| Literature DB >> 30094124 |
Taro Nishide1, Satoko Hayashi1, Waro Nakanishi1.
Abstract
The dynamic and static nature of various neutral hydrogen bonds (nHBs) is elucidated with quantum theory of atoms-in-molecules dual functional analysis (QTAIM-DFA). The perturbed structures generated by using the coordinates derived from the compliance force constants (Cij ) of internal vibrations are employed for QTAIM-DFA. The method is called CIV. The dynamic nature of CIV is described as the "intrinsic dynamic nature", as the coordinates are invariant to the choice of the coordinate system. nHBs are, for example, predicted to be van der Waals (H2Se-✶-HSeH; ✶=bond critical point), t-HBnc (typical-HBs with no covalency: HI-✶-HI), t-HBwc (t-HBs with covalency: H2C=O-✶-HI), CT-MC [molecular complex formation through charge transfer (CT): H2C=O-✶-HF], and CT-TBP (trigonal bipyramidal adduct formation through CT: H3N-✶-HI) in nature. The results with CIV were the same as those with POM in the calculation errors, for which the perturbed structures were generated by partial optimization, and the interaction distances in question were fixed suitably in POM. The highly excellent applicability of CIV for QTAIM-DFA was demonstrated for the various nHBs, as well as for the standard interactions previously reported. The stability of the HBs, evaluated by ΔE, is well correlated with Cij (ΔE×Cij =constant value of -165.64), and the QTAIM parameters, although a few deviations were detected.Entities:
Keywords: ab initio calculations; atoms-in-molecules dual functional analysis (QTAIM-DFA); compliance force constants; dynamics; hydrogen bonds
Year: 2018 PMID: 30094124 PMCID: PMC6077874 DOI: 10.1002/open.201800051
Source DB: PubMed Journal: ChemistryOpen ISSN: 2191-1363 Impact factor: 2.911
Figure 2Plots of H b( c) versus H b( c)−V b( c)/2 for 1–29, for which data from the perturbed structures generated with CIV were employed, in addition to the data from the optimized structures. Definitions of (R, θ) and (θ p, κ p) are illustrated, as exemplified by H3N−✶−HI (26: C 3).
QTAIM functions and QTAIM‐DFA parameters evaluated for the neutral hydrogen bonds (nHBs) in 1–29 by applying the QTAIM dual functional analysis by employing the perturbed structures generated with CIV, NIV, and POM.[a,b]
| Species (X−✶−Y) |
|
|
|
|
|
|
|
|
|---|---|---|---|---|---|---|---|---|
| H2Se−✶−HSeH ( | 0.0026 | 0.0006 | −0.858 | 0.0027 |
| 23.4 | 88.1 | 194 |
| H2S−✶−HSH ( | 0.0032 | 0.0008 | −0.861 | 0.0033 | 76.3 | 19.2 | 91.8 | 229 |
| H3N−✶−HNH2 ( | 0.0059 | 0.0016 | −0.844 | 0.0062 | 74.9 | 12.1 | 87.5 | 188 |
| H2O−✶−HOH ( | 0.0106 | 0.0005 | −0.976 | 0.0107 | 87.3 | 6.4 | 123.7 | 159 |
| H3N−✶−HOH ( | 0.0094 | −0.0020 | −1.096 | 0.0096 |
| 5.5 | 157.3 | 87.3 |
| HI−✶−HI ( | 0.0034 | 0.0004 | −0.945 | 0.0034 | 84.1 | 13.8 | 102.6 | 304 |
| HBr−✶−HBr ( | 0.0038 | 0.0010 | −0.853 | 0.0039 | 75.6 | 17.9 | 91.4 | 269 |
| HCl−✶−HCl ( | 0.0049 | 0.0015 | −0.828 | 0.0052 |
| 16.1 | 95.0 | 294 |
| HF−✶−HF ( | 0.0125 | −0.0002 | −1.007 | 0.0125 | 90.8 | 5.9 | 128.2 | 107 |
| H2Se−✶−HI ( | 0.0040 | 0.0001 | −0.986 | 0.0040 | 88.5 | 12.7 |
| 464 |
| H2Se−✶−HBr ( | 0.0040 | 0.0002 | −0.978 | 0.0040 | 87.6 | 13.0 |
| 488 |
| H2Se−✶−HCl ( | 0.0044 | 0.0001 | −0.989 | 0.0044 | 88.7 | 11.2 |
| 431 |
| H2Se−✶−HF ( | 0.0051 | −0.0013 | −1.113 | 0.0053 |
| 7.3 | 164.5 | 146 |
| H2S−✶−HI ( | 0.0043 | 0.0001 | −0.991 | 0.0043 | 89.0 | 13.4 | 124.5 | 334 |
| H2S−✶−HBr ( | 0.0047 | −0.0001 | −1.010 | 0.0047 | 91.1 | 12.0 | 133.9 | 309 |
| H2S−✶−HCl ( | 0.0051 | −0.0002 | −1.024 | 0.0051 | 92.8 | 10.3 | 140.5 | 269 |
| H2S−✶−HF ( | 0.0061 | −0.0020 | −1.143 | 0.0064 |
| 6.6 | 165.1 | 120 |
| H2O−✶−HI ( | 0.0091 | 0.0009 | −0.949 | 0.0091 | 84.5 | 10.1 | 113.6 | 217 |
| H2O−✶−HBr ( | 0.0103 | −0.0006 | −1.028 | 0.0103 | 93.2 | 8.2 | 138.6 | 182 |
| H2O−✶−HCl ( | 0.0112 | −0.0018 | −1.072 | 0.0114 | 98.9 | 6.4 | 149.9 | 116 |
| H2O−✶−HF ( | 0.0131 | −0.0089 | −1.252 | 0.0158 | 124.0 | 3.4 | 166.1 | 6.9 |
| H2C=O−✶−HI ( | 0.0102 | −0.0009 | −1.044 | 0.0103 | 95.3 | 9.7 | 139.7 | 216 |
| H2C=O−✶−HBr ( | 0.0108 | −0.0022 | −1.093 | 0.0111 |
| 8.2 | 154.4 | 138 |
| H2C=O−✶−HCl ( | 0.0115 | −0.0032 | −1.122 | 0.0119 |
| 6.6 | 160.4 | 92.0 |
| H2C=O−✶−HF ( | 0.0127 | −0.0099 | −1.279 | 0.0161 | 127.8 | 3.5 | 170.1 | 6.7 |
| H3N−✶−HI ( | 0.0050 | −0.0268 | −1.728 | 0.0272 | 169.4 | 19.8 | 194.1 | 4.2 |
| H3N−✶−HBr ( | 0.0069 | −0.0189 | −1.579 | 0.0201 | 160.0 | 7.9 | 190.3 | 6.4 |
| H3N−✶−HCl ( | 0.0080 | −0.0155 | −1.492 | 0.0174 | 152.7 | 5.5 | 186.9 | 9.3 |
| H3N−✶−HF ( | 0.0085 | −0.0195 | −1.533 | 0.0213 | 156.4 | 2.8 | 182.0 | 2.8 |
[a] The functions and parameters were evaluated at the BCPs of the nHBs in the fully optimized structures. [b] With MP2/6–311++G(3df,3pd), except for I, for which calculations were performed with (7433111/743111/7411/2+1s1p1d1f) from the Sapporo Basis Set Factory, which is called MP2/BSS‐A. [c] c∇2 ρ b( c)=H b( c)−V b( c)/2, for which c=ħ2/8 m. [d] k b( c)=V b( c)/G b( c). [e] Defined in Equation (3). [f] Minor values that do not satisfy the characterization from the major ones are shown in italics. [g] Internal vibrational frequency corresponding to the interaction. [h] Force constant corresponding to the frequency. [i] From the components. [j] The nature of r‐CS/CT‐MC was predicted with NIV. [k] On the borderline area between r‐CS/t‐HBwc and r‐CS/CT‐MC if evaluated with CIV and POM.
Correlations in 1–29, evaluated with NIV, POM, and CIV, under the MP2/BSS‐A conditions.[a]
| Entry | Correlation |
|
|
|
|
|---|---|---|---|---|---|
| 1 | Δ | 0.371 | −6.83 | 0.960 | 4 |
| 2 | Δ | 0.468 | −5.13 | 0.997 | 4 |
| 3 | Δ | 0.751 | −7.39 | 0.996 | 4 |
| 4 | Δ | 1.200 | −8.72 | 0.9997 | 4 |
| 5 |
| 0.988 | 1.71 | 0.994 | 29 |
| 6 |
| 0.992 | 1.02 | 0.999 | 27[b] |
| 7 |
| 1.001 | −0.15 | 0.99997 | 29 |
| 8 |
| 0.980 | −0.31 | 0.994 | 29 |
| 9 |
| 1.009 | −0.42 | 0.998 | 29 |
| 10 | Δ | −2012.0 | −3.83 | 0.866 | 27[c] |
| 11 | Δ | −0.479 | 25.70 | 0.891 | 27[c] |
| 12 |
| 2.390 | −86.95 | 0.957 | 23[d] |
| 13 | Δ | −0.314 | 19.69 | 0.971 | 8[e] |
| 14 | Δ | −0.219 | 14.01 | 0.957 | 8[f] |
| 15 | Δ | −0.155 | −0.05 | 0.838 | 6[g] |
| 16 | Δ | 1.994 | −414.66 | 0.898 | 4[h] |
[a] Analyzed by assuming the linear correlation y=ax+b (R c 2: square of correlation coefficient). [b] For 1–29, except for 4 and 18. [c] For 1–29, except for 26 and 27. [d] For 1–29, except for 21, 24, and 25–29. [e] For 1–9, except for 3. [f] For 10–17. [g] For 18–25, except for 21 and 25. [h] For 24–29.
Figure 1Molecular graphs, with contour plots of ρ(r) for a) HI−✶−HI (6), b) H2Se−✶−HI (10), c) H2S−✶−HI (14), d) H2O−✶−HI (18), e) H2C=O−✶−HI (22), and f) H3N−✶−HI (26).
Figure 3Plots of a) θ p:NIV versus θ p:CIV and b) θ p:POM versus θ p:CIV.
Figure 4Plots of a) κ p:NIV versus κ p:CIV and b) κ p:POM versus κ p:CIV.
The predicted nature of the nHBs in B−✶−HX with the (θ, θ p) values, for which B=H2Se, H2S, H2O, H2C=O, and H3N with HX=HI, HBr, HCl, and HF.[a–c]
| HX | B=H2Se | H2S | H2O | H2C=O | H3N | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| ( | nature | ( | nature | ( | nature | ( | nature | ( | nature | |
| HI | ( |
| ( |
| ( |
| (95.3, |
| (164.9, | CT‐TBP |
| HBr | ( |
| ( |
| ( |
| ( | CT‐MC | (160.0, | CT‐TBP |
| HCl | ( |
| ( |
| (98.9, |
| ( | CT‐MC | (152.7, | CT‐TBP |
| HF | ( | CT‐MC | ( | CT‐MC | (124.0, | CT‐MC | (127.8, | CT‐MC | (156.4, | CT‐TBP |
[a] Evaluated with MP2/BSS‐A by employing the perturbed structures generated by using CIV. [b] Basic (superior) parameters are shown in bold. In the case of t‐HBwc, θ is basic if it is close to 90°, whereas θ p becomes basic if it is close to 150°. [c] Nonsuperior parameters are shown in italics if they do not satisfy the predicted nature on the basis of the superior parameters. [d] The value shows that the nature is borderline between t‐HBwc and CT‐MC.
Figure 5Plot of ΔE versus C for 1–29.
Figure 6Plot of ΔE versus θ for 1–29.
Figure 7Plot of ΔE versus θ p for 1–29. Black dots for 1–9 belong to G (A), red triangles for 10–17 to G (B), blue squares for 18–25 to G (C), and green diamonds for 26–29 to G (D), although a few deviations are also included.