| Literature DB >> 35741123 |
Soomin Lee1, Julip Jung1, Helen Hong1, Bong-Seog Kim2.
Abstract
To predict the two-year recurrence-free survival of patients with non-small cell lung cancer (NSCLC), we propose a prediction model using radiomic features of the inner and outer regions of the tumor. The intratumoral region and the peritumoral regions from the boundary to 3 cm were used to extract the radiomic features based on the intensity, texture, and shape features. Feature selection was performed to identify significant radiomic features to predict two-year recurrence-free survival, and patient classification was performed into recurrence and non-recurrence groups using SVM and random forest classifiers. The probability of two-year recurrence-free survival was estimated with the Kaplan-Meier curve. In the experiment, CT images of 217 non-small-cell lung cancer patients at stages I-IIIA who underwent surgical resection at the Veterans Health Service Medical Center (VHSMC) were used. Regarding the classification performance on whole tumors, the combined radiomic features for intratumoral and peritumoral regions of 6 mm and 9 mm showed improved performance (AUC 0.66, 0.66) compared to T stage and N stage (AUC 0.60), intratumoral (AUC 0.64) and peritumoral 6 mm and 9 mm classifiers (AUC 0.59, 0.62). In the assessment of the classification performance according to the tumor size, combined regions of 21 mm and 3 mm were significant when predicting outcomes compared to other regions of tumors under 3 cm (AUC 0.70) and 3 cm~5 cm (AUC 0.75), respectively. For tumors larger than 5 cm, the combined 3 mm region was significant in predictions compared to the other features (AUC 0.71). Through this experiment, it was confirmed that peritumoral and combined regions showed higher performance than the intratumoral region for tumors less than 5 cm in size and that intratumoral and combined regions showed more stable performance than the peritumoral region in tumors larger than 5 cm.Entities:
Keywords: chest CT; intratumoral; peritumoral; prognosis prediction; radiomic; recurrence-free survival
Year: 2022 PMID: 35741123 PMCID: PMC9221791 DOI: 10.3390/diagnostics12061313
Source DB: PubMed Journal: Diagnostics (Basel) ISSN: 2075-4418
Figure 1Examples of lung tumors with similar appearance between recurrence and non-recurrence. Non-recurrence tumors are in the first row, and recurrence tumors are in the second row.
Figure 2The pipeline of radiomic-based prediction model for 2-year recurrence-free survival prediction.
Figure 3The criteria of patient selection.
Patient characteristics.
| Patient Characteristics | Total | Non-Recurrence | Recurrence | |
|---|---|---|---|---|
|
| 73.14 (62–89) | 72 | 74.3 | |
|
| ||||
| Male | 212 (98%) | 99 | 113 | |
| Female | 5 (2%) | 4 | 1 | |
|
| ||||
| Adenocarcinomas | 89 (41%) | 47 | 42 | |
| Squamous cell carcinomas | 128 (59%) | 56 | 72 | |
| T1 | 90 (41%) | 56 | 34 | |
| T2 | 113 (52%) | 43 | 70 | |
| T3 | 14 (6%) | 4 | 10 | |
| N0 | 122 (56%) | 71 | 51 | |
| N1 | 56 (26%) | 21 | 35 | |
| N2 | 39 (18%) | 11 | 28 | |
1 The T stage and N stage of tumors were determined by the American Joint Committee on Cancer (AJCC) staging system, 6th and 7th editions.
Figure 4Illustration of data preparation. (a) Preprocessing and (b–d) region definitions for CT images.
List of radiomic features used in this study.
| Categories | Sub-Categories | Features |
|---|---|---|
| Intensity | Histogram Statistics (7) | mean, std, min, max, skewness, kurtosis, entropy |
| Histogram Percentile (5) | 5%, 25%, 50%, 75%, 95% | |
| Texture | GLCM features (14) | mean and std dev pairs of ASM, contrast, sum |
| GLRLM features (22) | mean and std dev pairs of short and long run | |
| LBP features (10) | local binary patterns using 10 visual descriptors. | |
| Shape | Size and Roundness (11) | area/perimeter ratio, convex area, eccentricity, |
Classification performance of radiomic features for 2-year recurrence-free survival.
| Classifier | ACC | SEN | SPEC | AUC | Classifier | ACC | SEN | SPEC | AUC | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| T stage and N stage | 58.61 | 68.73 | 47.49 | 0.60 | Intratumoral radiomic | 63.23 | 70.82 | 55.03 | 0.64 | ||
| Peritumoral radiomic features | 3 mm | 61.32 | 67.64 | 54.33 | 0.66 | Combined | 3 mm | 62.68 | 67.16 | 57.65 | 0.65 |
| 6 mm | 57.70 | 65.10 | 49.59 | 0.59 | 6 mm | 60.18 | 68.27 | 51.23 | 0.66 | ||
| 9 mm | 58.60 | 68.04 | 48.14 | 0.62 | 9 mm | 62.78 | 66.64 | 58.65 | 0.66 | ||
| 12 mm | 58.60 | 64.90 | 51.59 | 0.63 | 12 mm | 58.05 | 63.36 | 51.99 | 0.64 | ||
| 15 mm | 57.58 | 59.72 | 55.04 | 0.58 | 15 mm | 58.68 | 64.85 | 51.92 | 0.65 | ||
| 18 mm | 58.09 | 64.94 | 50.36 | 0.61 | 18 mm | 60.78 | 66.63 | 54.40 | 0.65 | ||
| 21 mm | 57.75 | 69.24 | 44.99 | 0.60 | 21 mm | 59.67 | 60.32 | 58.96 | 0.64 | ||
| 24 mm | 58.75 | 67.93 | 48.52 | 0.60 | 24 mm | 61.86 | 66.60 | 56.68 | 0.65 | ||
| 27 mm | 58.06 | 70.98 | 43.76 | 0.60 | 27 mm | 62.43 | 71.48 | 52.47 | 0.64 | ||
| 30 mm | 56.49 | 69.93 | 41.57 | 0.60 | 30 mm | 60.57 | 67.48 | 53.01 | 0.64 | ||
Figure 5ROC curves for each classifier. The blue line curve indicates the mean value of the 5-fold cross-validation results, and the gray band indicates the AUC variance of the 5-fold cross-validation: (a) T and N-stages; (b) Intratumoral radiomic classifier; (c) Peritumoral 3 mm radiomic classifier; (d) Peritumoral 12 mm radiomic classifier; (e) Combined 6 mm radiomic classifier; and (f) Combined 9 mm radiomic classifiers.
Figure 6Kaplan–Meier curves for 2-year recurrence-free survival: (a) Real curve; (b) T stage and N stage; (c) Intratumoral radiomic classifier; (d) Peritumoral 3 mm radiomic classifier; (e) Peritumoral 12 mm radiomic classifier; (f) Combined 6 mm radiomic classifier; (g) Combined 9 mm radiomic classifier.
Details of the patient groups according to the tumor size.
| Group | Tumor Size | Number of Patients (n = 217) | Median Tumor Size (cm) |
|---|---|---|---|
| Group 1 | <3 cm | 88 patients (35/53) | 2.22 cm (±0.48) |
| Group 2 | ≥3 cm and <5 cm | 83 patients (53/30) | 3.77 cm (±0.59) |
| Group 3 | ≥5 cm | 46 patients (26/20) | 6.78 cm (±1.8) |
Classification performance by tumor size group.
| (a) |
| |||||
|
|
|
|
|
| ||
| Intratumoral radiomic features | 53.70 | 39.92 | 59.25 | 0.47 | ||
| Peritumoral | 3 mm | 58.81 | 52.58 | 65.24 | 0.61 | |
| 12 mm | 61.24 | 58.11 | 66.62 | 0.67 | ||
| Combined | 21 mm | 66.2 | 53.94 | 80.78 | 0.70 | |
| 24 mm | 62.02 | 57.12 | 69.98 | 0.67 | ||
| (b) |
| |||||
|
|
|
|
|
| ||
| Intratumoral radiomic features | 75.96 | 85.13 | 49.29 | 0.68 | ||
| Peritumoral | 18 mm | 66.44 | 73.59 | 55.95 | 0.70 | |
| 27 mm | 71.48 | 80.51 | 58.81 | 0.73 | ||
| Combined | 3 mm | 70.43 | 83.14 | 47.81 | 0.75 | |
| 6 mm | 65.11 | 76.88 | 44.43 | 0.72 | ||
| (c) |
| |||||
|
|
|
|
|
| ||
| Intratumoral radiomic features | 63.40 | 82.67 | 42.50 | 0.63 | ||
| Peritumoral | 3 mm | 61.86 | 82.00 | 32.50 | 0.66 | |
| 24 mm | 61.45 | 86.83 | 27.50 | 0.55 | ||
| Combined | 3 mm | 61.73 | 83.67 | 42.50 | 0.71 | |
| 6 mm | 51.30 | 84.33 | 15.00 | 0.64 | ||
Figure 7Appearance of lung tumors according to tumor size groups on CT images: (a) Group 1; (b) Group 2; (c) Group 3.
List of significant radiomic features of intratumoral and peritumoral regions.
|
| |
|
|
|
| Intensity (2) | Histogram 25% Percentile |
| Histogram 5% Percentile | |
| Texture (8) | GLCM Sum Variance |
| GLRLM Long Run Emphasis | |
| GLRLM Long Run High Gray-level Emphasis | |
| GLRLM Long Run Low Gray-level Emphasis | |
| GLRLM Low Gray-level Emphasis (std) | |
| GLRLM Short Run Emphasis (std) | |
| GLRLM Long Run High Gray-level Emphasis (std) | |
| LBP #08 | |
| Shape (3) | Major Axis Length |
| Major-minor Axis Length Ratio | |
| Convex Area | |
|
| |
|
|
|
| Intensity (5) | Histogram 75% Percentile |
| Histogram 95% Percentile | |
| Histogram Std | |
| Histogram Min | |
| Histogram Mean | |
| Texture (4) | GLCM ASM (std) |
| GLRLM Long Run High Gray-level Emphasis | |
| GLRLM Run Percentage (std) | |
| GLRLM Short Run Low Gray-level Emphasis (std) | |
#n means the number of features belongs to each category.