Gastrointestinal Involvement in SARS-CoV-2 Infection.

SARS-CoV-2 has evolved into a virus that primarily results in mild or asymptomatic disease, making its transmission more challenging to control. In addition to the respiratory tract, SARS-CoV-2 also infects the digestive tract. Some gastrointestinal symptoms occur with or before respiratory symptoms in patients with COVID-19. Respiratory infections are known to cause intestinal immune impairment and gastrointestinal symptoms. When the intestine is inflamed, cytokines affect the lung immune response and inflammation through blood circulation. The gastrointestinal microbiome may be a modifiable factor in determining the risk of SARS-CoV-2 infection and disease severity. The development of oral SARS-CoV-2 vaccine candidates and the maintenance of gut microbiota profiles may contribute to the early control of COVID-19 outbreaks. To this end, this review summarizes information on the gastrointestinal complications caused by SARS-CoV-2, SARS-CoV-2 infection, the gastrointestinal-lung axis immune response, potential control strategies for oral vaccine candidates and maintaining intestinal microbiota homeostasis.

1. Introduction

A high-incidence respiratory illness, coronavirus disease 2019 (COVID-19), caused by the human-to-human transmission of the novel coronavirus (severe acute respiratory syndrome–coronavirus 2 (SARS-CoV-2)) was identified in December 2019 [1]. COVID-19 has since become a global pandemic [2], leading the World Health Organization to declare a global public health emergency [3]. SARS-CoV-2 is more transmissible than SARS-CoV [4]. Different variants of SARS-CoV-2 have been reported, such as Alpha (B.1.1.7), Beta (B.1.351), Gamma (P.1), Delta (B.1.617.2), and Omicron (B.1.1.529). Delta variants (B.1.617.2) with increased infectivity, severe disease course, and reduced therapeutic efficacy were designated as variants of concern (VOC) on 15 June 2021 [5]. However, on 14 April 2022, the U.S. government SARS-CoV-2 Interagency Group based on a significant and sustained reduction in its national and regional proportions over time, stated that Delta (B.1.617.2) did not currently pose a significant risk to public health in the United States, thereby downgrading Delta from VOC to variant being monitored [5]. Additionally, the Omicron variant (B.1.1.529), a new severely mutated SARS-CoV-2 variant, was designated as a VOC on 30 November 2021, based on the following: detection of cases attributed to Omicron in multiple countries, the number and locations of substitutions in the spike protein, reduction in neutralization by sera from vaccinated or convalescent individuals, and reduced susceptibility to certain monoclonal antibody treatments [5,6].

SARS-CoV-2 primarily attacks host lung cells. Thus, the main symptom of COVID-19 is a respiratory infection. SARS-CoV-2 RNA can be detected in the stool in approximately 41% (27–55%) of COVID-19 cases. Viral shedding in feces was 41% (27–55%) [7], accompanied by gastrointestinal symptoms in approximately 18% (12–25%), such as nausea, vomiting, and diarrhea [8,9]. SARS-CoV-2 virions can be removed via mucociliary clearance or enter the gastrointestinal tract from the esophagus. While gastrointestinal symptoms are common, cases of COVID-19 with gastrointestinal symptoms are more likely to develop acute respiratory distress and liver damage and have a poorer prognosis [10]. For instance, the gastrointestinal bleeding rate was 2% (1–4%) [11], and gastrointestinal mortality was 1% (0–3%) [12] (Figure 1). Therefore, more attention has been paid recently to the gastrointestinal manifestations of SARS-CoV-2 [13,14,15,16,17].

Figure 1

Gastrointestinal symptoms, bleeding, and mortality in patients with COVID-19. The 95% confidence interval (95% CI); random-effects model estimate. For the I2 statistic, the level of heterogeneity was defined as low (25–50%), moderate (50–75%), or high (>75%). Squares indicate proportions. GI, gastrointestinal. References: Cheung et al., 2020 [9]; Marasco et al., 2021 [11]; Parasa et al., 2020 [7]; Shehab et al., 2021 [12].

2. Gastrointestinal Complications Caused by SARS-CoV-2

Fever and respiratory symptoms are commonly present in patients with COVID-19; however, digestive symptoms, including anorexia, nausea, vomiting, and diarrhea are also commonly reported [9,13,14,15,16,17]. Gastrointestinal imaging findings include bowel wall thickening, sometimes with hyperemia and mesenteric thickening, fluid-filled large bowel, and rarely pneumatosis and ischemia [18].

In patients with COVID-19, the following prevalence of gastrointestinal symptoms has been reported in systematic reviews and meta-analysis: diarrhea (8–17%) [7,12,19,20,21,22,23], nausea or vomiting (4–20%) [7,12,19,21,22,23], loss of appetite (2–21%) [12,21], abdominal pain (3–20%) [12,21,22,23], anorexia (8–10%) [19,23], abdominal distension (1%) [19] and loss of taste (1–3%) [12,23] (Figure 2). Infectious diarrhea and malabsorption caused by SARS-CoV-2 infection may be due to the dysregulation of intestinal ion transporters [24], leading to inflammation and gastrointestinal symptoms [25]. Most gastrointestinal symptoms associated with COVID-19 are mild [26]. Diarrhea caused by SARS-CoV-2 may be the first symptom in patients with COVID-19 [21]. Additionally, a subset of patients with COVID-19 develop isolated gastrointestinal symptoms that may precede the development of respiratory symptoms [27,28] or have only digestive symptoms throughout the disease (2.9–16%) [13,21,27,28,29].

Figure 2

Gastrointestinal symptoms described in patients with COVID-19. The 95% confidence interval (95% CI); random-effects model estimate. For the I2 statistic, the level of heterogeneity was defined as low (25–50%), moderate (50–75%), or high (>75%). Squares indicate proportions. NA, not available. References: Bolia et al., 2021 [23]; Mao et al., 2020 [21]; Parasa et al., 2020 [7]; Shehab et al., 2021 [12]; Wang et al., 2021 [30]; Zarifian et al., 2021 [19]; Zeng et al., 2022 [20].

The incidence of gastrointestinal manifestations was higher in the later period of the pandemic than in the early period [31]. Patients with gastrointestinal symptoms are at an increased risk of developing acute respiratory distress syndrome [21,32]. The proportion of patients with severe COVID-19 and critically ill patients was significantly higher in those with gastrointestinal symptoms [21,31]. Patients with severe COVID-19 have a higher abdominal pain incidence than patients with non-severe disease [21,31]. There were no significant differences in loss of appetite, diarrhea, nausea, or vomiting in severely and non-severely ill patients with COVID-19 [21,30]. Significantly lower mortality in patients with COVID-19 with gastrointestinal symptoms showed better clinical outcomes than in patients without gastrointestinal symptoms [33,34,35].

COVID-19 exposure may increase the risk of thromboembolic events and associated ischemia [36,37,38], including limb venous thrombosis and pulmonary embolism [36,39,40,41]. Thromboembolic events in the gastrointestinal system, including mesenteric ischemia, are a potentially fatal clinical emergency with high mortality [42]. Large vessel arterial/venous thrombosis can be present in almost half of the patients with intestinal ischemia in COVID-19. The overall mortality of these patients with gastrointestinal ischemia and radiographically diagnosed mesenteric ischemia is 38.7 and 40%, respectively [43]. COVID-19 is known to be associated with elevated transaminase levels, as well as higher rates of intestinal obstruction and intestinal ischemia [32].

3. SARS-CoV-2 Infection

Coronaviruses are enveloped, positive-sense RNA viruses containing an ssRNA genome with a 5′-terminal cap and 3′-polyadenylation that infect various mammalian and avian species [44]. SARS-CoV-2 virus particles are formed from an envelope and membrane alone, with a spike protein forming the viral envelope. The spike protein enables the virus to attach the host cell membrane, and the nucleocapsid protein holds the virus’s RNA genome [45]. When the coronavirus genome is released into the host cytoplasm, a complex and highly regulated viral gene expression program is triggered [46]. Through co-translational and post-translational mechanisms, the viral proteases nonstructural proteins (nsp) 3, 5, and 16 are processed and released from pp1a (nsp1–11) and pp1ab (nsp1–10, nsp12–16). Fifteen of these constitute the viral replication and transcription complex [47], including RNA processing and modification enzymes, and RNA proofreading functions. The SARS-CoV-2 infection triggers an inflammatory immune response, during which lymph node-derived helper T cells and cytotoxic T cells infiltrate the site of infection to eliminate virus-infected cells [48].

3.1. Initial Steps of SARS-CoV-2 Infection

Virus entry into host cells is an essential part of the infection. SARS-CoV-2 enters and regulates cellular factors to promote replication [49], and infects cells through the endocytosis mechanism or fusion of the viral envelope with the host cell plasma membrane [46]. Coronaviruses encode surface glycosylated transmembrane proteins and spike protein-containing receptor-binding domains and fusion domains to mediate virus entry [46,50]. Spike protein subunits S1 and S2 mediate the attachment, with the simultaneous binding of two S-glycoprotein trimers to the cell surface protein angiotensin-converting enzyme 2 (ACE2) [51,52]. In addition, the cellular transmembrane protease serine 2 (TMPRSS2), which has a serine protease activity, is also required to initiate the spike protein priming [53]. The alignment of receptor-binding domain sequences of SARS-CoV-2 variants revealed that the Omicron variant has multiple mutations in the receptor-binding motif (Figure 3). Six mutations in the spike protein receptor-binding domain of the Omicron variant (B.1.1.529), including S477N, T478K, E484A, Q493R, Q498R, and Y505H, are responsible for the higher affinity for ACE2 (Figure 3). In addition, a mutation position G496S was also found in other Pango lineages of Omicron. Recent molecular dynamics simulations and ELISA bioassay results show that the Omicron variant binds human ACE2 with comparable binding affinity to wild-type SARS-CoV-2, but much weaker than the Delta variant [54]. However, the Omicron variant has a high risk of immune evasion and thus potential reduction in neutralization by postvaccination sera may make it easy to spread [54].

Figure 3

Multiple sequence alignment of the receptor-binding domains amino acid sequences of five SARS-CoV-2 variants. Contacting residues in the SARS-CoV-2 receptor-binding domain are indicated by an asterisk. The receptor-binding motif sequence is shown in red. The surface glycoprotein receptor-binding domain sequences are from GenBank, with the following accession protein ID: UFZ12739.1 (Alpha), QWW93436.1 (Beta), QWW27582.1 (Gamma), UAL04647.1 (Delta), and UKO09871.1 (Omicron).

3.2. Angiotensin-Converting Enzyme 2 Expression and Genetic Variation

The expression and distribution of ACE2 in humans is a potential infection route of SARS-CoV-2. The binding affinity of ACE2 to the SARS-CoV-2 outer domain is about 10- to 20-fold higher than that of SARS-CoV [52]. Transmembrane ACE2 is highly expressed in the ciliated, goblet, and surfactant-producing type II alveolar cells and type II epithelial cells [55]. These cells are mainly located in the lung, intestine (small intestinal epithelium), esophagus and pancreas, heart, kidney, and liver. However, lung ACE2 expression was concentrated in a small population of type II alveolar cells, likely resulting in relatively low lung ACE2 expression in the analysis of BioProject (PRJEB4337, Figure 4) [56,57]. Additionally, the gastrointestinal tract may be susceptible to SARS-CoV-2 infection due to widely expressed ACE2 and TMPRSS2 in the intestine, causing direct damage [14,58,59,60,61,62]. In children infected with SARS-CoV-2, the manifestations of common intestinal symptoms may be related to the higher expression of intestinal ACE2 in children [63].

Figure 4

mRNA expression of ACE2 in healthy human tissues. Source: BioProject: PRJEB4337.

Furthermore, amino acids regulate the secretion of antimicrobial peptides to maintain intestinal microbiota homeostasis [64]. ACE2 plays a vital role in the expression of amino acid transporters in the small intestine. ACE2 regulates amino acid uptake in intestinal epithelial cells, the expression of antimicrobial peptides, and gut microbiome ecology [65,66]. ACE2 can absorb nutrients from digested food and maintain osmotic and electrolyte balance throughout the gastrointestinal epithelial cells by regulating sodium-dependent amino acid and glucose transporters in the brush border of enterocytes [66]. ACE2 is also a key enzyme in the renin–angiotensin system (RAS) [67] and plays an important role in regulating intestinal inflammation and diarrhea [66]. Thus, the interaction between SARS-CoV-2 and ACE2 may disrupt the function of ACE2 and cause diarrhea.

Recent studies have found that genetic components of the ACE2 and TMPRSS2 genes can mediate the effects on the severity of COVID-19. East Asian populations have much higher allele frequencies in ACE2 expression quantitative trait locus variants, which may contribute to the differential susceptibility or response to SARS-CoV-2 [68]. The frequency of TMPRSS2 upregulated variants was higher in European and American populations than in Asian populations, implying that European and American populations may be relatively susceptible to SARS-CoV-2 infection [69]. A study of the genetic component of COVID-19 severity in Italians reported that ACE2 was not associated with COVID-19 severity/sex bias, but TMPRSS2 levels and genetic variation may be associated with higher susceptibility to COVID-19 severity [70].

3.3. SARS-CoV-2 Infection in the Gastrointestinal Tract

Viruses in the gastrointestinal tract can contribute to host health or disease by interacting with the mucus layer, epithelial cells, and potentially lamina propria immune cells. Variation in the gut virome may contribute to phenotypic variation by modulating the immunophenotype rather than acting as a pathogen [71]. SARS-CoV-2 RNA was detected in the stool of patients with COVID-19, implying that SARS-CoV-2 may be transmitted through the fecal–oral route [8,72,73]. A large proportion (29–53.4%) of patients with COVID-19 tested positive for SARS-CoV-2 RNA in stool [73,74]. An endoscopic sampling of different parts of the patient’s gastrointestinal tract was performed, and viral RNA was also detected in the esophagus, stomach, duodenum, and rectum [74]. Additionally, the SARS-CoV-2 viral nucleocapsid protein was detected in the cytoplasm of gastric, duodenal, and rectal glandular epithelial cells [59]. However, it is unclear whether the virus in the digestive system is derived from cellular debris from the respiratory system or consists of replicas in the digestive tract [75]. Therefore, early measures should be taken to prevent fecal–oral transmission [75].

The gastrointestinal tract is confirmed as an alternative route for SARS-CoV-2 infection in rhesus monkeys [76]. The SARS-CoV-2 virus can infect and replicate in human intestinal tissue [61], and viral toxin-mediated cellular damage causes gastroenteritis-like symptoms including diarrhea, nausea, vomiting, and abdominal pain. Fecal PCR returns a positive result in 36–53% of patients with COVID-19, approximately 2–5 days later than a sputum PCR positive [31]. Respiratory samples from patients with COVID-19 were positive for SARS-CoV-2 RNA for 16.7 days, but their stool samples were positive for 27.9 to 47 days [21,77]. Notably, the intragastric inoculation of rhesus monkeys with SARS-CoV-2 leads to dysfunctions in both respiratory and digestive systems [76]. Inflammatory cytokines are speculated to be a possible link in the pathogenesis of SARS-CoV-2 between the respiratory and digestive systems [76].

3.4. SARS-CoV-2 and Gut Microbiome

In a healthy gastrointestinal tract, the microbiota is rich in beneficial bacteria that help to maintain intestinal homeostasis, promote protective intestinal immune responses at mucosal surfaces, and limit excessive mucosal inflammation [78]. It consists of more than 100 trillion microorganisms and thousands of bacterial species [79,80]. The microbiota maintains a symbiotic relationship with the gut environment and forms a mutually beneficial relationship with the host. The gut microbiota can influence the maturation, development, and function of immune cells, as well as the activation of peripheral immune cells, including cellular and humoral immunity. Innate and adaptive immune cells are activated by the disruption of gut barrier integrity and release pro-inflammatory cytokines into the circulatory system, leading to systemic inflammation [81]. The entry of inflammatory cells, including neutrophils and lymphocytes, into the intestinal mucosa disrupts the gut microbiota [82].

Viral infection alters the permeability of the intestinal wall, leading to malabsorption by enterocytes [64]. Fecal calprotectin levels were elevated in patients infected with SARS-CoV-2, confirming that SARS-CoV-2 causes intestinal inflammation [83]. A recent comprehensive systematic review confirmed that the most common alteration in the bacterial composition of patients with COVID-19 was a depletion in the genera Ruminococcus, Alistipes, Eubacterium, Bifidobacterium, Faecalibacterium, Roseburia, Fusicathenibacter, and Blautia, as well as the enrichment of Eggerthella, Bacteroides, Actinomyces, Clostridium, Streptococcus, Rothia, and Collinsella [84]. Changes to the gut microbiome composition and function affect the respiratory tract through the common mucosal immune system, and respiratory dysbiosis also affects the digestive tract through immune regulation [85].

Alterations in the gut microbiome are associated with severity and poor prognosis in patients with COVID-19, such as increases in Bacteroides, Parabacteria, Clostridium, Bifidobacterium, Ruminococcus, Campylobacter, Rotella, Corynebacterium Pseudomonas, Megacoccus, Enterococcus, and Aspergillus, as well as reductions in Roseburia, Eubacterium, Lachnospira, Faecalibacterium, and Firmicutes/Bacteroidetes ratios [84]. The fungal gut microbiota of patients with severe/critical COVID-19 was characterized by decreased diversity, richness, and evenness, and increased relative abundance of Ascomycota phylum compared with non-severe COVID-19 [86]. Patients with severe SARS-CoV-2 infection had significantly lower bacterial diversity, and lower relative abundances of Bifidobacterium, Faecalibacterium, and Roseobacter in the gut microbiome, as well as increased Bacteroides spp. [87]. Thus, during the SARS-CoV-2 pandemic, gut microbiota correction may help to improve population immunity and protect public health [88].

4. Host Immune Response Induced by SARS-CoV-2

During the early stages of SARS-CoV infection, dendritic cells and macrophages exhibit a delayed release of cytokines and chemokines, followed by low concentrations of antiviral interferons and high concentrations of proinflammatory cytokines and chemokines [89,90,91]. Rapidly elevated cytokines and chemokines attract large numbers of inflammatory cells such as neutrophils and monocytes, causing tissue damage. Increased relative frequencies of circulating activated CD4+ and CD8+ T cells and plasmablasts are present in patients with COVID-19 [92]. Lymphocytosis is a common feature in patients with severe COVID-19 infection, with markedly reduced numbers of CD4+ T cells, CD8+ T cells, B cells, and natural killer cells [93].

ACE2-expressing cells in patients with COVID-19 express pro-inflammatory cytokines (PICs) including monocyte chemokine-1 (MCP-1), tumor growth factor-β1 (TGF-β1), tumor necrosis factor (TNF)-α, interleukin (IL)-1β, and IL-6 [94]; these cytokines can cause cytokine storms and lead to multiple organ damage. Cytokine storms may contribute to the pathogenesis of COVID-19, and may directly lead to immune cell death [95,96]. The serum cytokines showing elevated levels in patients with COVID-19-related cytokine storms include IL-1β, IL-2, IL-6, IL-7, IL-10, interferon-inducible protein (IP)-10, TNF, interferon-γ, macrophage inflammatory protein (MIP) 1α and 1β, plasma granulocyte colony-stimulating factor (G-SCF), MCP-1, and vascular endothelial growth factor (VEGF) [97,98] (Figure 5). High levels of IL-6 were associated with reduced survival in patients with COVID-19 [99].

Figure 5

Cytokine storm of the COVID-19 disease. G-SCF: plasma granulocyte colony-stimulating factor, IL: interleukin; IP: interferon-inducible protein; MCP-1: monocyte chemokine-1, MIP: macrophage inflammatory protein, TGF-β1: tumor growth factor-β1, TNF: tumor necrosis factor, VEGF: vascular endothelial growth factor.

4.1. Immune Response in the Gut Affects Gastrointestinal Tract

Digestive symptoms associated with SARS-CoV-2 infection may result from direct viral attack as well as tissue and organ damage from the immune response [59,100]. SARS-CoV-2 infection induces early neutralizing antibody responses, including systemic IgA and a peripheral expansion of IgA plasmablasts with mucosal homing potential and systemic IgG [101,102]. IL1β, IL4, IL5, IL6, G-CSF, granulocyte-macrophage colony-stimulating factor (GM-CSF), interferon-γ, IL2, IL10, I-12/23, IL13, IL15, IL17A, MCP-1, MIP-1β, MIP-1α, sCD40L, TGFα, TNFα, VEGF A, and IL18 were upregulated in the digestive tissues of rhesus monkeys after SARS-CoV-2 infection [76]. Inflammatory cytokines are induced in more segments of the gastrointestinal tract as the SARS-CoV-2 infection progresses. Subsequently, anti-inflammatory or protective cytokines such as G-CSF, IL4, IL6, IL13, IL18, MIP-1β, and TNFα are increasingly expressed in the gastrointestinal segment [76].

Pulmonary-derived CC chemokine receptor 9 (CCR9)+ CD4+ T cells are increased after viral infection [103]. Effector CD4+ T cells are critical for the development of intestinal mucosal immunity and chronic enteritis, and CCR9 is a chemokine receptor necessary for CD4+ T cell entry into the small intestine [103]. When the intestinal epithelium expresses the C-C motif chemokine ligand 25 (CCL25) [104], it can promote the recruitment of CCR9+CD4+ T cells into the small intestine [105], leading to intestinal immune damage and gastrointestinal symptoms (Figure 6). Additionally, in the early stage of SARS-CoV-2 infection, the expression of CD68 in the duodenum and rectum of rhesus monkeys was significantly increased, and then returned to normal [76]. Increased CD68 expression was mainly located in the duodenum, jejunum, ileum, and descending colon, consistent with the expression of inflammatory cytokines [76].

Figure 6

Gastrointestinal-lung axis in COVID-19. ACE2, angiotensin-converting enzyme 2.

4.2. Immune Response in the Gastrointestinal Tract Affects Lung

The gut–lung axis plays a vital role in the control of SARS-CoV-2 infection. SARS-CoV-2 infects the endothelial cells of blood vessels, and viral particles subsequently infiltrate the bloodstream and circulate throughout the body [106]. Inflammatory cytokines can be detected in the lung during the early stage of gastric infection of rhesus monkeys by SARS-CoV-2, including GM-CSF, IL1β, IL1rα, IL5, IL6, IL12, IL13, IL15, IL17A, IL18, MIP-1α, sCD40L, TGFα, TNF-α, and VEGF [76]. In the late stage of gastric infection with SARS-CoV-2, anti-inflammatory or protective cytokines, including G-CSF, interferon-γ, IL2, IL4, IL10, and MIP-1α, were found to increase in the lung, while inflammatory cytokines such as IL1β, IL1rα, IL5, IL6, IL8, IL15, and IL17A decreased [76]. Thus, cytokines can also enter the lungs through the bloodstream when the intestine is inflamed, thus affecting pulmonary immune responses and inflammation [107].

The microbiome has profound implications for human health and plays a major role in immunity. An increase in circulating pro-inflammatory cytokines also results in changes in the composition of the gut microbiome, leading to increased intestinal permeability, which in turn leads to the translocation of pathogens and toxins, increasing disease severity and multiple organ failure. A dysregulated gut environment combined with epithelial inflammation, in turn, increases ACE2 expression in the gut, and thus pro-inflammatory conditions within the gut microbiome improve the conditions favorable for SARS-CoV-2 infection [108]. There is a positive feedback loop between cytokines and inflammation, which worsens the prognosis of patients with COVID-19.

4.3. The Mechanism Pathogenesis of COVID-19-Associated Gastrointestinal Manifestation

SARS-CoV-2 infection disrupts the tight and adherent junctions of the endothelium and intestinal epithelium, which in turn may lead to leaky gut syndrome as well as local and systemic invasion of normal microbiota members, and immune activation [109]. By activating innate immune cells, IL-1β contributes to the development of a local inflammatory milieu and a systemic cytokine storm. RAS dysregulation may exacerbate ion imbalance and inflammation, potentially affecting cellular metabolic status, microbiota composition, and cell viability, leading to progressive bowel dysfunction and diarrhea [110].

The exact mechanism of nausea, vomiting, anorexia and abdominal pain associated with COVID-19 is unknown. Anorexia is often associated with other gastrointestinal symptoms such as vomiting, abdominal pain, and diarrhea. Abdominal pain combined with other gastrointestinal symptoms, such as anorexia, nausea, or vomiting. When ACE2-mediated SARS-CoV-2 directly invades gastrointestinal epithelial cells, if the immune system cannot defeat the infection, SARS-CoV-2 actively replicates in large numbers, resulting in reduced ACE2 levels and host cell destruction [74,111]. Gastrointestinal function is subsequently disrupted and inflammation is accelerated, causing nausea and vomiting [112]. Acute inflammation increases cytokine load, such as IL-2, IL-7, and TNF, which contribute to the cytokine storm seen in COVID-19. Any viral illness that is a prodrome can cause transient abdominal cramps and discomfort. After entering the gastrointestinal tract, SARS-CoV-2 can exert its cytopathic/inflammatory changes, resulting in visceral pain [113]. Furthermore, a recent study showed that CoV-2 infection of non-neuronal cell types caused anosmia and associated odor perception impairment in COVID-19 patients [114]. An altered sense of taste (dysgeusia) in these patients can further exacerbate anorexia [113,115].

5. Immunization and Prevention via the Gastrointestinal

Cellular and humoral immunity, mediated by T cells and B cells, plays a key role in COVID-19 [116,117,118]. B cell-derived antibodies to the spike protein and its receptor-binding domain prevent viral binding to epithelial cells [116,117]. Additionally, expansion of T follicular helper cells shows a mature humoral immune response that protects memory B cells from possible reinfection [116]. Current commercial vaccines are parenterally administered and primarily target the viral spike protein, a surface protein that undergoes significant antigenic drift. Consequently, adequate protection remains questionable.

5.1. Oral Vaccine Candidates

Current COVID-19 vaccines are designed to be administered by the parenteral intramuscular route and produce high titers of systemic neutralizing antibodies in response to systemic viral infection [119]. There are concerns about the persistence and effectiveness of mucosal immune responses following vaccination. High expression of the SARS-CoV-2 receptor ACE2 was observed in the ileum and colon of enterocytes of the digestive system [120]. While ACE2 was highly concentrated in the oronasal epithelium and the alveoli was lowest [121], it is speculated that the virus is in mucosal sites (oral/nasal) compared to more in-depth areas [122]. Oral vaccines have been successfully used for intestinal and respiratory infections and can effectively induce and activate the common mucosal immune system [119].

Oral vaccines induce strong antigen-specific IgG responses, mucosal IgA responses, and Th1/Th17 responses [123,124,125], thereby reducing or preventing viral infection and replication in the respiratory and intestinal mucosa. The potency and extent of oral vaccine-induced protective immunity can be assessed by monitoring the presence of the bacteria in feces and determining the level of protective antibodies present in the serum [126]. Furthermore, oral vaccines are cost-effective, easy to administer, easy to store, and widely accepted as biofriendly [127,128]. The development and use of oral vaccines against COVID-19 may also achieve broad immune protection in people in remote or underdeveloped countries [129]. Nonetheless, only a few SARS-CoV-2 vaccine candidates have been administered via the mucosal route.

For example, an oral multi-antigen SARS-CoV-2 vaccine, consisting of the receptor-binding domain of the viral spike protein, two domains of the viral nucleocapsid protein, and heat-stable enterotoxin B, can induce humoral, cellular, and mucosal immune responses, and provide immune protection [130]. In addition, the full-length receptor-binding domain of the SARS-CoV-2 spike protein is expressed on the surface of S. cerevisiae, and oral administration of this recombinant yeast induces significant humoral and mucosal responses and robust cellular immune response in mice [131]. Additionally, retrovirus-like particles expressing the SARS-CoV-2 spike and membrane proteins fused to a variable surface protein, modified with the intestinal parasite Giardia, elicited strong cellular and antibody immune responses and complete protection against SARS-CoV-2 in mice and hamsters after oral administration [132].

5.2. Maintain Intestinal Microbiota Homeostasis

There is a lot of evidence that probiotics can play a significant role in strengthening and regulating the immune system against disease [133,134,135]. Such Lactobacillus can act as an antiviral, leading to a symbiotic state in the gut microbiota, which can act as an anti-inflammatory and prevent superinfection [136]. Altered gut microbial composition, characterized by reduced commensal species and increased opportunistic pathogens, has been observed in patients with COVID-19 [137]. When the microbial flora is dysregulated, it is not only associated with intestinal barrier dysfunction, gastrointestinal diseases such as inflammatory bowel disease and colorectal cancer, but also with SARS-CoV-2 infection [138]. For example, SARS-CoV-2 infection has been associated with altered gut microbial communities in patients with elevated Granulicatella spp. and Rothia mucilaginosa found in the oral and gut microbiome [139]. Moreover, the circulating lipopolysaccharide-binding protein levels are elevated in critically ill patients and are associated with circulating inflammatory biomarkers and immune cells [137].

A healthy gut microbiota can control lung infections caused by SARS-CoV-2 by producing large immune cells, and dietary probiotics and prebiotics modulate the gut microbial environment. They may help maintain gut microbiota homeostasis and affect SARS-CoV-2 infection [140]. Recent research reports indicate that COVID-19 patients in the probiotic group experienced the resolution of diarrhea and the resolution of other symptoms; in addition, the estimated risk of respiratory failure, intensive care unit hospitalization, and mortality were significantly lower in the probiotic group [141]. Additionally, multiple clinical trials are underway to evaluate the effects of using probiotics and gut modifiers on the microbiome on COVID-19 [142]. Thus, alleviating gut symptoms and altering or modifying the gut microbial composition and their metabolites may also be a possible beneficial adjunctive therapy for COVID-19 [143,144].

6. Conclusions

Many asymptomatic carriers of COVID-19, so-called silent, presymptomatic or asymptomatic individuals, make this pandemic challenging to control. In a minority of patients with COVID-19, gastrointestinal symptoms such as diarrhea may be present with or precede the development of respiratory symptoms. The infection of the respiratory tract with SARS-CoV-2 affects the microbiome of the gastrointestinal tract; gastrointestinal infection affects the microorganisms and the immune response of the respiratory tract. However, gastrointestinal infections are often overlooked. Therefore, a focus on intestinal symptoms and the alteration or modification of gut microbes or their metabolites in response to COVID-19 may be a useful therapeutic option. In addition, the development of oral SARS-CoV-2 vaccine candidates that induce humoral and mucosal immune responses will likely contribute to controlling the COVID-19 outbreak.