Literature DB >> 26240348

Iterative phasing for fluctuation X-ray scattering.

Jeffrey J Donatelli1, Peter H Zwart2, James A Sethian3.   

Abstract

Fluctuation X-ray scattering (FXS) is an extension of small- and wide-angle X-ray scattering in which the X-ray snapshots are taken below rotational diffusion times. This technique, performed using a free electron laser or ultrabright synchrotron source, provides significantly more experimental information compared with traditional solution scattering methods. We develop a multitiered iterative phasing algorithm to determine the underlying structure of the scattering object from FXS data.

Entities:  

Keywords:  fluctuation scattering; iterative phasing; polar Fourier transform

Mesh：

Year:  2015        PMID： 26240348      PMCID： PMC4547282          DOI： 10.1073/pnas.1513738112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  16 in total

1.  Determination of domain structure of proteins from X-ray solution scattering.

Authors:  D I Svergun; M V Petoukhov; M H Koch
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

2.  Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing.

Authors:  D I Svergun
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

3.  Three-dimensional single-particle imaging using angular correlations from X-ray laser data.

Authors:  Haiguang Liu; Billy K Poon; Dilano K Saldin; John C H Spence; Peter H Zwart
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4.  Fiber diffraction without fibers.

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5.  High-throughput SAXS for the characterization of biomolecules in solution: a practical approach.

Authors:  Kevin N Dyer; Michal Hammel; Robert P Rambo; Susan E Tsutakawa; Ivan Rodic; Scott Classen; John A Tainer; Greg L Hura
Journal:  Methods Mol Biol       Date:  2014

6.  Reconstruction of an object from the modulus of its Fourier transform.

Authors:  J R Fienup
Journal:  Opt Lett       Date:  1978-07-01       Impact factor: 3.776

7.  Single-particle structure determination by correlations of snapshot X-ray diffraction patterns.

Authors:  D Starodub; A Aquila; S Bajt; M Barthelmess; A Barty; C Bostedt; J D Bozek; N Coppola; R B Doak; S W Epp; B Erk; L Foucar; L Gumprecht; C Y Hampton; A Hartmann; R Hartmann; P Holl; S Kassemeyer; N Kimmel; H Laksmono; M Liang; N D Loh; L Lomb; A V Martin; K Nass; C Reich; D Rolles; B Rudek; A Rudenko; J Schulz; R L Shoeman; R G Sierra; H Soltau; J Steinbrener; F Stellato; S Stern; G Weidenspointner; M Frank; J Ullrich; L Strüder; I Schlichting; H N Chapman; J C H Spence; M J Bogan
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

8.  Fluctuation x-ray scattering from biological particles in frozen solution by using synchrotron radiation.

Authors:  Z Kam; M H Koch; J Bordas
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

9.  Crystal structures of a pentameric ligand-gated ion channel provide a mechanism for activation.

Authors:  Ludovic Sauguet; Azadeh Shahsavar; Frédéric Poitevin; Christèle Huon; Anaïs Menny; Àkos Nemecz; Ahmed Haouz; Jean-Pierre Changeux; Pierre-Jean Corringer; Marc Delarue
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-23       Impact factor: 11.205

10.  Structural basis for engagement by complement factor H of C3b on a self surface.

Authors:  Hugh P Morgan; Christoph Q Schmidt; Mara Guariento; Bärbel S Blaum; Dominic Gillespie; Andrew P Herbert; David Kavanagh; Haydyn D T Mertens; Dmitri I Svergun; Conny M Johansson; Dušan Uhrín; Paul N Barlow; Jonathan P Hannan
Journal:  Nat Struct Mol Biol       Date:  2011-02-13       Impact factor: 15.369
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  15 in total

1.  Reduction of small-angle scattering profiles to finite sets of structural invariants.

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Journal:  Acta Crystallogr A Found Adv       Date:  2017-06-09       Impact factor: 2.290

2.  Reconstruction from limited single-particle diffraction data via simultaneous determination of state, orientation, intensity, and phase.

Authors:  Jeffrey J Donatelli; James A Sethian; Peter H Zwart
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-26       Impact factor: 11.205

3.  Ab initio electron density determination directly from solution scattering data.

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4.  Random conical tilt reconstruction without particle picking in cryo-electron microscopy.

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Review 5.  XFELs for structure and dynamics in biology.

Authors:  J C H Spence
Journal:  IUCrJ       Date:  2017-05-10       Impact factor: 4.769

6.  Orientational order of liquids and glasses via fluctuation diffraction.

Authors:  Andrew V Martin
Journal:  IUCrJ       Date:  2017-01-01       Impact factor: 4.769

7.  Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Authors:  Ruslan P Kurta; Jeffrey J Donatelli; Chun Hong Yoon; Peter Berntsen; Johan Bielecki; Benedikt J Daurer; Hasan DeMirci; Petra Fromme; Max Felix Hantke; Filipe R N C Maia; Anna Munke; Carl Nettelblad; Kanupriya Pande; Hemanth K N Reddy; Jonas A Sellberg; Raymond G Sierra; Martin Svenda; Gijs van der Schot; Ivan A Vartanyants; Garth J Williams; P Lourdu Xavier; Andrew Aquila; Peter H Zwart; Adrian P Mancuso
Journal:  Phys Rev Lett       Date:  2017-10-12       Impact factor: 9.161

8.  Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods.

Authors:  Shufen Ma; Haiguang Liu
Journal:  J Appl Crystallogr       Date:  2016-03-18       Impact factor: 3.304

9.  Dragonfly: an implementation of the expand-maximize-compress algorithm for single-particle imaging.

Authors:  Kartik Ayyer; Ti-Yen Lan; Veit Elser; N Duane Loh
Journal:  J Appl Crystallogr       Date:  2016-06-20       Impact factor: 3.304

10.  Start-to-end simulation of single-particle imaging using ultra-short pulses at the European X-ray Free-Electron Laser.

Authors:  Carsten Fortmann-Grote; Alexey Buzmakov; Zoltan Jurek; Ne-Te Duane Loh; Liubov Samoylova; Robin Santra; Evgeny A Schneidmiller; Thomas Tschentscher; Sergey Yakubov; Chun Hong Yoon; Michael V Yurkov; Beata Ziaja-Motyka; Adrian P Mancuso
Journal:  IUCrJ       Date:  2017-09-01       Impact factor: 4.769
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