Literature DB >> 28520419

Single Particle Tracking: From Theory to Biophysical Applications.

Hao Shen1, Lawrence J Tauzin1, Rashad Baiyasi1, Wenxiao Wang1, Nicholas Moringo1, Bo Shuang1, Christy F Landes1.   

Abstract

After three decades of developments, single particle tracking (SPT) has become a powerful tool to interrogate dynamics in a range of materials including live cells and novel catalytic supports because of its ability to reveal dynamics in the structure-function relationships underlying the heterogeneous nature of such systems. In this review, we summarize the algorithms behind, and practical applications of, SPT. We first cover the theoretical background including particle identification, localization, and trajectory reconstruction. General instrumentation and recent developments to achieve two- and three-dimensional subdiffraction localization and SPT are discussed. We then highlight some applications of SPT to study various biological and synthetic materials systems. Finally, we provide our perspective regarding several directions for future advancements in the theory and application of SPT.

Mesh:

Year:  2017        PMID: 28520419     DOI: 10.1021/acs.chemrev.6b00815

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  64 in total

1.  Single-shot super-resolution total internal reflection fluorescence microscopy.

Authors:  Min Guo; Panagiotis Chandris; John Paul Giannini; Adam J Trexler; Robert Fischer; Jiji Chen; Harshad D Vishwasrao; Ivan Rey-Suarez; Yicong Wu; Xufeng Wu; Clare M Waterman; George H Patterson; Arpita Upadhyaya; Justin W Taraska; Hari Shroff
Journal:  Nat Methods       Date:  2018-05-07       Impact factor: 28.547

2.  Single-Particle Diffusion Characterization by Deep Learning.

Authors:  Naor Granik; Lucien E Weiss; Elias Nehme; Maayan Levin; Michael Chein; Eran Perlson; Yael Roichman; Yoav Shechtman
Journal:  Biophys J       Date:  2019-06-22       Impact factor: 4.033

Review 3.  Coming Together: RNAs and Proteins Assemble under the Single-Molecule Fluorescence Microscope.

Authors:  Ameya P Jalihal; Paul E Lund; Nils G Walter
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

4.  DARC, Glycophorin A, Band 3, and GLUT1 Diffusion in Erythrocytes: Insights into Membrane Complexes.

Authors:  Gayani C Kodippili; Katie Giger; Karson S Putt; Philip S Low
Journal:  Biophys J       Date:  2020-09-23       Impact factor: 4.033

5.  A mechanistic examination of salting out in protein-polymer membrane interactions.

Authors:  Nicholas A Moringo; Logan D C Bishop; Hao Shen; Anastasiia Misiura; Nicole C Carrejo; Rashad Baiyasi; Wenxiao Wang; Fan Ye; Jacob T Robinson; Christy F Landes
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-28       Impact factor: 11.205

Review 6.  Critical Review: digital resolution biomolecular sensing for diagnostics and life science research.

Authors:  Qinglan Huang; Nantao Li; Hanyuan Zhang; Congnyu Che; Fu Sun; Yanyu Xiong; Taylor D Canady; Brian T Cunningham
Journal:  Lab Chip       Date:  2020-07-23       Impact factor: 6.799

7.  Robust model-based analysis of single-particle tracking experiments with Spot-On.

Authors:  Anders S Hansen; Maxime Woringer; Jonathan B Grimm; Luke D Lavis; Robert Tjian; Xavier Darzacq
Journal:  Elife       Date:  2018-01-04       Impact factor: 8.140

8.  Role of Actin Cytoskeleton in Dynamics and Function of the Serotonin1A Receptor.

Authors:  Sandeep Shrivastava; Parijat Sarkar; Pascal Preira; Laurence Salomé; Amitabha Chattopadhyay
Journal:  Biophys J       Date:  2019-09-05       Impact factor: 4.033

9.  Single molecule analysis of lamin dynamics.

Authors:  Leonid A Serebryannyy; David A Ball; Tatiana S Karpova; Tom Misteli
Journal:  Methods       Date:  2018-08-24       Impact factor: 3.608

10.  Short-Wave Infrared Quantum Dots with Compact Sizes as Molecular Probes for Fluorescence Microscopy.

Authors:  Suresh Sarkar; Phuong Le; Junlong Geng; Yang Liu; Zhiyuan Han; Mohammad U Zahid; Duncan Nall; Yeoan Youn; Paul R Selvin; Andrew M Smith
Journal:  J Am Chem Soc       Date:  2020-02-04       Impact factor: 15.419

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