Literature DB >> 35642218

Model Segmentation in Single Particle Tracking.

Boris I Godoy1, Nicholas A Vickers2, Sean B Andersson1,2.   

Abstract

In this paper, we implement and compare two different change detection techniques applied to determining the time points in Single Particle Tracking (SPT) data where the particle changes the dynamic model of motion. The goal is to use this change detection to segment the data in order to estimate the relevant parameters of such models. We consider two well-known statistics commonly used for change detection: the likelihood ratio test (LRT) and the Kullback-Leibler divergence (KLD). We assume that our time-varying system is subject to step-like changes in the parameters that drive the process. The techniques are then applied to experimental data acquired on a microscope under controlled settings to validate our results.

Entities:  

Keywords:  Estimation; Identification and Signal Processing; Modelling; Stochastic Systems

Year:  2021        PMID: 35642218      PMCID: PMC9150762          DOI: 10.1016/j.ifacol.2021.11.197

Source DB:  PubMed          Journal:  Proc IFAC World Congress


  16 in total

1.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  Statistics of camera-based single-particle tracking.

Authors:  Andrew J Berglund
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-07-22

Review 3.  A review of progress in single particle tracking: from methods to biophysical insights.

Authors:  Carlo Manzo; Maria F Garcia-Parajo
Journal:  Rep Prog Phys       Date:  2015-10-29

4.  Method for simultaneous localization and parameter estimation in particle tracking experiments.

Authors:  Trevor T Ashley; Sean B Andersson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-11-05

5.  Localization of a fluorescent source without numerical fitting.

Authors:  Sean B Andersson
Journal:  Opt Express       Date:  2008-11-10       Impact factor: 3.894

Review 6.  Single Particle Tracking: From Theory to Biophysical Applications.

Authors:  Hao Shen; Lawrence J Tauzin; Rashad Baiyasi; Wenxiao Wang; Nicholas Moringo; Bo Shuang; Christy F Landes
Journal:  Chem Rev       Date:  2017-05-18       Impact factor: 60.622

7.  A 2-step algorithm for the estimation of time-varying single particle tracking models using Maximum Likelihood.

Authors:  Boris I Godoy; Ye Lin; Juan C Agüero; Sean B Andersson
Journal:  Asian Control Conf       Date:  2019-07-18
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