| Literature DB >> 35508641 |
Ameneh Mehrjerd1, Hassan Rezaei1, Saeid Eslami2,3,4, Mariam Begum Ratna5, Nayyere Khadem Ghaebi6.
Abstract
Infertility is a significant health problem and assisted reproductive technologies to treat infertility. Despite all efforts, the success rate of these methods is still low. Also, each of these methods has side effects and costs. Therefore, accurate prediction of treatment success rate is a clinical challenge. This retrospective study aimed to internally validate and compare various machine learning models for predicting the clinical pregnancy rate (CPR) of infertility treatment. For this purpose, data from 1931 patients consisting of in vitro fertilization (IVF) or intra cytoplasmic sperm injection (ICSI) (733) and intra uterine insemination (IUI) (1196) treatments were included. Also, no egg or sperm donation data were used. The performance of machine learning algorithms to predict clinical pregnancy were expressed in terms of accuracy, recall, F-score, positive predictive value (PPV), brier score (BS), Matthew correlation coefficient (MCC), and receiver operating characteristic. The significance of the features with CPR and AUCs was evaluated by Student's t test and DeLong's algorithm. Random forest (RF) model had the highest accuracy in the IVF/ICSI treatment. The sensitivity, F1 score, PPV, and MCC of the RF model were 0.76, 0.73, 0.80, and 0.5, respectively. These values for IUI treatment were 0.84, 0.80, 0.82, and 0.34, respectively. The BS was 0.13 and 0.15 for IVF/ICS and IUI, respectively. In addition, the estimated AUCs of the RF model for IVF/ICS and IUI were 0.73 and 0.7, respectively. Some essential features were obtained based on RF ranking for the two datasets, including age, follicle stimulation hormone, endometrial thickness, and infertility duration. The results showed a strong relationship between clinical pregnancy and a woman's age. Also, endometrial thickness and the number of follicles decreased with increasing female age in both treatments.Entities:
Mesh:
Year: 2022 PMID: 35508641 PMCID: PMC9068696 DOI: 10.1038/s41598-022-10902-9
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.996
Figure 1Graphical abstract of our study.
Comparison among results of different prediction models with clinical pregnancy in IVF/ICS and IUI treatment.
| Model | Treatment | PPV | Sensitivity | F1 | Accuracy | AUC | BS | MCC |
|---|---|---|---|---|---|---|---|---|
| LR | IVF/ICSI IUI | 0.75 0.84 | 0.69 0.84 | 0.60 0.77 | 0.68 0.83 | 0.69 0.68 | 0.31 0.16 | 0.26 0.04 |
| RF | IVF/ICSI IUI | 0.80 0.84 | 0.76 0.84 | 0.73 0.8 | 0.76 0.84 | 0.73 0.70 | 0.13 0.15 | 0.50 0.34 |
| SVM | IVF/ICSI IUI | 0.42 0.68 | 0.65 0.82 | 0.51 0.75 | 0.64 0.82 | 0.5 0.64 | 0.35 0.17 | 0.00 0.00 |
| MLP | IVF/ICSI IUI | 0.72 0.68 | 0.69 0.82 | 0.63 0.75 | 0.69 0.82 | 0.63 0.68 | 0.30 0.175 | 0.32 0.14 |
| KNN | IVF/ICSI IUI | 0.74 0.77 | 0.74 0.81 | 0.71 0.78 | 0.74 0.81 | 0.50 0.64 | 0.23 0.15 | 0.06 0.24 |
| GNB | IVF/ICSI IUI | 0.67 0.72 | 0.70 0.68 | 0.70 0.75 | 0.69 0.75 | 0.67 0.67 | 0.39 0.21 | 0.16 0.17 |
PPV, Positive Predictive Value; AUC, Area Under ROC Curve; BS, Brier Score, MLP, Multi-Level Perceptron; SVM, Support Vector Machine; LR, Logistic Regression; RF, Random Forest; KNN, k-Nearest Neighbor; GNB, Gaussian Naïve Bayes.
Figure 2ROC Curves for IVF/ICSI and IUI. (a) ROC Curves by the models for IVF/ICSI; (b) ROC Curves by the models for IUI; Comparison among cross-validation process based on the accuracy (c) for IVF/ICSI (e) for IUI and AUC score (d) for IVF/ICSI and (f) for IUI.
Figure 3Correlation and Important Features in IVF/ICSI and IUI Treatment, (a) Correlation of features in IUI dataset, (b) Important features in IUI dataset, (c) Correlation of features in IVF/ICSI dataset, (d) Important features in IVF/ICSI dataset. The figures were drawn by using python platform version 3.8.
Figure 4Impact of essential features on CPR based on results of RF model. (a) Comparison between CPR and Female Age for IVF/ICSI and IUI datasets, (b) Comparison between CPR and Duration of Infertility, (c) Comparison between CPR and FSH, (d) Comparison between CPR and Endometrial Thickness.
Figure 5Relationship of Female Age with FHS for (e) IVF/ICSI, (f) IUI; Relationship of Female Age with Endometrial Thickness for (g) IVF/ICSI, (h) IUI; Relationship of Female Age with Number of Follicles > 16 mm for (i) IVF/ICSI, (j) IUI.
Clinical characteristics of couples undergoing IVF/ICSI and IUI with common factors.
| Characteristic | Successful (IVF/ICSI) (N = 240) | Successful (IUI) (N = 216) | |
|---|---|---|---|
| Age | |||
| Female | 31.3 ± 5.5 | 28.8 ± 5.2 | < 0.001a* |
| Male | 35.4 ± 9.9 | 32.4 ± 5.0 | 0.018 a* |
| AFC | 10.1 ± 5.4 | 11.58 ± 5.5 | 0.141 a |
| FSH (mIU/ml) | 9.2 ± 4.4 | 6.3 ± 3.3 | 0.005 a* |
| Addiction | |||
| Non | 139 (57.96%) | 202 (93.51%) | 0.213c |
| Smoke | 33 (13.75%) | 4 (1.85%) | |
| Alcohol | 15 (6.2%) | 1 (0.46%) | |
| Narcotic | 53 (22.9%) | 7 (3.24%) | |
| 2 (0.92%) | |||
| Diagnosis | 0.0076c* | ||
| Male Factor | 100 (41.66%) | 42 (19.44%) | |
| Female Factor | 70 (29.1%) | 9 (4.16%) | |
| Unexplained | 22 (9.1%) | 53 (24.53%) | |
| Mix | 48 (20%) | 51 (23.67%) | |
| Duration of Infertility (year) | 6.1 ± 4.7 | 3.52 ± 2.67 | 0.0074 a* |
| Endometrial Thickness (mm) | 9.0 ± 1.8 | 6.95 ± 2.19 | |
| Follicle Number | 15.3 ± 22.3 | 1.81 ± 1.22 | < 0.001 a* |
| Infertility | 0.09 | ||
| Primary | 185 (77.08%) | 147 (68.05%) | |
| Secondary | 55 (22.9%) | 69 (31.9%) | |
| Sperm | |||
| Count | 54.0 ± 49.8 | 77.9 ± 46.0 | 0.0064a* |
| Motility | 35.2 ± 22.8 | 39.8 ± 21.0 | 0.0049 a* |
| Morphology | 32.3 ± 22.8 | 50.3 ± 14.5 | 0.0051 a* |
| Total Gonadotropin Dose | 32.9 ± 13.7 | 4.9 ± 3.8 | 0.027 a* |
| Treatment Cycle Number | |||
| Cycle1 | 180 (75%) | 184 (85.18%) | 0.074 |
| Cycle 2 | 49 (20.4%) | 26 (12.03%) | |
| Cycle 3 | 11 (4.5%) | 6 (2.7%) | |
| BMI | 25.4 ± 4.4 | 25.6 ± 3.7 | 0.03 a* |
AFC, Antral Follicle Count; FSH, Follicle Stimulating Hormone; BMI, Body Mass Index, Mean ± Standard Division for continues and N (%), percent of the number of couples for categorical variables are presented.
*Significant features (p value < 0.05).
aExamined via Student's t test.
bExamined via Fisher's exact test.
cExamined via Chi-square test.