Literature DB >> 35474104

Epitranscriptomic dynamics in brain development and disease.

Andrew M Shafik1, Emily G Allen1, Peng Jin2.   

Abstract

Distinct cell types are generated at specific times during brain development and are regulated by epigenetic, transcriptional, and newly emerging epitranscriptomic mechanisms. RNA modifications are known to affect many aspects of RNA metabolism and have been implicated in the regulation of various biological processes and in disease. Recent studies imply that dysregulation of the epitranscriptome may be significantly associated with neuropsychiatric, neurodevelopmental, and neurodegenerative disorders. Here we review the current knowledge surrounding the role of the RNA modifications N6-methyladenosine, 5-methylcytidine, pseudouridine, A-to-I RNA editing, 2'O-methylation, and their associated machinery, in brain development and human diseases. We also highlight the need for the development of new technologies in the pursuit of directly mapping RNA modifications in both genome- and single-molecule-level approach.
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.

Entities:  

Year:  2022        PMID: 35474104     DOI: 10.1038/s41380-022-01570-2

Source DB:  PubMed          Journal:  Mol Psychiatry        ISSN: 1359-4184            Impact factor:   15.992


  160 in total

1.  N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Authors:  Xiao Wang; Boxuan Simen Zhao; Ian A Roundtree; Zhike Lu; Dali Han; Honghui Ma; Xiaocheng Weng; Kai Chen; Hailing Shi; Chuan He
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

2.  Regulation of Co-transcriptional Pre-mRNA Splicing by m6A through the Low-Complexity Protein hnRNPG.

Authors:  Katherine I Zhou; Hailing Shi; Ruitu Lyu; Adam C Wylder; Żaneta Matuszek; Jessica N Pan; Chuan He; Marc Parisien; Tao Pan
Journal:  Mol Cell       Date:  2019-08-21       Impact factor: 17.970

3.  ALKBH5-dependent m6A demethylation controls splicing and stability of long 3'-UTR mRNAs in male germ cells.

Authors:  Chong Tang; Rachel Klukovich; Hongying Peng; Zhuqing Wang; Tian Yu; Ying Zhang; Huili Zheng; Arne Klungland; Wei Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-26       Impact factor: 11.205

4.  ALKBH1-Mediated tRNA Demethylation Regulates Translation.

Authors:  Fange Liu; Wesley Clark; Guanzheng Luo; Xiaoyun Wang; Ye Fu; Jiangbo Wei; Xiao Wang; Ziyang Hao; Qing Dai; Guanqun Zheng; Honghui Ma; Dali Han; Molly Evans; Arne Klungland; Tao Pan; Chuan He
Journal:  Cell       Date:  2016-10-13       Impact factor: 41.582

5.  RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay.

Authors:  Ying Yang; Lu Wang; Xiao Han; Wen-Lan Yang; Mengmeng Zhang; Hai-Li Ma; Bao-Fa Sun; Ang Li; Jun Xia; Jing Chen; Jian Heng; Baixing Wu; Yu-Sheng Chen; Jia-Wei Xu; Xin Yang; Huan Yao; Jiawei Sun; Cong Lyu; Hai-Lin Wang; Ying Huang; Ying-Pu Sun; Yong-Liang Zhao; Anming Meng; Jinbiao Ma; Feng Liu; Yun-Gui Yang
Journal:  Mol Cell       Date:  2019-08-06       Impact factor: 17.970

6.  5-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m5C reader.

Authors:  Xin Yang; Ying Yang; Bao-Fa Sun; Yu-Sheng Chen; Jia-Wei Xu; Wei-Yi Lai; Ang Li; Xing Wang; Devi Prasad Bhattarai; Wen Xiao; Hui-Ying Sun; Qin Zhu; Hai-Li Ma; Samir Adhikari; Min Sun; Ya-Juan Hao; Bing Zhang; Chun-Min Huang; Niu Huang; Gui-Bin Jiang; Yong-Liang Zhao; Hai-Lin Wang; Ying-Pu Sun; Yun-Gui Yang
Journal:  Cell Res       Date:  2017-04-18       Impact factor: 25.617

7.  m6A in mRNA coding regions promotes translation via the RNA helicase-containing YTHDC2.

Authors:  Yuanhui Mao; Leiming Dong; Xiao-Min Liu; Jiayin Guo; Honghui Ma; Bin Shen; Shu-Bing Qian
Journal:  Nat Commun       Date:  2019-11-25       Impact factor: 14.919

8.  N6-methyladenosine-dependent regulation of messenger RNA stability.

Authors:  Xiao Wang; Zhike Lu; Adrian Gomez; Gary C Hon; Yanan Yue; Dali Han; Ye Fu; Marc Parisien; Qing Dai; Guifang Jia; Bing Ren; Tao Pan; Chuan He
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962

9.  MODOMICS: a database of RNA modification pathways. 2017 update.

Authors:  Pietro Boccaletto; Magdalena A Machnicka; Elzbieta Purta; Pawel Piatkowski; Blazej Baginski; Tomasz K Wirecki; Valérie de Crécy-Lagard; Robert Ross; Patrick A Limbach; Annika Kotter; Mark Helm; Janusz M Bujnicki
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

10.  Multiple links between 5-methylcytosine content of mRNA and translation.

Authors:  Ulrike Schumann; He-Na Zhang; Tennille Sibbritt; Anyu Pan; Attila Horvath; Simon Gross; Susan J Clark; Li Yang; Thomas Preiss
Journal:  BMC Biol       Date:  2020-04-15       Impact factor: 7.431

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  1 in total

Review 1.  Emerging roles of the RNA modifications N6-methyladenosine and adenosine-to-inosine in cardiovascular diseases.

Authors:  Vilbert Sikorski; Antti Vento; Esko Kankuri
Journal:  Mol Ther Nucleic Acids       Date:  2022-07-20       Impact factor: 10.183

  1 in total

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