Literature DB >> 23347280

Dynamic behavior of hydrogen bonds from pure closed shell to shared shell interaction regions elucidated by AIM dual functional analysis.

Satoko Hayashi1, Kohei Matsuiwa, Masayuki Kitamoto, Waro Nakanishi.   

Abstract

The dynamic behavior of hydrogen bonds (HBs) was clarified for the wide range of interactions applying AIM dual functional analysis. Plots of H(b)(r(c)) versus H(b)(r(c)) - V(b)(r(c))/2 are analyzed in the polar (R, θ) representation, where H(b)(r(c)) and V(b)(r(c)) are total electron and potential energy densities at bond critical points, respectively, for the fully optimized structures. Data of the fully optimized structure and four perturbed ones around it are plotted for each interaction, which give a specific curve. The curve is analyzed by (θ(p), κ(p)): θ(p) corresponds to the tangent line from the y-direction and κ(p) is the curvature. Whereas (R, θ) correspond to the static nature, (θ(p), κ(p)) represent the dynamic nature of interactions. Indeed, HBs can be classified only by one parameter of θ, but θ(p) supplies more information necessary for better understanding of HBs. Although H(2)Se-*-HSeH and H(3)N-*-HNH(2) show the nature of pure CS (closed shell) of the vdW-type, H(2)S-*-HSH and H(2)O-*-HOH contain the nature of pure CS other than the vdW-type (HB-typical). The regular CS nature is observed for B-*-HF (B = HF, H(2)Se, H(2)S, H(2)O, and H(2)C═O). The HF-*-HF interaction is described as HB-typical, whereas others are by CT(MC)-type. The nature of H(3)N-*-HX (X = F, Cl, Br) is regular CS of the CT(TBP)-type. HBs in charged species, such as [HOH-*-OH](-) and [H(2)O-*-H-*-OH(2)], show the weak covalent nature of SS (shard shell). The dynamic behavior of HBs helps us to understand HBs in more detail, in addition to the static behavior.

Entities:  

Year:  2013        PMID: 23347280     DOI: 10.1021/jp3098928

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  High-resolution X-ray diffraction determination of the electron density of 1-(8-PhSC10H6)SS(C10H6SPh-8')-1' with the QTAIM approach: evidence for S4 σ(4c-6e) at the naphthalene peri-positions.

Authors:  Yutaka Tsubomoto; Satoko Hayashi; Waro Nakanishi; Lucy K Mapp; Simon J Coles
Journal:  RSC Adv       Date:  2018-03-05       Impact factor: 4.036

2.  Behaviour of the XH-*-π and YX-*-π interactions (X, Y = F, Cl, Br and I) in the coronene π-system, as elucidated by QTAIM dual functional analysis with QC calculations.

Authors:  Satoko Hayashi; Yuji Sugibayashi; Waro Nakanishi
Journal:  RSC Adv       Date:  2018-05-03       Impact factor: 4.036

3.  Intrinsic dynamic and static nature of each HB in the multi-HBs between nucleobase pairs and its behavior, elucidated with QTAIM dual functional analysis and QC calculations.

Authors:  Waro Nakanishi; Satoko Hayashi; Taro Nishide
Journal:  RSC Adv       Date:  2020-07-01       Impact factor: 3.361

4.  Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM-DFA Parameters in Stability.

Authors:  Taro Nishide; Satoko Hayashi; Waro Nakanishi
Journal:  ChemistryOpen       Date:  2018-06-06       Impact factor: 2.911

5.  Behavior of the E-E' Bonds (E, E' = S and Se) in Glutathione Disulfide and Derivatives Elucidated by Quantum Chemical Calculations with the Quantum Theory of Atoms-in-Molecules Approach.

Authors:  Satoko Hayashi; Yutaka Tsubomoto; Waro Nakanishi
Journal:  Molecules       Date:  2018-02-17       Impact factor: 4.411

6.  The nature of G⋯E-Y σ(3c-4e) in o-Me n GCH2C6H4EY (Me n G = Me2N and MeE; E = O, S, Se and Te; Y = F, Cl, Br, EMe and Me) with contributions from CT and compliance constants in noncovalent G⋯E interactions.

Authors:  Satoko Hayashi; Taro Nishide; Waro Nakanishi; Luca Sancineto; Claudio Santi
Journal:  RSC Adv       Date:  2019-11-29       Impact factor: 3.361

7.  Nature of intramolecular O-H⋯π interactions as elucidated by QTAIM dual functional analysis with QC calculations.

Authors:  Satoko Hayashi; Taro Nishide; Waro Nakanishi
Journal:  RSC Adv       Date:  2019-05-17       Impact factor: 4.036

  7 in total

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