Literature DB >> 20866658

Statistics of camera-based single-particle tracking.

Andrew J Berglund1.   

Abstract

Camera-based single-particle tracking enables quantitative determination of transport properties and provides nanoscale information about material characteristics such as viscosity and elasticity. However, static localization noise and the blurring of a particle's position over camera integration times introduce artifacts into measurement results even for a particle executing simple diffusion. Common data analysis methods based on the mean-square displacement do not properly account for these effects. In this paper, we analyze the statistics of tracking data for freely diffusing particles in realistic experimental scenarios. We derive a convenient and asymptotically optimal maximum likelihood estimator for the diffusion coefficient and for the magnitude of localization noise together with the corresponding Fisher information, which bounds the performance of all unbiased estimators. We find that the effect of varying the illumination profile during the camera integration time is quantified by a motion blur coefficient, R . We also find that a double-pulse illumination sequence maximizes the information content in some common experimental scenarios. Our results provide a rigorous theoretical framework and practical experimental recipe for achieving optimal performance in camera-based single-particle tracking.

Mesh:

Substances:

Year:  2010        PMID: 20866658     DOI: 10.1103/PhysRevE.82.011917

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  58 in total

1.  Analytical tools to distinguish the effects of localization error, confinement, and medium elasticity on the velocity autocorrelation function.

Authors:  Stephanie C Weber; Michael A Thompson; W E Moerner; Andrew J Spakowitz; Julie A Theriot
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

Review 2.  Analysis and Interpretation of Superresolution Single-Particle Trajectories.

Authors:  D Holcman; N Hoze; Z Schuss
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

3.  Chromosomal locus tracking with proper accounting of static and dynamic errors.

Authors:  Mikael P Backlund; Ryan Joyner; W E Moerner
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-06-29

Review 4.  Single-particle tracking as a quantitative microscopy-based approach to unravel cell entry mechanisms of viruses and pharmaceutical nanoparticles.

Authors:  Nadia Ruthardt; Don C Lamb; Christoph Bräuchle
Journal:  Mol Ther       Date:  2011-06-07       Impact factor: 11.454

5.  Resolving Cytosolic Diffusive States in Bacteria by Single-Molecule Tracking.

Authors:  Julian Rocha; Jacqueline Corbitt; Ting Yan; Charles Richardson; Andreas Gahlmann
Journal:  Biophys J       Date:  2019-04-09       Impact factor: 4.033

6.  Effect of Pixelation on the Parameter Estimation of Single Molecule Trajectories.

Authors:  Milad R Vahid; Bernard Hanzon; Raimund J Ober
Journal:  IEEE Trans Comput Imaging       Date:  2020-11-23

7.  Unraveling the Thousand Word Picture: An Introduction to Super-Resolution Data Analysis.

Authors:  Antony Lee; Konstantinos Tsekouras; Christopher Calderon; Carlos Bustamante; Steve Pressé
Journal:  Chem Rev       Date:  2017-04-17       Impact factor: 60.622

8.  Variational Algorithms for Analyzing Noisy Multistate Diffusion Trajectories.

Authors:  Martin Lindén; Johan Elf
Journal:  Biophys J       Date:  2018-06-21       Impact factor: 4.033

9.  Errors in Energy Landscapes Measured with Particle Tracking.

Authors:  Michał J Bogdan; Thierry Savin
Journal:  Biophys J       Date:  2018-07-03       Impact factor: 4.033

10.  Improved analysis for determining diffusion coefficients from short, single-molecule trajectories with photoblinking.

Authors:  Bo Shuang; Chad P Byers; Lydia Kisley; Lin-Yung Wang; Julia Zhao; Hiroyuki Morimura; Stephan Link; Christy F Landes
Journal:  Langmuir       Date:  2012-12-20       Impact factor: 3.882

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