| Literature DB >> 35471994 |
Anna Daily1, Prashanth Ravishankar1, Steve Harms1,2, V Suzanne Klimberg1,3,4.
Abstract
The changing expression levels of ocular proteins in response to systemic disease has been well established in literature. In this study, we examined the ocular proteome to identify protein biomarkers with altered expression levels in women diagnosed with breast cancer. Tear samples were collected from 273 participants using Schirmer strip collection methods. Following protein elution, proteome wide trypsin digestion with Liquid chromatography/tandem mass spectrometry (LC-MS/MS) was used to identify potential protein biomarkers with altered expression levels in breast cancer patients. Selected biomarkers were further validated by enzyme linked immunosorbent assay (ELISA). A total of 102 individual tear samples (51 breast cancer, 51 control) were analyzed by LC-MS/MS which identified 301 proteins. Spectral intensities between the groups were compared and 14 significant proteins (p-value <0.05) were identified as potential biomarkers in breast cancer patients. Three biomarkers, S100A8 (p-value = 0.0069, 7.8-fold increase), S100A9 (p-value = 0.0048, 10.2-fold increase), and Galectin-3 binding protein (p-value = 0.01, 3.0-fold increase) with an increased expression in breast cancer patients were selected for validation using ELISA. Validation by ELISA was conducted using 171 individual tear samples (75 Breast Cancer and 96 Control). Similar to the observed LC-MS/MS results, S100A8 (p-value <0.0001) and S100A9 (p-value <0.0001) showed significantly higher expression in breast cancer patients. However, galectin-3 binding protein had increased expression in the control group. Our results provide further support for using tear proteins to detect non-ocular systemic diseases such as breast cancer. Our work provides crucial details to support the continued evaluation of tear samples in the screening and diagnosis of breast cancer and paves the way for future evaluation of the tear proteome for screening and diagnosis of systemic diseases.Entities:
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Year: 2022 PMID: 35471994 PMCID: PMC9041847 DOI: 10.1371/journal.pone.0267676
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.752
Inclusion/Exclusion criteria.
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| <18 years of age OR >100 years of age | 18–100 years of age | 18–100 years of age |
| Concurrent eye infection or trauma | Presenting for the evaluation of an abnormal exam or test (mammogram, ultrasound, MRI, PET, etc.)- they may or may not have a mass present. | Have been diagnosed but have not received treatment. |
| Acute conjunctivitis | Presenting for the evaluation of a palpable lump or mass | |
| Presenting with a mass may be pre- or post-biopsy as long as there is a portion of the mass remaining. | ||
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| <18 years of age OR >100 years of age | 18–100 years of age | |
| Concurrent eye infection or trauma | Do not currently have or are being treated for breast cancer. | |
| Acute conjunctivitis | ||
Fig 1a) Schematic of Tear Collection using Schirmer strip- i) Schirmer strip is placed in the lower conjunctival fornix; ii) wetted strips are placed in screw-top tube prefilled with 225μL of 1XPBS and centrifuged to collect the tears; iii) Schirmer Strips are discarded to collect tears and stored in -80°C before being analyzed by LC-MS/MS and validated by ELISA. b) Functional classification of 301 mapped proteins in tear samples using PANTHER classification system.
Population demographics of tear samples used for LC-MS/MS and ELISA.
| LC-MS/MS | ELISA | |||||||
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| No. of Patients, % | No. of Patients, % | |||||||
| Breast Cancer (N = 51) | Control (N = 51) | Total (N = 102) | Breast Cancer (N = 75) | Control (N = 96) | Total (N = 171) | |||
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| <39 | 2 (3.9) | 12 (23.53) | 14 (13.73) | 2 (2.67) | 15 (15.62) | 17 (9.94) | ||
| 40–49 | 10 (19.6) | 6 (11.76) | 16 (15.67) | 12 (16) | 16 (16.67) | 28 (16.38) | ||
| 50–59 | 12 (23.5) | 14 (27.45) | 26 (25.50) | 23 (30.67) | 26 (27.08) | 49 (28.65) | ||
| 60–69 | 16 (31.4) | 6 (11.76) | 22 (21.57) | 16 (21.33) | 13 (13.54) | 29 (16.97) | ||
| >70 | 11 (21.6) | 3 (5.89) | 14 (13.73) | 13 (17.33) | 4 (4.17) | 17 (9.94) | ||
| NR | - | 10 (19.61) | 10 (9.80) | 9 (12) | 22 (22.92) | 31 (18.13) | ||
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| African-American | 2 (3.92) | 2 (3.85) | 4 (3.93) | 2 (2.67) | 4 (4.17) | 6 (3.51) | ||
| Asian | 1 (1.96) | 0 (0.0) | 1 (0.98) | 1 (1.33) | 0 (0.0) | 1 (0.58) | ||
| Caucasian | 46 (90.2) | 43 (82.69) | 89 (87.25) | 63 (84) | 74 (77.08) | 137 (80.12) | ||
| Hispanic | 1 (1.96) | 1 (1.92) | 2 (1.96) | 1 (1.33) | 2 (2.08) | 3 (1.75) | ||
| Native Hawaiian or PI | 0 (0.0) | 0 (0.0) | 0 (0.0) | 2 (2.67) | 0 (0.0) | 2 (1.17) | ||
| NR | 1 (1.96) | 5 (9.62) | 6 (5.88) | 6 (8) | 16 (16.67) | 22 (12.87) | ||
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| Yes | 7 (13.72) | 5 (9.80) | 12 (11.76) | 5 (6.67) | 0 (0.0) | 5 (2.29) | ||
| No | 41 (80.39) | 26 (50.98) | 67 (65.69) | 70 (93.33) | 96 (100) | 166 (97.08) | ||
| NR | 3 (5.89) | 20 (39.22) | 23 (22.55) | - | - | - | ||
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| Yes | 22 (43.14) | 10 (19.61) | 32 (31.37) | 29 (38.67) | 21 (21.87) | 50 (29.24) | ||
| No | 29 (56.86) | 20 (39.22) | 49 (48.04) | 42 (56) | 48 (50) | 90 (52.63) | ||
| NR | 0 (0.0) | 21 (41.17) | 21 (41.17) | 4 (5.33) | 27 (28.13) | 31 (18.13) | ||
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| (N = 30) | (N = 22) | (N = 52) | (N = 49) | (N = 64) | (N = 113) | ||
| Fatty | 1 (3.33) | 2 (9.10) | 3 (5.77) | 1 (2.04) | 5 (7.81) | 6 (5.31) | ||
| Scattered fibroglandular densities | 13 (43.33) | 15 (68.18) | 28 (53.84) | 21 (42.86) | 35 (54.69) | 56 (49.56) | ||
| Heterogeneously Dense | 14 (46.67) | 4 (18.18) | 18 (34.62) | 24 (48.97) | 20 (31.25) | 44 (38.94) | ||
| Extremely Dense | 2 (6.67) | 1 (4.54) | 3 (5.77) | 3 (6.12) | 4 (6.25) | 7 (6.19) | ||
NR—No clinical or demographic data were reported.
Distribution of breast cancer types and grade designations.
| LC-MS/MS Sample Pool | ELISA Sample Pool | ||||
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| No. of Patients (%) | No. of Patients (%) | ||||
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| IDC | 28 (54.91) |
| IDC | 44 (58.67) | |
| ILC | 4 (7.84) |
| ILC | 5 (6.67) | |
| DCIS | 13 (25.49) |
| DCIS | 18 (24) | |
| IDC/DCIS | 3 (5.88) |
| IDC/DCIS | 4 (5.33) | |
| Other | 1 (1.96) |
| Other | 1 (1.33) | |
| NR | 2 (3.92) |
| NR | 3 (4) | |
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| I | 7 (13.73) |
| I | 7 (9.33) | |
| II | 19 (37.25) | II | 30 (40) | ||
| III | 13 (25.49) | III | 20 (26.67) | ||
| NR | 12 (23.53) | NR | 18 (24) | ||
NR—No clinical or demographic data were reported.
Summary of relevant biomarkers candidates from mass spec analysis.
| Protein Name | Gene Name | Function | Cancer vs Control | Fold Change (elevated) |
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| Alpha-actinin-4 | ACTN4 | Cell adhesion, cell migration, apoptosis regulation. | 0.0443 | 2.3 (CRL) |
| Alcohol dehydrogenase 1C | ADH1G | Catalytic activity- ethanol, retinol, and other aliphatic alcohol metabolism. | 0.0424 | 3.8 (CRL) |
| Aldo-keto reductase family 1 member C | AK1C1 | Steroid hormone homeostasis, prostaglandin metabolism, metabolic activation of polycyclic aromatic hydrocarbons. | 0.0256 | 3.17 (CRL) |
| Retinal dehydrogenase 1 | AL1A1 | Retinol metabolism, ethanol oxidation. | 0.0325 | 1.77 (CRL) |
| Uncharacterized Protein | B4E1Z4 | 0.0334 | 1.7 (BC) | |
| Cystatin-N | CYTN | Regulation of cysteine proteinases, antimicrobial, antiviral. | 0.0355 | 1.68 (CRL) |
| Glyceraldehyde-3-phosphate dehydrogenase | G3P | Glycolysis, immune response, cytoskeleton organization, apoptosis. | 0.0405 | 1.9 (CRL) |
| Keratin type 1 cytoskeletal 9 | K1C9 | Epidermis development, cytoskeletal structure integrity, keratin filament assembly. | 0.0428 | 5.5 (BC) |
| L-lactate dehydrogenase A chain | LDHA | Oxidoreductase; Involved in the lactate and NAD metabolic process, positive regulation of apoptotic process. | 0.0194 | 2.3 (CRL) |
| L-lactate dehydrogenase B chain | LDHB | 0.0265 | 3.4 (CRL) | |
| Galectin-3-binding protein | LG3BP | Immune system regulator, cell adhesion. | 0.01 | 3.0 (BC) |
| S100 A8 | S10A8 | Inflammation, immune response, inhibitor of casein kinase. | 0.0069 | 7.8 (BC) |
| S100 A9 | S10A9 | 0.0048 | 10.2 (BC) | |
| SPARC-like protein 1 | SPRL1 | Regulates ECM remodeling and cell-matrix interactions and angiogenesis. | 0.0371 | 10.3 (BC) |
Fig 2Investigation of biomarkers by ELISA- a) S100A8, b) S100A9, and c) LG3BP expression levels in tear samples between healthy and breast cancer women. (n = 96 control and 75 breast cancer samples, * indicates p < 0.0001); d) Receiver Operating Characteristics (ROC) curve for protein expression of potential breast cancer biomarkers. The area under the ROC curve (AUC) represents the accuracy of the combined potential biomarkers for distinguishing between the control and breast cancer sample groups.