Literature DB >> 35781409

Random conical tilt reconstruction without particle picking in cryo-electron microscopy.

Ti Yen Lan1, Nicolas Boumal2, Amit Singer1.   

Abstract

A method is proposed to reconstruct the 3D molecular structure from micrographs collected at just one sample tilt angle in the random conical tilt scheme in cryo-electron microscopy. The method uses autocorrelation analysis on the micrographs to estimate features of the molecule which are invariant under certain nuisance parameters such as the positions of molecular projections in the micrographs. This enables the molecular structure to be reconstructed directly from micrographs, completely circumventing the need for particle picking. Reconstructions are demonstrated with simulated data and the effect of the missing-cone region is investigated. These results show promise to reduce the size limit for single-particle reconstruction in cryo-electron microscopy.

Entities:  

Keywords:  autocorrelation analysis; cryo-EM; random conical tilt; structure reconstruction

Mesh:

Year:  2022        PMID: 35781409      PMCID: PMC9252301          DOI: 10.1107/S2053273322005071

Source DB:  PubMed          Journal:  Acta Crystallogr A Found Adv        ISSN: 2053-2733            Impact factor:   2.331


  14 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  Iterative phasing for fluctuation X-ray scattering.

Authors:  Jeffrey J Donatelli; Peter H Zwart; James A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

Review 3.  Three-dimensional reconstruction of single particles from random and nonrandom tilt series.

Authors:  M Radermacher
Journal:  J Electron Microsc Tech       Date:  1988-08

4.  The reconstruction of structure from electron micrographs of randomly oriented particles.

Authors:  Z Kam
Journal:  J Theor Biol       Date:  1980-01-07       Impact factor: 2.691

5.  Bispectrum Inversion with Application to Multireference Alignment.

Authors:  Tamir Bendory; Nicolas Boumal; Chao Ma; Zhizhen Zhao; Amit Singer
Journal:  IEEE Trans Signal Process       Date:  2017-11-20       Impact factor: 4.931

6.  Multi-target Detection with an Arbitrary Spacing Distribution.

Authors:  Ti-Yen Lan; Tamir Bendory; Nicolas Boumal; Amit Singer
Journal:  IEEE Trans Signal Process       Date:  2020-02-24       Impact factor: 4.931

7.  Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli.

Authors:  M Radermacher; T Wagenknecht; A Verschoor; J Frank
Journal:  J Microsc       Date:  1987-05       Impact factor: 1.758

Review 8.  The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules.

Authors:  R Henderson
Journal:  Q Rev Biophys       Date:  1995-05       Impact factor: 5.318

9.  Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited.

Authors:  C O S Sorzano; M Alcorlo; J M de la Rosa-Trevín; R Melero; I Foche; A Zaldívar-Peraza; L del Cano; J Vargas; V Abrishami; J Otón; R Marabini; J M Carazo
Journal:  Sci Rep       Date:  2015-09-22       Impact factor: 4.379

10.  Structure determination from single molecule X-ray scattering with three photons per image.

Authors:  Benjamin von Ardenne; Martin Mechelke; Helmut Grubmüller
Journal:  Nat Commun       Date:  2018-06-18       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.