Literature DB >> 18631128

Structure and function of ribosomal RNA gene chromatin.

Joanna L Birch1, Joost C B M Zomerdijk.   

Abstract

Transcription of the major ribosomal RNAs by Pol I (RNA polymerase I) is a key determinant of ribosome biogenesis, driving cell growth and proliferation in eukaryotes. Hundreds of copies of rRNA genes are present in each cell, and there is evidence that the cellular control of Pol I transcription involves adjustments to the number of rRNA genes actively engaged in transcription, as well as to the rate of transcription from each active gene. Chromatin structure is inextricably linked to rRNA gene activity, and the present review highlights recent advances in this area.

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Year:  2008        PMID: 18631128      PMCID: PMC3858719          DOI: 10.1042/BST0360619

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  86 in total

Review 1.  At the crossroads of growth control; making ribosomal RNA.

Authors:  Tom Moss
Journal:  Curr Opin Genet Dev       Date:  2004-04       Impact factor: 5.578

2.  The chromatin remodeling complex NoRC and TTF-I cooperate in the regulation of the mammalian rRNA genes in vivo.

Authors:  Attila Németh; Ralf Strohner; Ingrid Grummt; Gernot Längst
Journal:  Nucleic Acids Res       Date:  2004-08-03       Impact factor: 16.971

3.  Upstream binding factor association induces large-scale chromatin decondensation.

Authors:  Danyang Chen; Andrew S Belmont; Sui Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-11       Impact factor: 11.205

4.  A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA.

Authors:  S Gottlieb; R E Esposito
Journal:  Cell       Date:  1989-03-10       Impact factor: 41.582

5.  Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle.

Authors:  A Conconi; R M Widmer; T Koller; J M Sogo
Journal:  Cell       Date:  1989-06-02       Impact factor: 41.582

6.  Visualization of nucleolar genes.

Authors:  O L Miller; B R Beatty
Journal:  Science       Date:  1969-05-23       Impact factor: 47.728

7.  Chromatin structure differs between coding and upstream flanking sequences of the yeast 35S ribosomal genes.

Authors:  D Lohr
Journal:  Biochemistry       Date:  1983-02-15       Impact factor: 3.162

8.  The Treacher Collins syndrome (TCOF1) gene product is involved in ribosomal DNA gene transcription by interacting with upstream binding factor.

Authors:  Benigno C Valdez; Dale Henning; Rolando B So; Jill Dixon; Michael J Dixon
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-12       Impact factor: 11.205

9.  Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.

Authors:  H M Jantzen; A Admon; S P Bell; R Tjian
Journal:  Nature       Date:  1990-04-26       Impact factor: 49.962

10.  ChIC and ChEC; genomic mapping of chromatin proteins.

Authors:  Manfred Schmid; Thérèse Durussel; Ulrich K Laemmli
Journal:  Mol Cell       Date:  2004-10-08       Impact factor: 17.970

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  36 in total

1.  BLM helicase facilitates RNA polymerase I-mediated ribosomal RNA transcription.

Authors:  Patrick M Grierson; Kate Lillard; Gregory K Behbehani; Kelly A Combs; Saumitri Bhattacharyya; Samir Acharya; Joanna Groden
Journal:  Hum Mol Genet       Date:  2011-11-21       Impact factor: 6.150

Review 2.  Nucleolar DNA: the host and the guests.

Authors:  E Smirnov; D Cmarko; T Mazel; M Hornáček; I Raška
Journal:  Histochem Cell Biol       Date:  2016-02-04       Impact factor: 4.304

3.  Transcription termination by nuclear RNA polymerases.

Authors:  Patricia Richard; James L Manley
Journal:  Genes Dev       Date:  2009-06-01       Impact factor: 11.361

4.  Angiogenin stimulates ribosomal RNA transcription by epigenetic activation of the ribosomal DNA promoter.

Authors:  Jinghao Sheng; Wenhao Yu; Xiangwei Gao; Zhengping Xu; Guo-Fu Hu
Journal:  J Cell Physiol       Date:  2014-04       Impact factor: 6.384

5.  Reduced rRNA expression and increased rDNA promoter methylation in CD34+ cells of patients with myelodysplastic syndromes.

Authors:  Aparna Raval; Kunju J Sridhar; Shripa Patel; Brit B Turnbull; Peter L Greenberg; Beverly S Mitchell
Journal:  Blood       Date:  2012-10-15       Impact factor: 22.113

Review 6.  Dysregulation of RNA polymerase I transcription during disease.

Authors:  K M Hannan; E Sanij; L I Rothblum; R D Hannan; R B Pearson
Journal:  Biochim Biophys Acta       Date:  2012-11-12

Review 7.  Basic mechanisms in RNA polymerase I transcription of the ribosomal RNA genes.

Authors:  Sarah J Goodfellow; Joost C B M Zomerdijk
Journal:  Subcell Biochem       Date:  2013

Review 8.  TFIIB-related factors in RNA polymerase I transcription.

Authors:  Bruce A Knutson; Steven Hahn
Journal:  Biochim Biophys Acta       Date:  2012-08-30

9.  Active VSG expression sites in Trypanosoma brucei are depleted of nucleosomes.

Authors:  Tara M Stanne; Gloria Rudenko
Journal:  Eukaryot Cell       Date:  2009-11-13

10.  FACT facilitates chromatin transcription by RNA polymerases I and III.

Authors:  Joanna L Birch; Bertrand C-M Tan; Kostya I Panov; Tatiana B Panova; Jens S Andersen; Tom A Owen-Hughes; Jackie Russell; Sheng-Chung Lee; Joost C B M Zomerdijk
Journal:  EMBO J       Date:  2009-02-12       Impact factor: 11.598

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