Literature DB >> 35697804

Rapid, scalable assessment of SARS-CoV-2 cellular immunity by whole-blood PCR.

Megan Schwarz1,2, Denis Torre1,2, Daniel Lozano-Ojalvo3, Anthony T Tan4, Tommaso Tabaglio5, Slim Mzoughi1,2, Rodrigo Sanchez-Tarjuelo1,6, Nina Le Bert4, Joey Ming Er Lim4, Sandra Hatem1, Kevin Tuballes3, Carmen Camara7, Eduardo Lopez-Granados7, Estela Paz-Artal8,9,10, Rafael Correa-Rocha11, Alberto Ortiz12, Marcos Lopez-Hoyos13, Jose Portoles14, Isabel Cervera6, Maria Gonzalez-Perez6, Irene Bodega-Mayor6, Patricia Conde6, Jesús Oteo-Iglesias6,10, Alberto M Borobia15, Antonio J Carcas15, Jesús Frías15, Cristóbal Belda-Iniesta16, Jessica S Y Ho17, Kemuel Nunez1,2, Saboor Hekmaty1, Kevin Mohammed1, William M Marsiglia1, Juan Manuel Carreño17, Arvin C Dar1,2, Cecilia Berin18, Giuseppe Nicoletti19, Isabella Della Noce19, Lorenzo Colombo19, Cristina Lapucci20, Graziano Santoro20, Maurizio Ferrari21, Kai Nie3,22, Manishkumar Patel3,22, Vanessa Barcessat3, Sacha Gnjatic1,3,22, Jocelyn Harris3,22, Robert Sebra23,24,25,26, Miriam Merad3,22, Florian Krammer17, Seunghee Kim-Schulze3,22, Ivan Marazzi17, Antonio Bertoletti27, Jordi Ochando28,29,30, Ernesto Guccione31,32,33.   

Abstract

Fast, high-throughput methods for measuring the level and duration of protective immune responses to SARS-CoV-2 are needed to anticipate the risk of breakthrough infections. Here we report the development of two quantitative PCR assays for SARS-CoV-2-specific T cell activation. The assays are rapid, internally normalized and probe-based: qTACT requires RNA extraction and dqTACT avoids sample preparation steps. Both assays rely on the quantification of CXCL10 messenger RNA, a chemokine whose expression is strongly correlated with activation of antigen-specific T cells. On restimulation of whole-blood cells with SARS-CoV-2 viral antigens, viral-specific T cells secrete IFN-γ, which stimulates monocytes to produce CXCL10. CXCL10 mRNA can thus serve as a proxy to quantify cellular immunity. Our assays may allow large-scale monitoring of the magnitude and duration of functional T cell immunity to SARS-CoV-2, thus helping to prioritize revaccination strategies in vulnerable populations.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

Entities:  

Year:  2022        PMID: 35697804     DOI: 10.1038/s41587-022-01347-6

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  41 in total

1.  Rapid measurement of SARS-CoV-2 spike T cells in whole blood from vaccinated and naturally infected individuals.

Authors:  Anthony T Tan; Joey Me Lim; Nina Le Bert; Kamini Kunasegaran; Adeline Chia; Martin Dc Qui; Nicole Tan; Wan Ni Chia; Ruklanthi de Alwis; Ding Ying; Jean Xy Sim; Eng Eong Ooi; Lin-Fa Wang; Mark I-Cheng Chen; Barnaby E Young; Li Yang Hsu; Jenny Gh Low; David C Lye; Antonio Bertoletti
Journal:  J Clin Invest       Date:  2021-09-01       Impact factor: 14.808

2.  Risk Factors Associated With Acute Respiratory Distress Syndrome and Death in Patients With Coronavirus Disease 2019 Pneumonia in Wuhan, China.

Authors:  Chaomin Wu; Xiaoyan Chen; Yanping Cai; Jia'an Xia; Xing Zhou; Sha Xu; Hanping Huang; Li Zhang; Xia Zhou; Chunling Du; Yuye Zhang; Juan Song; Sijiao Wang; Yencheng Chao; Zeyong Yang; Jie Xu; Xin Zhou; Dechang Chen; Weining Xiong; Lei Xu; Feng Zhou; Jinjun Jiang; Chunxue Bai; Junhua Zheng; Yuanlin Song
Journal:  JAMA Intern Med       Date:  2020-07-01       Impact factor: 21.873

3.  Cellular and humoral response after MRNA-1273 SARS-CoV-2 vaccine in kidney transplant recipients.

Authors:  David Cucchiari; Natalia Egri; Marta Bodro; Sabina Herrera; Jimena Del Risco-Zevallos; Joaquim Casals-Urquiza; Frederic Cofan; Asunción Moreno; Jordi Rovira; Elisenda Banon-Maneus; Maria J Ramirez-Bajo; Pedro Ventura-Aguiar; Anna Pérez-Olmos; Marta Garcia-Pascual; Mariona Pascal; Anna Vilella; Antoni Trilla; José Ríos; Eduard Palou; Manel Juan; Beatriu Bayés; Fritz Diekmann
Journal:  Am J Transplant       Date:  2021-08-04       Impact factor: 9.369

Review 4.  Adaptive immunity to SARS-CoV-2 and COVID-19.

Authors:  Alessandro Sette; Shane Crotty
Journal:  Cell       Date:  2021-01-12       Impact factor: 41.582

5.  Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection.

Authors:  Jennifer M Dan; Jose Mateus; Yu Kato; Kathryn M Hastie; Esther Dawen Yu; Caterina E Faliti; Alba Grifoni; Sydney I Ramirez; Sonya Haupt; April Frazier; Catherine Nakao; Vamseedhar Rayaprolu; Stephen A Rawlings; Bjoern Peters; Florian Krammer; Viviana Simon; Erica Ollmann Saphire; Davey M Smith; Daniela Weiskopf; Alessandro Sette; Shane Crotty
Journal:  Science       Date:  2021-01-06       Impact factor: 47.728

6.  Correlates of protection against SARS-CoV-2 in rhesus macaques.

Authors:  Katherine McMahan; Jingyou Yu; Noe B Mercado; Carolin Loos; Lisa H Tostanoski; Abishek Chandrashekar; Jinyan Liu; Lauren Peter; Caroline Atyeo; Alex Zhu; Esther A Bondzie; Gabriel Dagotto; Makda S Gebre; Catherine Jacob-Dolan; Zhenfeng Li; Felix Nampanya; Shivani Patel; Laurent Pessaint; Alex Van Ry; Kelvin Blade; Jake Yalley-Ogunro; Mehtap Cabus; Renita Brown; Anthony Cook; Elyse Teow; Hanne Andersen; Mark G Lewis; Douglas A Lauffenburger; Galit Alter; Dan H Barouch
Journal:  Nature       Date:  2020-12-04       Impact factor: 49.962

7.  BNT162b2 mRNA Covid-19 Vaccine in a Nationwide Mass Vaccination Setting.

Authors:  Noa Dagan; Noam Barda; Eldad Kepten; Oren Miron; Shay Perchik; Mark A Katz; Miguel A Hernán; Marc Lipsitch; Ben Reis; Ran D Balicer
Journal:  N Engl J Med       Date:  2021-02-24       Impact factor: 91.245

8.  Pre-existing polymerase-specific T cells expand in abortive seronegative SARS-CoV-2.

Authors:  Mariana O Diniz; Nathalie M Schmidt; Oliver E Amin; Aneesh Chandran; Emily Shaw; Leo Swadling; Corinna Pade; Joseph M Gibbons; Nina Le Bert; Anthony T Tan; Anna Jeffery-Smith; Cedric C S Tan; Christine Y L Tham; Stephanie Kucykowicz; Gloryanne Aidoo-Micah; Joshua Rosenheim; Jessica Davies; Marina Johnson; Melanie P Jensen; George Joy; Laura E McCoy; Ana M Valdes; Benjamin M Chain; David Goldblatt; Daniel M Altmann; Rosemary J Boyton; Charlotte Manisty; Thomas A Treibel; James C Moon; Lucy van Dorp; Francois Balloux; Áine McKnight; Mahdad Noursadeghi; Antonio Bertoletti; Mala K Maini
Journal:  Nature       Date:  2021-11-10       Impact factor: 69.504

9.  Covid-19 in Critically Ill Patients in the Seattle Region - Case Series.

Authors:  Pavan K Bhatraju; Bijan J Ghassemieh; Michelle Nichols; Richard Kim; Keith R Jerome; Arun K Nalla; Alexander L Greninger; Sudhakar Pipavath; Mark M Wurfel; Laura Evans; Patricia A Kritek; T Eoin West; Andrew Luks; Anthony Gerbino; Chris R Dale; Jason D Goldman; Shane O'Mahony; Carmen Mikacenic
Journal:  N Engl J Med       Date:  2020-03-30       Impact factor: 91.245

10.  Robust neutralizing antibodies to SARS-CoV-2 infection persist for months.

Authors:  Ania Wajnberg; Fatima Amanat; Adolfo Firpo; Deena R Altman; Mark J Bailey; Mayce Mansour; Meagan McMahon; Philip Meade; Damodara Rao Mendu; Kimberly Muellers; Daniel Stadlbauer; Kimberly Stone; Shirin Strohmeier; Viviana Simon; Judith Aberg; David L Reich; Florian Krammer; Carlos Cordon-Cardo
Journal:  Science       Date:  2020-10-28       Impact factor: 47.728

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  3 in total

Review 1.  T cell immunity is key to the pandemic endgame: How to measure and monitor it.

Authors:  Megan Schwarz; Slim Mzoughi; Daniel Lozano-Ojalvo; Anthony T Tan; Antonio Bertoletti; Ernesto Guccione
Journal:  Curr Res Immunol       Date:  2022-09-01

2.  Strong SARS-CoV-2 T-Cell Responses after One or Two COVID-19 Vaccine Boosters in Allogeneic Hematopoietic Stem Cell Recipients.

Authors:  Béatrice Clémenceau; Amandine Le Bourgeois; Thierry Guillaume; Marianne Coste-Burel; Pierre Peterlin; Alice Garnier; Maxime Jullien; Jocelyn Ollier; Audrey Grain; Marie C Béné; Patrice Chevallier
Journal:  Cells       Date:  2022-09-27       Impact factor: 7.666

3.  A Rapid and Sensitive Microfluidics-Based Tool for Seroprevalence Immunity Assessment of COVID-19 and Vaccination-Induced Humoral Antibody Response at the Point of Care.

Authors:  Kritika Srinivasan Rajsri; Michael P McRae; Glennon W Simmons; Nicolaos J Christodoulides; Hanover Matz; Helen Dooley; Akiko Koide; Shohei Koide; John T McDevitt
Journal:  Biosensors (Basel)       Date:  2022-08-10
  3 in total

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