| Literature DB >> 35565261 |
Antonella Petrillo1, Roberta Fusco2, Elio Di Bernardo2, Teresa Petrosino1, Maria Luisa Barretta1, Annamaria Porto1, Vincenza Granata1, Maurizio Di Bonito3, Annarita Fanizzi4, Raffaella Massafra5, Nicole Petruzzellis5, Francesca Arezzo6, Luca Boldrini7, Daniele La Forgia8.
Abstract
PURPOSE: To evaluate radiomics features in order to: differentiate malignant versus benign lesions; predict low versus moderate and high grading; identify positive or negative hormone receptors; and discriminate positive versus negative human epidermal growth factor receptor 2 related to breast cancer.Entities:
Keywords: Contrast-Enhanced Mammography (CEM); Dynamic Contrast Magnetic Resonance Imaging (DCE-MRI); artificial intelligence; radiomics
Year: 2022 PMID: 35565261 PMCID: PMC9102628 DOI: 10.3390/cancers14092132
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.575
Figure 1A graphical representation of the features extraction process in a radiomics context. The green lines represent the segmentation of lesion contours.
Distribution of analyzed patients.
| Characteristic | Distribution | |
|---|---|---|
| Age | Min value | 25 |
| Max value | 82 | |
| Median value | 52 | |
| Tumor nature | benign | 64 |
| malignant | 118 | |
| Tumor grading | G1 | 78 |
| G2 + G3 | 104 | |
| Human epidermal growth factor receptor 2 | HER2+ | 135 |
| HER2− | 47 | |
| Hormone receptor | HR+ | 93 |
| HR− | 89 | |
| Histotype | 0 | 16 |
| 1 | 2 | |
| 2 | 80 | |
| 3 | 19 | |
| 4 | 14 | |
| 5 | 51 | |
Performance results of univariate analysis both on CC and MLO view.
| Performance Results at Univariate Analysis | Benign Versus Malignant Lesions by CC-View | Benign Versus Malignant Lesions by MLO-View | G1 Versus G2 + G3 by CC-View | G1 Versus G2 + G3 by MLO-View | Identification of HER2+ by CC-View | Identification of HER2+ by MLO-View | Identification of HR+ by CC-View | Identification of HR+ by MLO-View |
|---|---|---|---|---|---|---|---|---|
| original_gldm_DependenceNonUniformity | wavelet_LLL_gldm_DependenceNonUniformity | original_glrlm_RunEntropy | wavelet_LLL_glrlm_RunEntropy | wavelet_HLL_glcm_Idn | wavelet_HLH_glcm_Idm | original_gldm_DependenceNonUniformity | wavelet_LLL_gldm_DependenceNonUniformity | |
| AUC | 0.8587 | 0.8406 | 0.8237 | 0.7643 | 0.7150 | 0.7081 | 0.7500 | 0.7334 |
| SENS | 0.9237 | 0.8220 | 0.9038 | 0.7981 | 0.5481 | 0.5704 | 0.9699 | 0.8495 |
| SPEC | 0.8559 | 0.8814 | 0.7692 | 0.7692 | 0.8148 | 0.8148 | 0.6559 | 0.6882 |
| PPV | 0.8651 | 0.8739 | 0.7966 | 0.7757 | 0.7475 | 0.7549 | 0.7355 | 0.7315 |
| NPV | 0.9182 | 0.8320 | 0.8889 | 0.7921 | 0.6433 | 0.6548 | 0.9385 | 0.8205 |
| ACC | 0.8983 | 0.8517 | 0.8365 | 0.7837 | 0.6815 | 0.6926 | 0.8165 | 0.7688 |
| Cut-off | 2.3093 | 4.1147 | 0.8023 | 0.8732 | 0.8866 | 0.7384 | 2.5524 | 4.2121 |
Results for logistic regression with and without LASSO regularization.
| Results for Single Outcome | Logistic Regression | Logistic Regression with LASSO | ||||||
|---|---|---|---|---|---|---|---|---|
| Trainset | Test Set | Trainset | Test Set | |||||
| ACC | ACC | SENS | SPEC | ACC | ACC | SENS | SPEC | |
| CC—Tumor nature | 0.9583 | 0.9583 | 1.0000 | 0.9286 | 0.9167 | 0.9167 | 0.9000 | 0.9286 |
| MLO—Tumor nature | 0.7500 | 0.7500 | 0.8333 | 0.6667 | 0.8750 | 0.8750 | 1.0000 | 0.7500 |
| CC—Grading | 0.8333 | 0.8333 | 0.8571 | 0.8000 | 0.7917 | 0.7917 | 0.9286 | 0.6000 |
| MLO—Grading | 0.7083 | 0.7083 | 0.8462 | 0.5455 | 0.7917 | 0.7917 | 0.7692 | 0.8182 |
| CC—HER2 | 0.7143 | 0.7143 | 0.7778 | 0.6000 | 0.7857 | 0.7857 | 1.0000 | 0.4000 |
| MLO—HER2 | 0.6786 | 0.6786 | 0.5333 | 0.8462 | 0.8214 | 0.8214 | 0.8000 | 0.8462 |
| CC—HR | 0.8500 | 0.8500 | 0.8182 | 0.8889 | 0.8500 | 0.8500 | 0.7273 | 1.0000 |
| MLO—HR | 0.7500 | 0.7500 | 0.7500 | 0.7500 | 0.7000 | 0.7000 | 0.5000 | 1.0000 |
Results for CART and RF methods.
| Results for Single Outcome | CART | Random Forest | ||||||
|---|---|---|---|---|---|---|---|---|
| Trainset | Test Set | Trainset | Test Set | |||||
| ACC | ACC | SENS | SPEC | ACC | ACC | SENS | SPEC | |
| CC—Tumor nature | 0.9122 | 0.9167 | 0.9000 | 0.9286 | 0.9259 | 0. 9167 | 0.9000 | 0.9286 |
| MLO—Tumor nature | 0.8825 | 0.8333 | 1.0000 | 0.6667 | 0.8968 | 0.8750 | 1.0000 | 0.7500 |
| CC—Grading | 0.8073 | 0.9167 | 0.9286 | 0.9000 | 0.8265 | 0.8750 | 0.9286 | 0.8000 |
| MLO—Grading | 0.7660 | 0.8333 | 0.8462 | 0.8182 | 0.8021 | 0.8750 | 0.9231 | 0.8182 |
| CC—HER2 | 0.6992 | 0.6071 | 0.4444 | 0.9000 | 0.7463 | 0.7143 | 0.6111 | 0.9000 |
| MLO—HER2 | 0.7084 | 0.8214 | 0.8667 | 0.7692 | 0.8289 | 0.8929 | 0.8667 | 0.9231 |
| CC—HR | 0.8045 | 0.8000 | 0.6364 | 1.0000 | 0.8125 | 0.8500 | 0.7273 | 1.0000 |
| MLO—HR | 0.7331 | 0.7000 | 0.5000 | 1.0000 | 0.7756 | 0.8000 | 0.6667 | 1.0000 |
Examples of results for logistic regression methods run using all possible combinations of two predictors.
| Results for Single Outcome | ACC | SENS | SPEC | Var 1 | Var 2 |
|---|---|---|---|---|---|
| CC—Tumor nature | 0.9583 | 1.0000 | 0.9286 | original_gldm_SmallDependenceEmphasis | original_firstorder_TotalEnergy |
| MLO—Tumor nature | 0.9167 | 1.0000 | 0.8333 | original_gldm_LargeDependenceHighGrayLevelEmphasis | wavelet_LHL_glcm_MaximumProbability |
| CC—Grading | 0.9167 | 0.9286 | 0.9000 | original_gldm_SmallDependenceEmphasis | wavelet_HLL_firstorder_Energy |
| MLO—Grading | 0.9167 | 1.0000 | 0.8182 | original_glrlm_RunPercentage | original_glszm_LargeAreaLowGrayLevelEmphasis |
| CC—HR | 0.9000 | 0.8182 | 1.0000 | original_glcm_InverseVariance | original_glcm_DifferenceVariance |
| MLO—HR | 0.9500 | 0.9167 | 1.0000 | original_firstorder_Maximum | wavelet_LHL_glrlm_RunPercentage |
Figure 2Decisional chart for the prediction of tumor nature from CC images.
Figure 3Error evolution during the training procedure of the RF method for the prediction of tumor nature from CC images.
Figure 4The decision chart and error evolution for the prediction of grading from MLO images.