Literature DB >> 26914604

To What Extent are "Atoms in Molecules" Structures of Hydrocarbons Reproducible from the Promolecule Electron Densities?

Zahra Alimohammadi Keyvani1, Shant Shahbazian2, Mansour Zahedi1.   

Abstract

The "atoms in molecules" structures of 225 unsubstituted hydrocarbons are derived from both the optimized and the promolecule electron densities. A comparative analysis demonstrates that the molecular graphs derived from these two types of electron densities at the same geometry are equivalent for almost 90 % of the hydrocarbons containing the same number and types of critical points. For the remaining 10 % of molecules, it is demonstrated that by inducing small perturbations, through the variation of the used basis set or slight changes in the used geometry, the emerging molecular graphs from both densities are also equivalent. Interestingly, the (3, -1) critical point between two "non-bonded" hydrogen atoms, which triggered "H-H bonding" controversy is also observed in the promolecule densities of certain hydrocarbons. Evidently, the topology of the electron density is not dictated by chemical bonds or strong interactions and deformations induced by the interactions of atoms in molecules have a quite marginal role, virtually null, in shaping the general traits of the topology of molecular electron densities of the studied hydrocarbons, whereas the key factor is the underlying atomic densities.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  bond theory; computational chemistry; electron density; hydrocarbons; quantum theory

Year:  2016        PMID: 26914604     DOI: 10.1002/chem.201504862

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  11 in total

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2.  Non-covalent interactions from a Quantum Chemical Topology perspective.

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Journal:  RSC Adv       Date:  2018-03-05       Impact factor: 4.036

5.  Behaviour of the XH-*-π and YX-*-π interactions (X, Y = F, Cl, Br and I) in the coronene π-system, as elucidated by QTAIM dual functional analysis with QC calculations.

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6.  Behavior of the E-E' Bonds (E, E' = S and Se) in Glutathione Disulfide and Derivatives Elucidated by Quantum Chemical Calculations with the Quantum Theory of Atoms-in-Molecules Approach.

Authors:  Satoko Hayashi; Yutaka Tsubomoto; Waro Nakanishi
Journal:  Molecules       Date:  2018-02-17       Impact factor: 4.411

7.  Uncovering the Networks of Topological Neighborhoods in β-Strand and Amyloid β-Sheet Structures.

Authors:  Luhan Zhai; Yuko Otani; Tomohiko Ohwada
Journal:  Sci Rep       Date:  2019-07-24       Impact factor: 4.379

8.  Collective interactions among organometallics are exotic bonds hidden on lab shelves.

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Journal:  Nat Commun       Date:  2022-04-19       Impact factor: 17.694

9.  Nature of intramolecular O-H⋯π interactions as elucidated by QTAIM dual functional analysis with QC calculations.

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Journal:  RSC Adv       Date:  2019-05-17       Impact factor: 4.036

10.  Reappraising Schmidpeter's bis(iminophosphoranyl)phosphides: coordination to transition metals and bonding analysis.

Authors:  Adrien T Normand; E Daiann Sosa Carrizo; Corentin Magnoux; Esteban Lobato; Hélène Cattey; Philippe Richard; Stéphane Brandès; Charles H Devillers; Anthony Romieu; Pierre Le Gendre; Paul Fleurat-Lessard
Journal:  Chem Sci       Date:  2020-10-26       Impact factor: 9.825

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