Literature DB >> 33646812

Advancing Biophysics Using DNA Origami.

Wouter Engelen1, Hendrik Dietz1.   

Abstract

DNA origami enables the bottom-up construction of chemically addressable, nanoscale objects with user-defined shapes and tailored functionalities. As such, not only can DNA origami objects be used to improve existing experimental methods in biophysics, but they also open up completely new avenues of exploration. In this review, we discuss basic biophysical concepts that are relevant for prospective DNA origami users. We summarize biochemical strategies for interfacing DNA origami with biomolecules of interest. We describe various applications of DNA origami, emphasizing the added value or new biophysical insights that can be generated: rulers and positioning devices, force measurement and force application devices, alignment supports for structural analysis for biomolecules in cryogenic electron microscopy and nuclear magnetic resonance, probes for manipulating and interacting with lipid membranes, and programmable nanopores. We conclude with some thoughts on so-far little explored opportunities for using DNA origami in more complex environments such as the cell or even organisms.

Entities:  

Keywords:  DNA nanotechnology; DNA origami; FRET; channels; cryo-EM; enzymes; force spectroscopy; kinetics; membranes; motors; nanopores; self-assembly; single molecule; super-resolution

Mesh:

Substances:

Year:  2021        PMID: 33646812     DOI: 10.1146/annurev-biophys-110520-125739

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  5 in total

1.  Design Approaches and Computational Tools for DNA Nanostructures.

Authors:  Heeyuen Koh; Jae Gyung Lee; Jae Young Lee; Ryan Kim; Osamu Tabata; Kim Jin-Woo; DO-Nyun Kim
Journal:  IEEE Open J Nanotechnol       Date:  2021-10-14

2.  High-Force Application by a Nanoscale DNA Force Spectrometer.

Authors:  Michael Darcy; Kyle Crocker; Yuchen Wang; Jenny V Le; Golbarg Mohammadiroozbahani; Mahmoud A S Abdelhamid; Timothy D Craggs; Carlos E Castro; Ralf Bundschuh; Michael G Poirier
Journal:  ACS Nano       Date:  2022-04-06       Impact factor: 18.027

3.  Planar 2D wireframe DNA origami.

Authors:  Xiao Wang; Shanshan Li; Hyungmin Jun; Torsten John; Kaiming Zhang; Hannah Fowler; Jonathan P K Doye; Wah Chiu; Mark Bathe
Journal:  Sci Adv       Date:  2022-05-20       Impact factor: 14.957

4.  Anion-specific structure and stability of guanidinium-bound DNA origami.

Authors:  Marcel Hanke; Daniel Dornbusch; Christoph Hadlich; Andre Rossberg; Niklas Hansen; Guido Grundmeier; Satoru Tsushima; Adrian Keller; Karim Fahmy
Journal:  Comput Struct Biotechnol J       Date:  2022-05-23       Impact factor: 6.155

5.  Asymmetric patterning drives the folding of a tripodal DNA nanotweezer.

Authors:  Daniel Saliba; Tuan Trinh; Christophe Lachance-Brais; Alexander L Prinzen; Felix J Rizzuto; Donatien de Rochambeau; Hanadi F Sleiman
Journal:  Chem Sci       Date:  2021-11-16       Impact factor: 9.825

  5 in total

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