Literature DB >> 35796980

Establishment and Maintenance of Open Ribosomal RNA Gene Chromatin States in Eukaryotes.

Christopher Schächner1, Philipp E Merkl1,2, Michael Pilsl1, Katrin Schwank1, Kristin Hergert1, Sebastian Kruse1, Philipp Milkereit3, Herbert Tschochner4, Joachim Griesenbeck5.   

Abstract

In growing eukaryotic cells, nuclear ribosomal (r)RNA synthesis by RNA polymerase (RNAP) I accounts for the vast majority of cellular transcription. This high output is achieved by the presence of multiple copies of rRNA genes in eukaryotic genomes transcribed at a high rate. In contrast to most of the other transcribed genomic loci, actively transcribed rRNA genes are largely devoid of nucleosomes adapting a characteristic "open" chromatin state, whereas a significant fraction of rRNA genes resides in a transcriptionally inactive nucleosomal "closed" chromatin state. Here, we review our current knowledge about the nature of open rRNA gene chromatin and discuss how this state may be established.
© 2022. The Author(s).

Entities:  

Keywords:  Chromatin; Chromatin endogenous cleavage (ChEC); Chromatin immunoprecipitation (ChIP ); Electron microscopy (EM); High mobility group (HMG) box proteins; Hmo1; Nucleolar organizer region (NOR); Nucleolus; Nucleosome; Preinitiation complex (PIC); Psoralen cross-linking; RNA polymerase I; Ribosomal DNA; Ribosomal RNA genes; Transcription; Upstream binding factor (UBF)

Mesh:

Substances:

Year:  2022        PMID: 35796980     DOI: 10.1007/978-1-0716-2501-9_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  104 in total

Review 1.  Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome.

Authors:  R D Kornberg; Y Lorch
Journal:  Cell       Date:  1999-08-06       Impact factor: 41.582

2.  Chromatin organization of active ribosomal RNA genes.

Authors:  Attila Németh; Gernot Längst
Journal:  Epigenetics       Date:  2008-09-04       Impact factor: 4.528

Review 3.  Nucleosome structure(s) and stability: variations on a theme.

Authors:  Andrew J Andrews; Karolin Luger
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

Review 4.  Chromatin states at ribosomal DNA loci.

Authors:  Stephan Hamperl; Manuel Wittner; Virginia Babl; Jorge Perez-Fernandez; Herbert Tschochner; Joachim Griesenbeck
Journal:  Biochim Biophys Acta       Date:  2013-01-03

Review 5.  Epigenetic control of RNA polymerase I transcription in mammalian cells.

Authors:  Ingrid Grummt; Gernot Längst
Journal:  Biochim Biophys Acta       Date:  2012-10-12

Review 6.  The Epigenetic Pathways to Ribosomal DNA Silencing.

Authors:  Rakesh Srivastava; Rashmi Srivastava; Seong Hoon Ahn
Journal:  Microbiol Mol Biol Rev       Date:  2016-06-01       Impact factor: 11.056

Review 7.  Regulation of RNA Polymerase I Transcription in Development, Disease, and Aging.

Authors:  Samim Sharifi; Holger Bierhoff
Journal:  Annu Rev Biochem       Date:  2018-03-28       Impact factor: 23.643

Review 8.  The RNA polymerase I transcription machinery: an emerging target for the treatment of cancer.

Authors:  Denis Drygin; William G Rice; Ingrid Grummt
Journal:  Annu Rev Pharmacol Toxicol       Date:  2010       Impact factor: 13.820

Review 9.  Structure and function of ribosomal RNA gene chromatin.

Authors:  Joanna L Birch; Joost C B M Zomerdijk
Journal:  Biochem Soc Trans       Date:  2008-08       Impact factor: 5.407

Review 10.  Nucleolus and chromatin.

Authors:  Christian Schöfer; Klara Weipoltshammer
Journal:  Histochem Cell Biol       Date:  2018-07-25       Impact factor: 4.304

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