| Literature DB >> 35672798 |
Michael F Murray1, Muin J Khoury2, Noura S Abul-Husn3.
Abstract
Changes in medical practice are needed to improve the diagnosis of monogenic forms of selected common diseases. This article seeks to focus attention on the need for universal genetic testing in common diseases for which the recommended clinical management of patients with specific monogenic forms of disease diverges from standard management and has evidence for improved outcomes.We review evidence from genomic screening of large patient cohorts, which has confirmed that important monogenic case identification failures are commonplace in routine clinical care. These case identification failures constitute diagnostic misattributions, where the care of individuals with monogenic disease defaults to the treatment plan offered to those with polygenic or non-genetic forms of the disease.The number of identifiable and actionable monogenic forms of common diseases is increasing with time. Here, we provide six examples of common diseases for which universal genetic test implementation would drive improved care. We examine the evidence to support genetic testing for common diseases, and discuss barriers to widespread implementation. Finally, we propose recommendations for changes to genetic testing and care delivery aimed at reducing diagnostic misattributions, to serve as a starting point for further evaluation and development of evidence-based guidelines for implementation.Entities:
Mesh:
Year: 2022 PMID: 35672798 PMCID: PMC9175445 DOI: 10.1186/s13073-022-01062-6
Source DB: PubMed Journal: Genome Med ISSN: 1756-994X Impact factor: 15.266
Common diseases in which a positive genetic test result is associated with changes to clinical management options for the patient
| Common disease | Genes | Prevalence of “Disease Associated Variants” in general population | Prevalence of “Disease Associated Variants” in specific common disease | Potential targeted interventions associated with monogenic attribution | Guidelines related to diagnosis and/or management of the common disease and its monogenic forms | ||
|---|---|---|---|---|---|---|---|
| Pharmacologic therapy | Non-pharmacologic interventions | Professional organization(s) | Reflexive genetic testing recommended following diagnosis | ||||
| Ovarian cancersa | 1:200 [ | 1:7 [ | Poly ADP ribose polymerase (PARP) inhibitors [ | Bilateral mastectomy [ | National Comprehensive Cancer Network (NCCN) [ American Society of Clinical Oncology (ASCO) [ | Yes | |
| Breast cancer | 1:200 [ | 1:33 [ | PARP inhibitors [ | Contralateral mastectomy Bilateral oophorectomy [ | American Society of Breast Surgeons [ | Yes | |
| Pancreatic cancer | 1:200 [ | 1:10 [ | PARP inhibitors [ | -- | NCCN [ | Yes | |
| Colorectal cancer | 1:280 [ | 1:25 to 1:50 [ | First-line therapy with pembrolizumab in advanced disease [ | Transvaginal ultrasound, endometrial biopsy, hysterectomy [ | Evaluation of Genomic Applications in Practice and Prevention (EGAPP) Working Group [ | Yesc | |
| Coronary artery disease | 1:250 [ | 1:20 [ | Lipid lowering for secondary prevention [combine statins with other lipid-lowering therapies as needed] | -- | 2018 AHA/ACC/AACVPR/AAPA/ABC/ACPM/ADA/AGS/APhA/ASPC/NLA/PCNA Guideline on the Management of Blood Cholesterol [ | Not addressed | |
| Hypertrophic cardiomyopathy | HCM Mimics: [ | 1:200 to 1:400 [ | 1:2 to 1:3 [ | If HCM mimic identified: enzyme replacement therapy ( Antiarrhythmic drugs, ablation ( Transthyretin stabilizing or silencing drugs ( | If HCM mimic identified: ICD implantation ( | American College of Cardiology/American Heart Association Joint Committee on Clinical Practice Guidelines [ | Yes |
a“Ovarian cancers” include ovarian epithelial cancer, fallopian tube cancer, and primary peritoneal cancer - www.cancer.gov/types/ovarian/patient/ovarian-epithelial-treatment-pdq
bWhile the American Society of Breast Surgeons has recommended routine testing, the NCCN has not recommended reflexive testing
cIn 2009, EGAPP noted that there was sufficient evidence to recommend offering genetic testing for Lynch syndrome to individuals with newly diagnosed colorectal cancer to reduce morbidity and mortality in relatives. This group has not revisited this topic since 2009. There is recent evidence for benefit to the patient in the form of FDA-approved targeted therapies [25], and this information was not available to EGAPP when they addressed genetic testing
Implementation changes to consider in specific common diseases where actionable attribution can be revealed with a specific genetic test
| Category | Item number | Recommended for consideration |
|---|---|---|
| Criteria for ordering monogenic tests in the diagnosed patient | Re-evaluation of the risks and benefits of employing genetic testing criteria checklists aimed at limiting who is offered testing to identify monogenic causes of common diseases | |
| Expansion of the ovarian cancer model that prompts reflexive genetic testing for all individuals with a given specific common disease diagnosis | ||
| Reflexive test offerings | Creation and maintenance of a list of common disease diagnoses and the specific reflexive gene tests they prompt by an authoritative group with credibility and standing across the healthcare community | |
| Creation of reflexive genetic testing panels that are designed to offer only those genes supported by clear evidence of clinical actionability for the diagnosed patient | ||
| Pre-test interaction | The association of reflexive genetic test implementation with approaches that assure equitable access in historically underserved populations | |
| Development of a standardized clinical consent process for reflexive genetic tests that can easily be completed by any competent healthcare professional | ||
| Development of best clinical practices that offer reflexive genetic testing in a manner that does not require the involvement of individuals with advanced genetics training or expertise | ||
| Offering reflexive genetic tests to patients with certain specific diagnoses without the expectation or requirement of a detailed family history ascertainment as part of pre-test discussion | ||
| Cost coverage | Re-evaluation of policies and practices that can (or do) result in a denial of coverage for reflexive genetic tests that seek to identify monogenic causes of common disease associated with actionable attribution | |
| Test reporting | Attention to making the actionable results on laboratory reports clear to any competent provider, even a first-time user | |
| Clear communication from the testing laboratory of their plan and commitment to variant re-analysis and results updating so that the non-expert end-user does not need to worry about currently uninterpretable information (i.e., variants of unknown significance) | ||
| Result disclosure | Establishment of a defined standard of care for patients surrounding results on a reflexive genetic test in common disease |