Literature DB >> 23291532

Chromatin states at ribosomal DNA loci.

Stephan Hamperl1, Manuel Wittner, Virginia Babl, Jorge Perez-Fernandez, Herbert Tschochner, Joachim Griesenbeck.   

Abstract

Eukaryotic transcription of ribosomal RNAs (rRNAs) by RNA polymerase I can account for more than half of the total cellular transcripts depending on organism and growth condition. To support this level of expression, eukaryotic rRNA genes are present in multiple copies. Interestingly, these genes co-exist in different chromatin states that may differ significantly in their nucleosome content and generally correlate well with transcriptional activity. Here we review how these chromatin states have been discovered and characterized focusing particularly on their structural protein components. The establishment and maintenance of rRNA gene chromatin states and their impact on rRNA synthesis are discussed. This article is part of a Special Issue entitled: Transcription by Odd Pols.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2013        PMID: 23291532     DOI: 10.1016/j.bbagrm.2012.12.007

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  38 in total

1.  SHPRH regulates rRNA transcription by recognizing the histone code in an mTOR-dependent manner.

Authors:  Deokjae Lee; Jungeun An; Young-Un Park; Hungjiun Liaw; Roger Woodgate; Jun Hong Park; Kyungjae Myung
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-11       Impact factor: 11.205

2.  HP1 knockdown is associated with abnormal condensation of almost all chromatin types in a grasshopper (Eyprepocnemis plorans).

Authors:  Mercedes Ruiz-Estévez; Mohammed Bakkali; Josefa Cabrero; Juan Pedro M Camacho; María Dolores López-León
Journal:  Chromosome Res       Date:  2014-01-08       Impact factor: 5.239

3.  Genome-Wide Analysis of the Arabidopsis Replication Timing Program.

Authors:  Lorenzo Concia; Ashley M Brooks; Emily Wheeler; Gregory J Zynda; Emily E Wear; Chantal LeBlanc; Jawon Song; Tae-Jin Lee; Pete E Pascuzzi; Robert A Martienssen; Matthew W Vaughn; William F Thompson; Linda Hanley-Bowdoin
Journal:  Plant Physiol       Date:  2018-01-04       Impact factor: 8.340

4.  Loss of nucleolar histone chaperone NPM1 triggers rearrangement of heterochromatin and synergizes with a deficiency in DNA methyltransferase DNMT3A to drive ribosomal DNA transcription.

Authors:  Karl Holmberg Olausson; Monica Nistér; Mikael S Lindström
Journal:  J Biol Chem       Date:  2014-10-27       Impact factor: 5.157

Review 5.  Coordinated Control of rRNA Processing by RNA Polymerase I.

Authors:  Catherine E Scull; David A Schneider
Journal:  Trends Genet       Date:  2019-07-26       Impact factor: 11.639

Review 6.  Are all repeats created equal? Understanding DNA repeats at an individual level.

Authors:  Jinpu Yang; Fei Li
Journal:  Curr Genet       Date:  2016-06-03       Impact factor: 3.886

7.  Genomic Copy-Number Loss Is Rescued by Self-Limiting Production of DNA Circles.

Authors:  Andrés Mansisidor; Temistocles Molinar; Priyanka Srivastava; Demetri D Dartis; Adriana Pino Delgado; Hannah G Blitzblau; Hannah Klein; Andreas Hochwagen
Journal:  Mol Cell       Date:  2018-10-04       Impact factor: 17.970

Review 8.  Targeting RNA polymerase I to treat MYC-driven cancer.

Authors:  G Poortinga; L M Quinn; R D Hannan
Journal:  Oncogene       Date:  2014-03-10       Impact factor: 9.867

9.  Non-Coding, RNAPII-Dependent Transcription at the Promoters of rRNA Genes Regulates Their Chromatin State in S. cerevisiae.

Authors:  Emma Lesage; Jorge Perez-Fernandez; Sophie Queille; Christophe Dez; Olivier Gadal; Marta Kwapisz
Journal:  Noncoding RNA       Date:  2021-07-11

10.  Large-scale organization of ribosomal DNA chromatin is regulated by Tip5.

Authors:  Karina Zillner; Michael Filarsky; Katrin Rachow; Michael Weinberger; Gernot Längst; Attila Németh
Journal:  Nucleic Acids Res       Date:  2013-04-10       Impact factor: 16.971

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