25 cm × 4.6 mm and a particle size of 5 μm. The solvents employed (MeCN and MeOH) for the determination of the compounds' purity were HPLC grade (LiChrosolv, Merck). The melting point was determined using a Fisher-Johns melting point apparatus. Bisphenol A and bisphenol Z were synthesized according to the procedure described by Rahimi and Farhangzadeh (2001),[72] and their characterization by 1H and 13C NMR agreed with the reported spectroscopic data. For the synthesis of 56, the corresponding mass of whole cloves (Syzygium aromaticum) was used to give approximately 1.25 mmol of eugenol, based on the reported average composition of essential oil.
General procedure I (for the preparation of 34–58)
(Scheme 1: base = Cs2CO3). 2-Bromo-1,4-naphthoquinone 3 (237 mg, 1.00 mmol) was added to a dry Radleys® tube and the solid was then dissolved in toluene (2 mL). A weighed amount of each phenol 4–28 (1.5 mmol) and Cs2CO3 (489 mg, 1.5 mmol) were added to a second dry Radleys® tube, and this mixture was dissolved in toluene (3 mL). Both tubes were placed in a Radleys® carrousel, where constant stirring and reflux were maintained for 30 minutes. After this period, the naphthoquinone solution was slowly added with a Pasteur pipette to the phenolate solution, and the stirring and reflux continued for 2 h (34–38), 3 h (39–47), 4 h (48–55) or 5 h (56, 57). The reaction was monitored by thin layer chromatography (TLC), using toluene as the mobile phase and silica gel (Kieselgel F254, Merck) as the stationary phase. When little or no naphthoquinone substrate was observed on the TLC, the purification step (2.1.4) was applied.
Scheme 1
Synthesis of a series of 2-phenoxy-1,4-naphthoquinones (34–63).
General procedure II (for the preparation of 59–61)
(Scheme 1: base = CsOH). 2-Bromo-1,4-naphthoquinone 3 (237 mg, 1.00 mmol) was added to a dry Radleys® tube and the solid was then dissolved in toluene (2 mL). Phenol 29–31 (1.5 mmol) and CsOH (195 mg, 1.20 mmol) were added to second dry Radleys® tube and the mixture was dissolved in toluene (3 mL). Both tubes were placed in a Radleys® carrousel, where constant stirring and reflux were maintained for 30 minutes. After this period, the naphthoquinone solution was slowly added with a Pasteur pipette to the phenolate solution, and the stirring and reflux continued for 3 h. The reaction was monitored by thin layer chromatography, using toluene as the mobile phase and silica gel (Kieselgel F254, Merck) as the stationary phase. When little or no naphthoquinone substrate was observed on the TLC, the purification step (2.1.4) was applied.
General procedure III (for the preparation of 62 and 63)
(Scheme 1: base = KF/Al2O3 40% m/m). 2-Bromo-1,4-naphthoquinone 3 (237 mg, 1.00 mmol) was added to a dry Radleys® tube and the solid was then dissolved in toluene (2 mL). Phenol 32 and 33 (1.5 mmol) and KF/Al2O3 40% (291 mg, 2.0 mmol) were added to second dry Radleys® tube and the mixture was dissolved in toluene (3 mL). Both tubes were placed on a Radleys® carrousel, where constant stirring and reflux were maintained for 30 minutes. After this period, the naphthoquinone solution was slowly added with a Pasteur pipette to the phenolate solution, and the stirring and reflux continued for 3 h (62) or 4 h (61). The reaction was monitored by thin layer chromatography, using toluene as mobile phase and silica gel (Kieselgel F254, Merck) as stationary phase. When little or no naphthoquinone substrate was observed on the TLC, the purification step (2.1.4) was applied.
Purification of the reaction mixtures
Hot extraction–filtration
After the reaction was deemed completed, 10 mL of hot methyl t-butyl ether (MTBE), isooctane, n-heptane, or dichloromethane (depending on the extraction) were added to the Radleys® reaction tube, and the mixture was then heated up to reflux. The hot solution (red to yellow in color) was filtered by gravity (Whatman #42 filter paper) and the filtrate is collected in a round bottom flask (RBF), while the inorganic salts (black to reddish solids) were retained in the tube or the filter paper. The extraction process was repeated until a clear filtrate was obtained (approx. 4 to 6 times). The filtrate was concentrated under vacuum with a rotary evaporator. The obtained solid product (red to yellow solid) was suspended in cold pentane to dissolve impurities of 2-BrNQ 3, and the suspension was vacuum filtered to obtain dry product.
Cold base wash
After the reaction was deemed completed, the crude reaction mixture was dissolved in MTBE or dichloromethane (15 mL) and the mixture was transferred to a Squibb separatory funnel. The solution was washed five times with 10 mL of cold NaOH 0.5 mol L−1 or a saturated cold solution of K2CO3 to deprotonate the unreacted phenol. Some phenolate solutions were red, blue, or purple. The combined organic phase was washed with three portions of distilled water to remove any excess of the basic solution, and the organic solution was dried over anhydrous sodium sulfate. The solvent was removed under vacuum with a rotary evaporator. The obtained solid product (red to yellow solid) was suspended in cold pentane to dissolve impurities of 2-BrNQ 3, and the suspension was vacuum filtered to obtain dry product.
Column chromatography
After the reaction was deemed completed, the crude reaction mixture was dissolved in dichloromethane and the solution was transferred to a silica gel (Kieselguhr, 230–400 mesh, Merck) chromatography column. The column was eluted with toluene, cyclohexane, MTBE, dichloromethane, or gradients of solvents, depending on the polarity of the compound and the amount of the phenol residue. The fractions were monitored by TLC and those that contained the product were combined and concentrated with a rotary evaporator. The obtained solid product (red to yellow solid) was suspended in cold pentane to dissolve impurities of 2-BrNQ 3, and the suspension was vacuum filtered to obtain dry product.
Recrystallization
The crude reaction mixture or the treated solid was dissolved in an appropriate hot solvent. The mixture was heated to boiling and then let to cool down to room temperature. Later, the mixture was cooled in a freezer at −20 °C and the suspension of crystals was then vacuum filtered. The obtained solid product (red to yellow solid) was suspended in cold pentane to dissolve impurities of 2-BrNQ 3, and the suspension was vacuum filtered to obtain dry product.
2-(2-Methoxyphenoxy)-1,4-naphthoquinone (34)
Obtained according to general procedure I 2.1.1 and purified by hot extraction–filtration with MTBE, cold base wash (MTBE as solvent and NaOH 0.5 mol L−1 as base) and recrystallized using isooctane. Yield 141 mg (68%), yellow crystals, mp = (151.0–153.0) °C. 1H NMR (600 MHz, CDCl3): δ (ppm) = 8.21 (1H, d, J = 9 Hz, ArH), 8.06 (1H, d, J = 9 Hz, ArH), 7.75 (2H, m, ArH), 7.28 (1H, t, J = 8 Hz, ArH), 7.13 (1H, d, J = 9 Hz, ArH), 7.03 (1H, t, J = 8 Hz, ArH), 7.00 (1H, d, J = 8 Hz, ArH), 5.85 (1H, s, ArH), 3.80 (3H, s, CH3). 13C NMR (150 MHz, CDCl3): δ (ppm) = 185.2, 179.7, 159.5, 150.7, 140.9, 134.2, 133.4, 132.1, 131.2, 127.7, 126.7, 126.1, 122.4, 121.4, 113.0, 112.7, 55.7. IR (KBr pellet) cm−1: 3068, 2958, 1683, 1652, 1611, 1499, 1261, 1205. UV-Vis (MeOH) nm: 201, 243 (max), 271, 331. TOF-MS: m/z [M + H]+ calc. for C17H13O4: 281.0814; found: 281.0819. Purity measured by HPLC: 99.9%.
2-(3-Methoxyphenoxy)-1,4-naphthoquinone (35)
Obtained according to general procedure I 2.1.1 and purified by hot extraction–filtration with MTBE, cold base wash (MTBE as solvent and NaOH 0.5 mol L−1 as base) and recrystallized using isooctane. Yield 109 mg (52%), orange crystals, mp = (84.0–87.0) °C. 1H NMR (600 MHz, CDCl3): δ (ppm) = 8.23 (1H, d, J = 7.5 Hz, ArH), 8.09 (1H, d, J = 7.5 Hz, ArH), 7.80 (2H, m, ArH), 7.38 (1H, t, J = 7.5 Hz, ArH), 6.88 (1H, d, J = 9 Hz, ArH), 6.76 (1H, d, J = 8 Hz, ArH), 6.71 (1H, s, ArH), 6.05 (1H, s, ArH), 3.84 (3H, s, CH3). 13C NMR (150 MHz, CDCl3): δ (ppm) = 185.0, 179.9, 161.2, 160.4, 153.6, 134.4, 133.5, 132.0, 131.1, 130.8, 126.8, 126.2, 113.5, 113.0, 112.3, 55.5. UV-Vis (MeOH) nm: 211, 244 (max), 270, 331. IR (KBr pellet) cm−1: 3053, 2960, 1678, 1653, 1611, 1584, 1264, 1204. TOF-MS: m/z [M + H]+ calc. for C17H13O4: 281.0814; found: 281.0812. Purity measured by HPLC: 95.9%.
2-(4-Methoxyphenoxy)-1,4-naphthoquinone (36)
Obtained according to general procedure I 2.1.1 and purified by hot extraction–filtration with MTBE, chromatography column (CH2Cl2 as eluent, isocratic flow) and recrystallized using isooctane. Yield 201 mg (96%), yellow crystals, mp = (133.0–134.0) °C. 1H NMR (600 MHz, CDCl3): δ (ppm) = 8.20 (1H, d, J = 8 Hz, ArH), 8.06 (1H, d, J = 8 Hz, ArH), 7.76 (2H, m, ArH), 7.05 (2H, d, J = 8 Hz, ArH), 6.96 (2H, d, J = 8 Hz, ArH), 5.95 (1H, s, ArH), 3.83 (3H, s, CH3). 13C NMR (150 MHz, CDCl3): δ (ppm) = 185.0, 179.9, 161.2, 160.4, 153.6, 132.0, 131.1, 126.8, 126.2, 121.1, 117.6, 113.0, 55.5. IR (KBr pellet) cm−1: 3073, 2923, 1680, 1650, 1619, 1503, 1259, 1219. UV-Vis (MeOH) nm: 204, 243 (max), 274, 333. TOF-MS: m/z [M + H]+ calc. for C17H13O4: 281.0814; found: 281.0817. Purity measured by HPLC: 99.3%.
Determination of the purity of the synthesized compounds by HPLC
Solutions (500–1000 μmol L−1) of each prepared compound, the corresponding phenol and 2-BrNQ 3 were separately prepared in 10.00 mL volumetric flasks by the direct method, weighting the required mass of compound on the analytical balance to 4 decimals. In some cases, to complete the dissolution of all the solids, the flask with solvent was placed in an ultrasonic bath and sonicated until the solid dissolved completely. The solutions were filtered through a nylon syringe filters 4.6 cm × 0.20 μm (Agilent), and the filtrate was collected in a vial. 10 μL of the solution were injected in the liquid chromatograph. The elution was perform using an isocratic flow of 1 mL min−1 and total elution time of 25 minutes. The wavelengths used were 269 nm (36–45, 48, 49, 52, 53, 55–58, 62, 63), 274 nm (34, 51, 60) and 286 nm (35, 46, 47, 54, 59, 61). MeCN (100%) was used as eluent at 269 nm and 274 nm, and a mixture of 40% water/methanol at 286 nm. The purity was determined as the percentage ratio of the area of the compound's peak and the total area.
Antimicrobial assays of the synthesized compounds against C. albicans, E. coli and S. aureus via the diffusion method[73–75]
Biological assay – microorganisms, media and inocula
For the antimicrobial evaluation, strains from the American Type Culture Collection (ATCC), Rockville, MD, USA, were used. Bacteria used were Escherichia coli ATCC 11775, Staphylococcus aureus ATCC 6538P, and yeast Candida albicans ATCC 10231.The bacteria used were cultivated on Mueller-Hinton agar (MHA – Difco) at 35 °C for 24 h. Cell suspension in saline (0.86%) was adjusted to give a final concentration of 1.5 × 108 cell per mL, standardized with 0.5 on the McFarland scale (λ = 530 nm).[76] The fungi were cultivated on Sabouraud dextrose agar (SDA-Difco). The yeast was prepared according to Pfaller et al. (1988),[77] adjusting the suspension to give a final concentration of between 1.0 × 106 and 5.0 × 106 cell per mL, also standardized with 0.5 on the McFarland scale (λ = 530 nm).
MIC determination and experimental conditions
The minimum inhibitory concentration (MIC) was determined for the organisms by the agar dilution method, which was carried out on slants (1 mL). Stock solutions of each compound in dimethylsulfoxide (DMSO) were diluted to give serial two-fold dilutions which were added to each medium (MHA for bacteria and SDA for yeast), resulting in concentrations ranging from 1000 to 1.95 μg mL−1. A volume of 1 μL of inoculum suspension, prepared previously, was inoculated with a sterile loop to each slant, except for the sterile control. The antibacterial and antifungal agents, gentamicin sulfate (Sigma G3632, USA) and ketoconazole (Sigma K1003, USA), respectively, were included in the assay as positive control. The final concentration of DMSO in the assay did not exceed 2%. A drug-free saline solution (0.86%) was used as a blank control. Each assay was repeated three times. The slants were incubated at 35 °C for the bacteria and yeast. MICs were visually recorded at 24 h for bacteria and 48 h for yeast.
Author contributions
The manuscript was written through contributions of all authors.
Declarations of interest
The authors have no competing financial interests to declare.
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