| Literature DB >> 35732787 |
Paulina Wigner1, Angela Dziedzic2, Ewelina Synowiec3, Elzbieta Miller4, Michal Bijak5, Joanna Saluk-Bijak1.
Abstract
Multiple sclerosis (MS) is a neurodegenerative disease characterized by a variable clinical course and diverse pathophysiology, including nitrative and oxidative stresses as well as inflammation. We aimed to detect the potential association between five selected single-nucleotide polymorphisms (SNPs) in genes encoding nitric oxide synthetases as well as antioxidant enzymes and the development of MS in a Polish population. Genomic DNA was isolated from peripheral blood collected from 142 MS patients and 140 controls. Using Taq-Man® probes, we genotyped the following SNPs: rs1879417 in NOS1, and rs2297518 in NOS2 as well as rs4880 in SOD2, rs7943316 in CAT, rs713041 in GPX4. In the case of rs2297518, the C/C genotype and C allele SNP were associated with an enhanced occurrence of MS, while the C/T, T/T genotypes, and T allele of the same polymorphism reduced this risk. Moreover, the C/C homozygote and C allele of the rs4880 SNP reduced MS risk, while the T allele increased the risk. In addition, the A/T heterozygote of rs7943316 polymorphism was associated with an increased risk of MS occurrence. We also detected that the C/C genotype and C allele of rs713041 decreased the risk of MS, whereas the T/T genotype and T allele increased this risk. In conclusion, the results of our study suggest some links between polymorphic variability in the nitrative/oxidative stress-related genes and the risk of MS development in the Polish population.Entities:
Mesh:
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Year: 2022 PMID: 35732787 PMCID: PMC9217808 DOI: 10.1038/s41598-022-14795-6
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.996
Distribution of genotypes and alleles of the g.117803515 C > T—NOS1 (rs1879417), c.1823 C > T (p.Ser608Leu)—NOS2 (rs2297518), c.47 C > T—SOD2 (rs4880), c.-89 A > T—CAT (rs7943316), c.660 T > C—GPX4 (rs713041) and ORs with 95% Cis in patients with MS and healthy volunteers.
| Genotype/allele | Control (n = 140) | MS (n = 142) | Crude OR (95% CI)* | Adjusted OR (95% CI)* | ||||
|---|---|---|---|---|---|---|---|---|
| Number | Frequency | Number | Frequency | |||||
| C/C | 23 | 0.164 | 35 | 0.246 | 1.664 (0.924–2.995) | 0.090 | 1.753 (0.967–3.176) | 0.064 |
| C/T | 78 | 0.557 | 70 | 0.493 | 0.773 (0.484–1.235) | 0.281 | 0.760 (0.474–1.218) | 0.254 |
| T/T | 39 | 0.279 | 37 | 0.261 | 0.913 (0.539–1.545) | 0.733 | 0.895 (0.527–1.521) | 0.683 |
| χ2 = 1.505; | ||||||||
| C | 124 | 0.443 | 140 | 0.493 | 1.238 (0.879–1.743) | 0.221 | 1.270 (0.899–1.795) | 0.175 |
| T | 156 | 0.557 | 144 | 0.507 | 0.808 (0.574–1.137) | 0.221 | 0.787 (0.557–1.112) | 0.175 |
| χ2 = 20.294; | ||||||||
| < | < | |||||||
| T/C | 74 | 0.529 | 83 | 0.585 | 1.255 (0.784–2.009) | 0.345 | 1.240 (0.772–1.991) | 0.374 |
| T/T | 28 | 0.200 | 36 | 0.254 | 1.358 (0.775–2.380) | 0.284 | 1.474 (0.833–2.609) | 0.183 |
| χ2 = 4.250; | ||||||||
| A/A | 24 | 0.171 | 13 | 0.092 | 0.487 (0.237–1.001) | 0.050 | 0.500 (0.242–1.031) | 0.060 |
| T/T | 19 | 0.136 | 11 | 0.077 | 0.535 (0.244–1.170) | 0.117 | 0.508 (0.230–1.119) | 0.093 |
| χ2 = 0.139; p = 0.709 | ||||||||
| A | 145 | 0.518 | 144 | 0.507 | 0.913 (0.565–1.475) | 0.709 | 0.942 (0.581–1.528) | 0.809 |
| T | 135 | 0.482 | 140 | 0.493 | 1.096 (0.678–1.771) | 0.709 | 1.062 (0.654–1.722) | 0.809 |
| T/C | 65 | 0.464 | 72 | 0.507 | 1.187 (0.744–1.894) | 0.473 | 1.215 (0.759–1.947) | 0.417 |
| χ2 = 7.223; | ||||||||
p-values were obtained from logistic regression analyses with the codominant, dominant and recessive models without Bonferroni correction. p < 0.05 along with corresponding ORs are bold and in bold (for the genotypes/alleles contributing to the MS development) or in italics (for the genotypes/alleles with a protective effect); *OR adjusted for gender. Statistical power (1 − β) for significant comparisons is given in superscripts.
Gene–gene interactions of studied oxidative stress-related polymorphisms and MS risk.
| Combined genotype | Control (n = 140) | MS (n = 142) | Crude OR (95% CI)* | Adjusted OR (95% CI)** | ||||
|---|---|---|---|---|---|---|---|---|
| Number | Frequency | Number | Frequency | |||||
| T/T–A/A | 4 | 0.029 | 4 | 0.028 | 0.986 (0.242–4.020) | 0.999 | 1.005 (0.244–0.135) | 0.999 |
| T/T–A/T | 23 | 0.164 | 30 | 0.211 | 1.363 (0.746–2.487) | 0.529 | 1.504 (0.814–2.778) | 0.349 |
| T/T–T/T | 1 | 0.007 | 2 | 0.014 | 1.986 (0.178–22.151) | 0.821 | 1.790 (0.158–20.259) | 0.869 |
| T/C–A/A | 15 | 0.107 | 9 | 0.063 | 0.564 (0.238–1.335) | 0.349 | 0.572 (0.241–1.361) | 0.371 |
| T/C–A/T | 51 | 0.364 | 68 | 0.479 | 1.604 (0.996–2.582) | 0.101 | 1.571 (0.973–2.536) | 0.126 |
| T/C–T/T | 8 | 0.057 | 6 | 0.042 | 0.728 (0.246–2.155) | 0.812 | 0.746 (0.251–2.223) | 0.839 |
| C/C–A/A | 5 | 0.036 | 0 | 0.000 | 0.000 (0.000–+ ∞) | 0.999 | 0.000 (0.000–+ ∞) | 0.999 |
| C/C–A/T | 23 | 0.164 | 20 | 0.141 | 0.834 (0.435–1.599) | 0.827 | 0.791 (0.410–1.526) | 0.734 |
| C/C–T/T | 10 | 0.071 | 3 | 0.021 | 0.281 (0.076–1.042) | 0.113 | 0.249 (0.066–0.936) | 0.078 |
| T/T–T/T | 3 | 0.021 | 5 | 0.035 | 1.667 (0.391–7.111) | 0.740 | 1.710 (0.398–7.358) | 0.720 |
| T/T–T/C | 14 | 0.100 | 19 | 0.134 | 1.390 (0.668–2.896) | 0.614 | 1.510 (90.718–3.174) | 0.2477 |
| T/T–C/C | 11 | 0.079 | 12 | 0.085 | 1.083 (0.461–2.542) | 0.979 | 1.146 (0.485–2.709) | 0.940 |
| T/C–T/T | 12 | 0.086 | 23 | 0.162 | 2.062 (0.982–4.326) | 0.109 | 1.959 (0.929–4.133) | 0.148 |
| T/C–T/C | 34 | 0.243 | 43 | 0.303 | 1.354 (0.800–2.293) | 0.451 | 1.384 (0.814–2.353) | 0.407 |
| T/C–C/C | 28 | 0.200 | 17 | 0.120 | 0.544 (0.283–1.047) | 0.131 | 0.539 (0.279–1.041) | 0.128 |
| C/C–T/T | 3 | 0.021 | 3 | 0.021 | 0.986 (0.196–4.968) | 0.999 | 1.025 (0.201–5.213) | 0.999 |
| C/C–T/C | 17 | 0.121 | 10 | 0.070 | 0.548 (0.242–1.243) | 0.278 | 0.505 (0.220–1.157) | 0.201 |
| C/C–C/C | 18 | 0.129 | 10 | 0.070 | 0.513 (0.228–1.156) | 0.203 | 0.487 (0.215–1.105) | 0.163 |
| T/T–C/C | 6 | 0.043 | 13 | 0.092 | 2.251 (0.830–6.100) | 0.210 | 2.462 (0.900–6.738) | 0.152 |
| T/T–C/T | 11 | 0.079 | 15 | 0.106 | 1.385 (0.613–3.131) | 0.680 | 1.387 (0.611–3.151) | 0.680 |
| T/T–T/T | 11 | 0.079 | 8 | 0.056 | 0.700 (0.273–1.796) | 0.706 | 0.787 (0.303–2.044) | 0.858 |
| T/C–C/C | 12 | 0.086 | 16 | 0.113 | 1.354 (0.616–2.978) | 0.698 | 1.485 (0.669–3.298) | 0.552 |
| T/C–C/T | 44 | 0.314 | 43 | 0.303 | 0.948 (0.572–1.571) | 0.973 | 0.929 (0.558–1.545) | 0.950 |
| T/C–T/T | 18 | 0.129 | 24 | 0.169 | 1.379 (0.711–2.671) | 0.566 | 1.312 (0.673–2.556) | 0.669 |
| C/C–C/C | 5 | 0.036 | 6 | 0.042 | 1.191 (0.355–3.996) | 0.950 | 1.034 (0.303–3.524) | 0.998 |
| C/C–C/T | 23 | 0.164 | 12 | 0.085 | 0.470 (0.224–0.985) | 0.090 | 0.470 (0.223–0.990) | 0.092 |
| C/C–T/T | 10 | 0.071 | 5 | 0.035 | 0.474 (0.158–1.425) | 0.334 | 0.428 (0.141–1.302) | 0.252 |
| T/T–C/C | 14 | 0.100 | 17 | 0.120 | 1.224 (0.579–2.590) | 0.838 | 1.311 (0.615–2.796) | 0.733 |
| T/T–C/T | 10 | 0.071 | 8 | 0.056 | 0.776 (0.297–2.028) | 0.844 | 0.806 (0.307–2.118) | 0.885 |
| T/T–T/T | 4 | 0.029 | 11 | 0.077 | 2.855 (0.887–9.192) | 0.152 | 3.120 (0.960–10.136) | 0.113 |
| T/C–C/T | 21 | 0.150 | 13 | 0.092 | 0.571 (0.274–1.191) | 0.252 | 0.569 (0.272–1.192) | 0.252 |
| C/C–C/C | 9 | 0.064 | 15 | 0.106 | 1.719 (0.726–4.069) | 0.388 | 1.697 (0.713–4.037) | 0.410 |
| C/C–C/T | 17 | 0.121 | 8 | 0.056 | 0.432 (0.180–1.036) | 0.116 | 0.414 (0.171–1.000) | 0.098 |
| C/C–T/T | 12 | 0.086 | 0 | 0.000 | 0.000 (0.000–+ ∞) | 0.999 | 0.000 (0.000–+ ∞) | 0.999 |
| T/T–A/A | 4 | 0.029 | 2 | 0.014 | 0.486 (0.088–2.695) | 0.651 | 0.646 (0.083–2.600) | 0.618 |
| T/T–A/T | 13 | 0.093 | 26 | 0.183 | 2.190 (1.075–4.462) | 0.061 | 2.109 (1.031–4.316) | 0.080 |
| T/T–T/T | 1 | 0.007 | 3 | 0.021 | 3.000 (0.308–29.194) | 0.570 | 3.274 (0.333–32.173) | 0.523 |
| T/C–A/A | 13 | 0.093 | 9 | 0.063 | 0.661 (0.273–1.600) | 0.589 | 0.705 (0.289–1.718) | 0.689 |
| T/C–A/T | 43 | 0.307 | 57 | 0.401 | 1.513 (0.925–2.473) | 0.188 | 1.530 (0.933–2.509) | 0.176 |
| T/C–T/T | 9 | 0.064 | 6 | 0.042 | 0.642 (0.222–1.854) | 0.655 | 0.624 (0.215–1.815) | 0.624 |
| C/C–A/A | 7 | 0.050 | 2 | 0.014 | 0.271 (0.055–1.330) | 0.204 | 0.264 (0.054–1.305) | 0.194 |
| C/C–A/T | 41 | 0.293 | 35 | 0.246 | 0.790 (0.66–1.338) | 0.617 | 0.805 (0.474–1.369) | 0.688 |
| C/C–T/T | 9 | 0.064 | 2 | 0.014 | 0.208 (0.044–0.980) | 0.092 | 0.182 (0.038–0.868) | 0.065 |
| T/T–C/C | 4 | 0.029 | 6 | 0.042 | 1.500 (0.414–5.434) | 0.786 | 1.593 (0.436–5.819) | 0.731 |
| T/T–C/T | 8 | 0.057 | 19 | 0.134 | 2.549 (1.077–6.034) | 0.065 | 1.418 (1.016–5.754) | 0.090 |
| T/T–T/T | 6 | 0.043 | 6 | 0.042 | 0.985 (0.310–3.132) | 0.999 | 0.948 (0.296–3.038) | 0.995 |
| T/C–C/C | 17 | 0.121 | 19 | 0.134 | 1.118 (0.555–2.252) | 0.940 | 1.136 (0.562–2.299) | 0.923 |
| T/C–C/T | 32 | 0.229 | 32 | 0.225 | 0.982 (0.562–1.714) | 0.997 | 0.998 (0.569–1.748) | 0.999 |
| T/C–T/T | 16 | 0.114 | 21 | 0.148 | 1.345 (90.670–2.700) | 0.646 | 1.359 (0.674–2.740) | 0.629 |
| C/C–C/C | 2 | 0.014 | 10 | 0.070 | 5.227 (1.124–24.306) | 0.069 | 5.791 (1.235–27.156) | 0.051 |
| C/C–T/T | 17 | 0.121 | 10 | 0.070 | 0.548 (0.242–1.243) | 0.278 | 0.526 (0.231–1.202) | 0.240 |
| T/T–C/T | 11 | 0.079 | 3 | 0.021 | 0.253 (0.069–0.928) | 0.075 | 0.248 (0.067–0.915) | 0.071 |
| T/T–T/T | 0 | 0.000 | 4 | 0.028 | 4,062,394.411 (0.000–+ ∞) | 0.999 | 5,019,550,116 (0.000–+ ∞) | 0.999 |
| T/C–C/T | 15 | 0.107 | 15 | 0.106 | 0.984 (0.462–2.098) | 0.999 | 0.993 (0.464–2.127) | 0.999 |
| C/C–C/C | 21 | 0.150 | 23 | 0.162 | 1.095 (0.575–2.085) | 0952 | 1.089 (0.570–2.081) | 0.959 |
| C/C–C/T | 22 | 0.157 | 11 | 0.077 | 0.450 (0.210–0.968) | 0.080 | 0.445 (0.206–0.960) | 0.076 |
| C/C–T/T | 14 | 0.100 | 5 | 0.035 | 0.328 (0.115–0.938) | 0.075 | 0.332 (0.116–0.954) | 0.080 |
| C/C–A/A | 8 | 0.057 | 4 | 0.028 | 0.478 (0.141–1.626) | 0.418 | 0.493 (0.144–1.688) | 0.452 |
| 2.139 (1.091–4.193) | 0.053 | |||||||
| C/C–T/T | 0 | 0.000 | 2 | 0.014 | 4,004,360,205 (0.000–+ ∞) | 0.999 | 3,909,419.356 (0.000–+ ∞) | 0.999 |
| C/T–A/A | 8 | 0.057 | 5 | 0.035 | 0.602 (0.192–1.888) | 0.621 | 0.586 (0.186–1.852) | 0.594 |
| C/T–A/T | 58 | 0.414 | 60 | 0.423 | 1.034 (0.644–1.661) | 0.987 | 1.017 (0.632–1.638) | 0.997 |
| C/T–T/T | 12 | 0.086 | 5 | 0.035 | 0.389 (0.133–1.136) | 0.161 | 0.397 (0.136–1.165) | 0.177 |
| T/T–A/A | 8 | 0.057 | 4 | 0.028 | 0.478 (0.141–1.626) | 0.418 | 0.512 (0.150–1.755) | 0.492 |
| T/T–A/T | 24 | 0.171 | 29 | 0.204 | 1.240 (0.681–2.259) | 0.731 | 1.233 (0.675–2.254) | 0.746 |
| T/T–T/T | 7 | 0.050 | 4 | 0.028 | 0.551 (0.158–1.925) | 0.578 | 0.468 (0.133–1.665) | 0.424 |
| C/C–C/C | 17 | 0.121 | 20 | 0.141 | 1.186 (0.593–2.373) | 0.862 | 1.249 (0.620–2.514) | 0.782 |
| C/C–C/T | 5 | 0.036 | 8 | 0.056 | 1.612 (0.514–5.053) | 0.655 | 1.534 (0.486–4.845) | 0.715 |
| C/C–T/T | 1 | 0.007 | 7 | 0.049 | 7.207 (0.875–59.367) | 0.128 | 8.481 (1.021–70.485) | 0.094 |
| T/T–C/T | 19 | 0.136 | 12 | 0.085 | 0.588 (0.274–1.262) | 0.316 | 0.584 (0.271–1.259) | 0.311 |
| C/C–A/A | 14 | 0.100 | 7 | 0.049 | 0.467 (0.182–1.194) | 0.211 | 0.471 (0.183–1.211) | 0.222 |
| C/C–T/T | 0 | 0.000 | 0 | 0.000 | 0.000 (0.000–+ ∞) | 0.999 | 0.000 (0.000–+ ∞) | 0.999 |
| C/T–A/A | 7 | 0.050 | 4 | 0.028 | 0.551 (0.158–1.925) | 0.578 | 0.585 (0.166–2.059) | 0.645 |
| C/T–A/T | 31 | 0.221 | 24 | 0.169 | 0.715 (0.395–1.294) | 0.464 | 0.698 (0.384–1.268) | 0.418 |
| T/T–A/A | 3 | 0.021 | 2 | 0.014 | 0.652 (0.107–3.965) | 0873 | 0.655 (0.107–4.020) | 0.875 |
| T/T–A/T | 20 | 0.143 | 12 | 0.085 | 0.554 (0.260–1.181) | 0.236 | 0.562 (0.262–1.204) | 0.257 |
| T/T–T/T | 9 | 0.064 | 0 | 0.000 | 0.000 (0.000–+ ∞) | 0.999 | 0.000 (0.000–+ ∞) | 0.999 |
p < 0.05 along with corresponding ORs are bold and in bold (for the genotypes/alleles contributing to the MS development) or in italics (for the genotypes/alleles with a protective effect); *denotes p-values with the Bonferroni correction; **OR adjusted for gender. Statistical power (1 − β) for significant comparisons is given in superscripts.
Synergy factor analysis.
| Genes | Genotypes | Synergy factora | Type interactiona | |
|---|---|---|---|---|
| SOD2 × CAT | TT–TT | – | – | – |
| SOD2 × GPX4 | TT–CC | 1.18 | 0.89 | Antagonistic |
| SOD2 × NOS1 | TT–TT | 0.80 | 0.84 | Antagonistic |
| SOD2 × NOS2 | TT–TT | – | – | – |
| GPX4 × CAT | CC–TT | 0.13 | 0.26 | Synergistic |
| GPX4 × NOS1 | CC–TT | 0.18 | 0.16 | Synergistic |
| GPX4 × NOS2 | CC–TT | – | – | – |
| NOS1-CAT | TT–TT | – | – | – |
| NOS2 × CAT | TT–TT | – | – | – |
p < 0.05 s are bold and in bold for the genotypes with a protective effect.
aAll SF relate to the risk of MS. The cited genotypes were treated as risk factors, unless otherwise stated; the terms, ‘risk’ and ‘protective’ factors, refer to associations, i.e. no causality is implied. Note that synergy (antagonism) between risk factors will produce a SF > 1 (< 1), while synergy (antagonism) between protective factors will give a SF < 1 (> 1).
bAll p-values are before correction for multiple testing, whether or not relevant.
Distribution of genotypes and alleles of the g.117803515 C > T—NOS1 (rs1879417), c.1823 C > T (p.Ser608Leu)—NOS2 (rs2297518), c.47 C > T—SOD2 (rs4880), c.-89 A > T—CAT (rs7943316), c.660 T > C—GPX4 (rs713041) and Ors with 95% Cis in men and women with MS.
| Genotype/allele | Men (n = 118) | Women (n = 164) | ||||||
|---|---|---|---|---|---|---|---|---|
| Control (n = 51) | MS (n = 67) | Crude OR (95% CI)* | Control (n = 89) | MS (n = 75) | Crude OR (95% CI)* | |||
| N (freq.) | N (freq.) | N (freq.) | N (freq.) | |||||
| G/G | 6 (0.118) | 14 (0.209) | 1.981 (0.703–5.580) | 0.196 | 17 (0.191) | 21 (0.280) | 1.647 (0.793–3.419) | 0.181 |
| G/A | 27 (0.529) | 37 (0.552) | 1.096 (0.528–2.277) | 0.805 | 51 (0.573) | 33 (0.440) | 0.585 (0.315–1.088) | 0.090 |
| A/A | 18 (0.353) | 16 (0.239) | 0.575 (0.258–1.284) | 0.177 | 21 (0.236) | 21 (0.280) | 1.259 (0.624–2.542) | 0.520 |
| χ2 = 2.786; | χ2 = 0.169; | |||||||
| G | 39 (0.382) | 65 (0.485) | 1.605 (0.913–2.819) | 0.100 | 85 (0.478) | 75 (0.500) | 1.097 (0.706–1.704) | 0.681 |
| A | 63 (0.618) | 69 (0.515) | 0.623 (0.355–1.095) | 0.100 | 93 (0.522) | 75 (0.500) | 0.912 (0.587–1.417) | 0.681 |
| C/C | ||||||||
| C/T | 18 (0.353) | 14 (0.209) | 0.484 (0.213–1.102) | 0.084 | 30 (0.337) | 15 (0.200) | 0.402 (0.240–1.007) | 0.052 |
| T/T | 17 (0.191) | 9 (0.120) | 0.578 (0.241–1.384) | 0.218 | ||||
| χ2 = 17.534; | χ2 = 5.804; | |||||||
| C | ||||||||
| T | < | |||||||
| 16 (0.314) | 15 (0.224) | 0.631 (0.277–1.439) | 0.274 | |||||
| T/C | 27 (0.529) | 41 (0.612) | 1.402 (0.671–2.930) | 0.369 | 47 (0.528) | 42 (0.560) | 1.137 (0.613–2.109) | 0.683 |
| T/T | 8 (0.157) | 11 (0.164) | 1.056 (0.391–2.852) | 0.915 | 20 (0.225) | 25 (0.333) | 1.725 (0.864–3.444) | 0.122 |
| χ2 = 0.663; | χ2 = 5.707; | |||||||
| 59 (0.578) | 71 (0.530) | 0.790 (0.446–1.397) | 0.417 | |||||
| 43 (0.422) | 63 (0.470) | 1.267 (0.716–2.242) | 0.417 | |||||
| A/A | 7 (0.137) | 6 (0.090) | 0.618 (0.194–1.967) | 0.415 | 17 (0.191) | 7 (0.093) | 0.436 (0.170–1.117) | 0.084 |
| 63 (0.708) | 62 (0.827) | 1.968 (0.927–4.177) | 0.078 | |||||
| T/T | 10 (0.196) | 5 (0.075) | 0.331 (0.105–1.038) | 0.058 | 9 (0.101) | 6 (0.080) | 0.773 (0.262–2.281) | 0.641 |
| χ2 = 0.667; | χ2 = 1.021; | |||||||
| A | 48 (0.471) | 68 (0.507) | 1.368 (0.642–2.916) | 0.417 | 97 (0.545) | 76 (0.507) | 0.719 (0.378–1.369) | 0.316 |
| T | 54 (0.529) | 66 (0.493) | 0.713 (0.343–1.558) | 0.417 | 81 (0.455) | 74 (0.493) | 1.390 (0.731–2.644) | 0.316 |
| C/C | 34 (0.382) | 22 (0.293) | 0.671 (0.349–1.294) | 0.234 | ||||
| T/C | 21 (0.412) | 33 (0.493) | 1.387 (0.665–2.892) | 0.384 | 44 (0.494) | 39 (0.520) | 1.108 (0.599–2.049) | 0.744 |
| T/T | 7 (0.137) | 17 (0.254) | 2.137 (0.811–5.632) | 0.124 | 11 (0.124) | 14 (0.187) | 1.627 (0.690–3.837) | 0.266 |
| χ2 = 5.548; | χ2 = 2.052; | |||||||
| C | 112 (0.629) | 83 (0.553) | 0.716 (0.453–1.134) | 0.155 | ||||
| T | 66 (0.371) | 67 (0.447) | 1.396 (0.882–2.209) | 0.155 | ||||
p < 0.05 along with corresponding ORs are bold and in bold (for the genotypes/alleles contributing to the MS development) or in italics (for the genotypes/alleles with a protective effect); *OR adjusted for gender. Statistical power (1 − β) for significant comparisons is given in superscripts.
Characteristics of study participants.
| Characteristics | Controls (n = 140) | MS (n = 142) |
|---|---|---|
| Male | 51 (36%) | 67 (47%) |
| Female | 89 (64%) | 75 (53%) |
| Age (mean ± SD) | 45 ± 12 | 53 ± 14 |
| Underweight (≤ 18.5) | 22.2 ± 2.45 | 19.45 ± 4.67 |
| Normal weight (18.5–24.9) | ||
| Overweight (25–29.9) | ||
| Obesity (≥ 30) | ||
| Mean disease duration (years) | N/A | 14.5 ± 8.1 |
| From normal to mid disability (1.0–4.5) | N/A | 5.5. ± 1.9 |
| From moderate to severe disability (5.0–9.5) | ||
| Death due to MS (10.0) | ||
| Normal (25–30) | N/A | 23.79 ± 6 |
| Mild impairment (21–24) | ||
| Moderate impairment (10–20) | ||
| Severe impairment (≤ 9) | ||
| Normal (≤ 9) | N/A | 10 ± 4 |
| Minimal depressive symptomatology (10–15) | ||
| Mild depression (16–31) | ||
| Moderate depression (32–47) | ||
| Severe depression (≥ 47) | ||
| Normal (0–4) | N/A | 7.5 ± 4.56 |
| Mild depression (5–8) | ||
| Moderate depression (9–11) | ||
| Severe depression (12–15) | ||
N/A not applicable.
Basic information of studied SNPs.
| Gene | Chromosome location | SNPs | SNP ID rs number | Region | Function | MAF in European population |
|---|---|---|---|---|---|---|
| 6 | c.47 C > T (p.Val16Ala) | rs4880 | Exon | This polymorphism causes a substitution of Val to Ala in codon 16 at position 9 and in consequence, leads to functional modulation of protein; the 16Ala variant with α-helical structure shows normal transportation of the enzyme into the mitochondria, while the 16Val-containing precursor, which has a β-sheet conformation has 30–40% reduced enzymatic activity | C: 0.498 | |
| 11 | c.-89 A > T | rs7943316 | 5′ UTR | The T/T genotype of this SNP is associated with a reduction in catalase activity compared to the A/A and A/T genotypes[ | A: 0.349 | |
| 19 | c.660 T > C (p.Leu220 =) | rs713041 | 3′ UTR | This polymorphism causes the change of the amino acid at position 220 from leucine to leucine (p.Leu220) in a region of the | T: 0.452 | |
| 12 | g.117803515 C > T | rs1879417 | Intron | SNPs, which are localised in intron can affect the mRNA/protein splicing process, resulting in the formation of different isoforms of a protein[ | C: 0.459 | |
| 17 | c.1823 C > T (p.Ser608Leu) | rs2297518 | Exon | This polymorphism causes an amino acid substitution from serine to leucine which increases iNOS activity (alters iNOS protein function) and conferees higher NO production based on the A-allele[ | T: 0.198 |
Thermal cycling conditions.
| Thermal cycling conditions | |||
|---|---|---|---|
| Step | Temperature (°C) | Time (s) | Cycle number |
| AmpliTaq Gold® enzyme activation | 95 | 600 | 1 |
| Denaturation | 95 | 15 | 40 |
| Elongation | 60 | 60 | |
Figure 1Allelic discrimination X–Y scatter-plot of the c.47 C > T (p.Val16Ala) SNP (rs4880) of the SOD2. The TaqMan® SNP Genotyping Assay (ID: C_8709053_10) was used for genotyping of this polymorphism. The X-axis represents the relative fluorescent emission for the C allele-specific probe labeled with 6-carboxyfluorescein (FAM), and the Y-axis represents the emission for the T allele-specific probe labeled with 2′-chloro-7′-phenyl-1,4-dichloro-6-carboxyfluorescein (VIC). Circles: homozygous C/C; squares: homozygous T/T; triangles: heterozygous T/C.