| Literature DB >> 35514837 |
Satoko Hayashi1, Taro Nishide1, Waro Nakanishi1.
Abstract
The intrinsic dynamic and static nature of intramolecular OH-*-π interactions is elucidated using a QTAIM dual functional analysis (QTAIM-DFA) after clarifying the structural features. Asterisks (*) are employed to emphasize the presence of bond critical points (BCPs) on the bond paths (BPs), which correspond to the interactions in question. Data from the fully optimized structures correspond to the static nature of the interactions. In our treatment, data from the perturbed structures, which are based around the fully optimized structure, are employed for the analysis in addition to those from the fully optimized structure, which represent the dynamic nature of the interaction. Seven intramolecular OH-*-C(π) interactions were detected in six-membered rings, with six BPs and BCPs for each, among the 72 conformers of the species examined here (1-15). The interactions are predicted to have a vdW or t-HBnc (typical hydrogen bonds with no covalency) nature, which appeared in the pure closed shell region. They appear to be stronger than the corresponding intermolecular interactions. Nine BPs with BCPs were also detected for the intramolecular O-*-X interactions (X = C(π) and H(π), joined to C(π)) in the 5-7-membered rings. The E(2) values of the interactions, as obtained by NBO, are discussed in relation to the stabilities of the conformers and the BPs with BCPs. This journal is © The Royal Society of Chemistry.Entities:
Year: 2019 PMID: 35514837 PMCID: PMC9064312 DOI: 10.1039/c9ra01788g
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
Chart 1Candidates 1–15, to examine the intramolecular HB interactions.
Fig. 4Plots of Hb(c) versus Hb(c) – Vb(c)/2 for the intramolecular interactions around the OH group in 3a, 3b, 5e, 5i, 6a, 6c, 9a, 9b, 11a, 12a, 12b, 13a, 14b, 15a, 15b and 15c, as evaluated with MP2/BSS-A. The perturbed structures are generated with a CIV.
Fig. 1Survey of the structural optimizations for 3 and 5, with MP2/BSS-A.
Fig. 3Molecular graphs for the 16 conformers of 3a, 6a, 9a, 11a, 12a, 13a, 15a, 3b, 5e, 5i, 6c, 9b, 12b, 14b, 15b and 15c calculated with MP2/BSS-A (shown by (a)–(p), respectively, in the figure), where BPs with BCP corresponding to the intramolecular non-covalent interactions around the OH group are detected. The BCPs are denoted by red dots, RCPs (ring critical points) are indicated by yellow dots and BPs are indicated by pink lines. The carbon, hydrogen and oxygen atoms are shown in black, grey and red, respectively. Contour plots are drawn on the planes containing the intramolecular interaction for each. The contours (eao−3) are at 2 (l = ±8, ±7 … and 0).
Fig. 2Plot of ΔEZPversus ΔEES for the conformers in 3, as optimized with MP2/BSS-A.
QTAIM functions and QTAIM-DFA parameters for the intramolecular interactions around the O–H group, as elucidated with MP2/BSS-A and predicted using the predicted nature for the interactionsa,b
| A–*–B(π), Compound |
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| Predicted nature |
|---|---|---|---|---|---|---|---|---|---|---|
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| OH–*–αC(π) in 3a | 0.0161 | 0.0063 | 0.0015 | −0.870 | 0.0065 | 77.0 | 7.81 | 97.7 | 335 | p-CS/t-HBnc |
| OH–*–αC(π) in 6a | 0.0162 | 0.0059 | 0.0010 | −0.909 | 0.0059 | 80.5 | 8.02 | 99.2 | 387 | p-CS/t-HBnc |
| OH–*–iC(π) in 9a | 0.0155 | 0.0061 | 0.0011 | −0.898 | 0.0062 | 79.5 | 7.46 | 101.8 | 288 | p-CS/t-HBnc |
| OH–*–αC(π) in 11a | 0.0117 | 0.0048 | 0.0011 | −0.867 | 0.0050 | 76.8 | 14.93 | 79.3 | 56.2 | p-CS/vdW |
| OH–*–βC(π) in 12a | 0.0170 | 0.0072 | 0.0014 | −0.888 | 0.0073 | 78.6 | 5.85 | 101.8 | 236 | p-CS/t-HBnc |
| OH–*–αC(π) in 13a | 0.0178 | 0.0064 | 0.0011 | −0.907 | 0.0065 | 80.3 | 7.58 | 115.9 | 420 | p-CS/t-HBnc |
| OH–*–iC(π) in 15a | 0.0135 | 0.0053 | 0.0009 | −0.901 | 0.0054 | 79.8 | 12.45 | 94.0 | 193 | p-CS/t-HBnc |
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| O–*–αC(π) in 3b | 0.0125 | 0.0054 | 0.0011 | −0.887 | 0.0055 | 78.5 | 7.31 | 49.7 | 5035 | p-CS/vdW |
| O–*–αC(π) in 6c | 0.0098 | 0.0047 | 0.0011 | −0.863 | 0.0049 | 76.4 | 7.48 | 107.2 | 7373 | p-CS/t-HBnc |
| O–*–iC(π) in 9b | 0.0108 | 0.0047 | 0.0009 | −0.897 | 0.0048 | 79.4 | 9.14 | 90.8 | 85.0 | p-CS/t-HBnc |
| O–*– | 0.0108 | 0.0060 | 0.0019 | −0.807 | 0.0063 | 72.0 | 4.79 | 86.1 | 1631 | p-CS/vdW |
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| O–*–βH(π) in 5e | 0.0107 | 0.0051 | 0.0012 | −0.867 | 0.0052 | 76.8 | 12.74 | 86.3 | 266 | p-CS/vdW |
| O–*–βH(π) in 5i | 0.0102 | 0.0049 | 0.0012 | −0.862 | 0.0050 | 76.3 | 15.97 | 88.5 | 577 | p-CS/vdW |
| O–*–βH(π) in 12b | 0.0164 | 0.0086 | 0.0026 | −0.822 | 0.0090 | 73.2 | 4.43 | 73.4 | 19.8 | p-CS/vdW |
| O–*– | 0.0129 | 0.0056 | 0.0012 | −0.877 | 0.0057 | 77.7 | 13.09 | 77.9 | 0.4 | p-CS/vdW |
| O–*– | 0.0112 | 0.0047 | 0.0010 | −0.883 | 0.0048 | 78.2 | 16.49 | 79.9 | 24.3 | p-CS/vdW |
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| OH–*–αC(π) in 3a | 0.0147 | 0.0061 | 0.0018 | −0.832 | 0.0063 | 73.9 | 7.95 | 82.7 | 185 | p-CS/vdW |
| OH–*–αC(π) in 3a | 0.0132 | 0.0050 | 0.0016 | −0.813 | 0.0053 | 72.5 | 9.68 | 81.0 | 199 | p-CS/vdW |
Data are collected for the conformers, where the intramolecular non-covalent interactions around the OH group are detected. Fig. 3 illustrates the molecular graphs with contour plots drawn on the optimized structures for the conformers shown in this table, while those other than the ones above are presented in Fig. S3–S5 of the ESI.
MP2/6-311+G(3df,3pd) for MP2/BSS-A.
∇2ρb(c) = Hb(c) – Vb(c)/2, where c = ħ2/8m.
k b(c) = Vb(c)/Gb(c).
R = (x2 + y2)1/2, where (x, y) = (Hb(c) – Vb(c)/2, Hb(c)).
θ = 90° – tan−1 (y/x).
Defined in eqn (3) in the text.
θ p = 90° – tan−1 (dy/dx).
κ p = |d2y/dx2|/[1 + (dy/dx)2]3/2.
Data from w = ±0.0125, ±0.025 were employed for the evaluation.
Data from w = −0.0625, −0.050, −0.0375, −0.025, −0.0125 are employed for the evaluation.
H(π) bonded directly to C(π).
Calculated with M06-2X/BSS-A (r(H⋯C(π)) = 2.3277 Å versus 2.2797 Å (MP2)).
Calculated with B3LYP/BSS-A (r(H⋯C(π)) = 2.3782 Å versus 2.2797 Å (MP2)).
Results of the NBO analysis with NBO 3.0 for the intramolecular interactions around the OH group, as evaluated with MP2/BSS-A
| Species |
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| F(i,j) |
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|---|---|---|---|---|
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| 3a | 10.0 | 1.14 | 0.047 | 2.2797 |
| 5a | 4.8 | 1.09 | 0.032 | 2.4802 |
| 5b | 3.7 | 1.10 | 0.028 | 2.6111 |
| 6a | 13.8 | 1.11 | 0.054 | 2.3020 |
| 8a | 2.7 | 1.02 | 0.025 | 2.5218 |
| 9a | 7.2 | 1.05 | 0.042 | 2.3316 |
| 10a | 4.5 | 1.52 | 0.036 | 2.2584 |
| 11a | 2.1 | 1.13 | 0.021 | 2.4507 |
| 12a | 11.6 | 1.08 | 0.049 | 2.4139 |
| 13a | 20.1 | 1.09 | 0.065 | 2.2783 |
| 14a | 8.9 | 1.00 | 0.045 | 2.3601 |
| 15a | 4.4 | 1.05 | 0.032 | 2.3869 |
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| 10a | 3.6 | 1.27 | 0.029 | 2.2584 |
| 15b | 2.1 | 1.47 | 0.027 | 4.1125 |
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| 1a | 5.7 | 0.82 | 0.030 | 2.5155 |
| 3b | 2.3 | 0.79 | 0.018 | 2.4272 |
| 4a | 6.9 | 0.72 | 0.031 | 2.5383 |
| 4c | 5.4 | 0.73 | 0.027 | 2.6315 |
| 6a | 2.3 | 0.70 | 0.017 | 2.3020 |
| 6b | 3.7 | 0.73 | 0.023 | 3.4771 |
| 6c | 3.8 | 0.73 | 0.023 | 3.5116 |
| 7a | 3.7 | 0.67 | 0.024 | 2.5311 |
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| 15c | 2.3 | 1.34 | 0.024 | 4.2452 |
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| 10b | 3.5 | 1.18 | 0.028 | 3.6982 |
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| 12b | 3.3 | 1.59 | 0.032 | 3.8536 |
| 15b | 19.3 | 7.82 | 0.170 | 4.1125 |
Second order perturbation energy given by eqn (8).
The diagonal elements (orbital energies).
The off-diagonal NBO Fock matrix element.
2.4027 Å for r(O⋯C(π)).
2.9757 Å for r(O⋯C(π)).
2.4170 Å for r(O⋯C(π)).
2.4305 Å for r(O⋯C(π)).
3.0039 Å for r(O⋯C(π)).
3.0044 Å for r(O⋯C(π)).
2.9581 Å for r(O⋯C(π)).
3.0080 Å for r(O⋯C(π)).
2.4484 Å for r(HO⋯H).
2.74345 Å for r(O⋯C(π)).
2.2155 Å for r(HO⋯H).
2.3578 Å for r(HO⋯H).
Fig. 5Plots of E(2) and ΔEES(b/a) for x = 3, 6, 9, 11–13 and 15 in red and blue, respectively. Molecular graphs for a are shown, where BCP with BPs corresponding to the intramolecular OH–*–C(π), O–*–C(π), or O–*–H(π) interactions are given for each. Molecular graphs other than a are drawn in Fig. S3–S5 of the ESI.†