Literature DB >> 28598642

Twist-Bend Coupling and the Torsional Response of Double-Stranded DNA.

Stefanos K Nomidis1,2, Franziska Kriegel3, Willem Vanderlinden3,4, Jan Lipfert3, Enrico Carlon1.   

Abstract

Recent magnetic tweezers experiments have reported systematic deviations of the twist response of double-stranded DNA from the predictions of the twistable wormlike chain model. Here we show, by means of analytical results and computer simulations, that these discrepancies can be resolved if a coupling between twist and bend is introduced. We obtain an estimate of 40±10  nm for the twist-bend coupling constant. Our simulations are in good agreement with high-resolution, magnetic-tweezers torque data. Although the existence of twist-bend coupling was predicted long ago [J. Marko and E. Siggia, Macromolecules 27, 981 (1994)MAMOBX0024-929710.1021/ma00082a015], its effects on the mechanical properties of DNA have been so far largely unexplored. We expect that this coupling plays an important role in several aspects of DNA statics and dynamics.

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Year:  2017        PMID: 28598642     DOI: 10.1103/PhysRevLett.118.217801

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  14 in total

1.  Twist-bend coupling and the statistical mechanics of the twistable wormlike-chain model of DNA: Perturbation theory and beyond.

Authors:  Stefanos K Nomidis; Enrico Skoruppa; Enrico Carlon; John F Marko
Journal:  Phys Rev E       Date:  2019-03       Impact factor: 2.529

2.  DNA elasticity from coarse-grained simulations: The effect of groove asymmetry.

Authors:  Enrico Skoruppa; Michiel Laleman; Stefanos K Nomidis; Enrico Carlon
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

3.  Environmentally Controlled Curvature of Single Collagen Proteins.

Authors:  Nagmeh Rezaei; Aaron Lyons; Nancy R Forde
Journal:  Biophys J       Date:  2018-09-13       Impact factor: 4.033

4.  Bend-Induced Twist Waves and the Structure of Nucleosomal DNA.

Authors:  Enrico Skoruppa; Stefanos K Nomidis; John F Marko; Enrico Carlon
Journal:  Phys Rev Lett       Date:  2018-08-24       Impact factor: 9.161

5.  Dynamics of the Buckling Transition in Double-Stranded DNA and RNA.

Authors:  Katharina Ott; Linda Martini; Jan Lipfert; Ulrich Gerland
Journal:  Biophys J       Date:  2020-02-29       Impact factor: 4.033

6.  The temperature dependence of the helical twist of DNA.

Authors:  Franziska Kriegel; Christian Matek; Tomáš Dršata; Klara Kulenkampff; Sophie Tschirpke; Martin Zacharias; Filip Lankaš; Jan Lipfert
Journal:  Nucleic Acids Res       Date:  2018-09-06       Impact factor: 16.971

7.  Design Approaches and Computational Tools for DNA Nanostructures.

Authors:  Heeyuen Koh; Jae Gyung Lee; Jae Young Lee; Ryan Kim; Osamu Tabata; Kim Jin-Woo; DO-Nyun Kim
Journal:  IEEE Open J Nanotechnol       Date:  2021-10-14

8.  Mars, a molecule archive suite for reproducible analysis and reporting of single-molecule properties from bioimages.

Authors:  Nadia M Huisjes; Thomas M Retzer; Matthias J Scherr; Rohit Agarwal; Lional Rajappa; Barbara Safaric; Anita Minnen; Karl E Duderstadt
Journal:  Elife       Date:  2022-09-13       Impact factor: 8.713

9.  Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches.

Authors:  Parth Rakesh Desai; Sumitabha Brahmachari; John F Marko; Siddhartha Das; Keir C Neuman
Journal:  Nucleic Acids Res       Date:  2020-11-04       Impact factor: 19.160

Review 10.  Energetics of twisted DNA topologies.

Authors:  Wenxuan Xu; David Dunlap; Laura Finzi
Journal:  Biophys J       Date:  2021-05-08       Impact factor: 3.699

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