Literature DB >> 35464923

Planktonic Aggregates as Hotspots for Heterotrophic Diazotrophy: The Plot Thickens.

Lasse Riemann1, Eyal Rahav2, Uta Passow3, Hans-Peter Grossart4,5, Dirk de Beer6, Isabell Klawonn7, Meri Eichner8, Mar Benavides9,10, Edo Bar-Zeev11.   

Abstract

Biological dinitrogen (N2) fixation is performed solely by specialized bacteria and archaea termed diazotrophs, introducing new reactive nitrogen into aquatic environments. Conventionally, phototrophic cyanobacteria are considered the major diazotrophs in aquatic environments. However, accumulating evidence indicates that diverse non-cyanobacterial diazotrophs (NCDs) inhabit a wide range of aquatic ecosystems, including temperate and polar latitudes, coastal environments and the deep ocean. NCDs are thus suspected to impact global nitrogen cycling decisively, yet their ecological and quantitative importance remain unknown. Here we review recent molecular and biogeochemical evidence demonstrating that pelagic NCDs inhabit and thrive especially on aggregates in diverse aquatic ecosystems. Aggregates are characterized by reduced-oxygen microzones, high C:N ratio (above Redfield) and high availability of labile carbon as compared to the ambient water. We argue that planktonic aggregates are important loci for energetically-expensive N2 fixation by NCDs and propose a conceptual framework for aggregate-associated N2 fixation. Future studies on aggregate-associated diazotrophy, using novel methodological approaches, are encouraged to address the ecological relevance of NCDs for nitrogen cycling in aquatic environments.
Copyright © 2022 Riemann, Rahav, Passow, Grossart, de Beer, Klawonn, Eichner, Benavides and Bar-Zeev.

Entities:  

Keywords:  NCDs; aggregates; aquatic; heterotrophic bacteria; marine; nitrogen fixation

Year:  2022        PMID: 35464923      PMCID: PMC9019601          DOI: 10.3389/fmicb.2022.875050

Source DB:  PubMed          Journal:  Front Microbiol        ISSN: 1664-302X            Impact factor:   6.064


  59 in total

Review 1.  Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

Authors:  Niculina Musat; Rachel Foster; Tomas Vagner; Birgit Adam; Marcel M M Kuypers
Journal:  FEMS Microbiol Rev       Date:  2011-09-26       Impact factor: 16.408

2.  Patterns of bacterial diversity in the marine planktonic particulate matter continuum.

Authors:  Mireia Mestre; Encarna Borrull; MMontserrat Sala; Josep M Gasol
Journal:  ISME J       Date:  2017-01-03       Impact factor: 10.302

3.  Ocean chemistry. Dilution limits dissolved organic carbon utilization in the deep ocean.

Authors:  Jesús M Arrieta; Eva Mayol; Roberta L Hansman; Gerhard J Herndl; Thorsten Dittmar; Carlos M Duarte
Journal:  Science       Date:  2015-03-19       Impact factor: 47.728

4.  Contribution of Heterotrophic Diazotrophs to N2 Fixation in a Eutrophic River: Free-Living vs. Aggregate-Associated.

Authors:  Eyal Geisler; Eyal Rahav; Edo Bar-Zeev
Journal:  Front Microbiol       Date:  2022-02-14       Impact factor: 5.640

5.  Microbial metabolism of transparent exopolymer particles during the summer months along a eutrophic estuary system.

Authors:  Edo Bar-Zeev; Eyal Rahav
Journal:  Front Microbiol       Date:  2015-05-12       Impact factor: 5.640

6.  Undervalued Pseudo-nifH Sequences in Public Databases Distort Metagenomic Insights into Biological Nitrogen Fixers.

Authors:  Kazumori Mise; Yoko Masuda; Keishi Senoo; Hideomi Itoh
Journal:  mSphere       Date:  2021-11-17       Impact factor: 4.389

7.  Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods.

Authors:  Juan José Pierella Karlusich; Eric Pelletier; Fabien Lombard; Madeline Carsique; Etienne Dvorak; Sébastien Colin; Marc Picheral; Francisco M Cornejo-Castillo; Silvia G Acinas; Rainer Pepperkok; Eric Karsenti; Colomban de Vargas; Patrick Wincker; Chris Bowler; Rachel A Foster
Journal:  Nat Commun       Date:  2021-07-06       Impact factor: 14.919

8.  Application of stable-isotope labelling techniques for the detection of active diazotrophs.

Authors:  Roey Angel; Christopher Panhölzl; Raphael Gabriel; Craig Herbold; Wolfgang Wanek; Andreas Richter; Stephanie A Eichorst; Dagmar Woebken
Journal:  Environ Microbiol       Date:  2017-12-15       Impact factor: 5.476

9.  The distribution and relative ecological roles of autotrophic and heterotrophic diazotrophs in the McMurdo Dry Valleys, Antarctica.

Authors:  Kathryn J Coyne; Alexander E Parker; Charles K Lee; Jill A Sohm; Andrew Kalmbach; Troy Gunderson; Rosa León-Zayas; Douglas G Capone; Edward J Carpenter; S Craig Cary
Journal:  FEMS Microbiol Ecol       Date:  2020-03-01       Impact factor: 4.194

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  2 in total

1.  Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N2 fixation in the pelagic ocean.

Authors:  Søren Hallstrøm; Jean-Baptiste Raina; Martin Ostrowski; Donovan H Parks; Gene W Tyson; Philip Hugenholtz; Roman Stocker; Justin R Seymour; Lasse Riemann
Journal:  ISME J       Date:  2022-08-01       Impact factor: 11.217

2.  Dark Diazotrophy during the Late Summer in Surface Waters of Chile Bay, West Antarctic Peninsula.

Authors:  María E Alcamán-Arias; Jerónimo Cifuentes-Anticevic; Wilson Castillo-Inaipil; Laura Farías; Cynthia Sanhueza; Beatriz Fernández-Gómez; Josefa Verdugo; Leslie Abarzua; Christina Ridley; Javier Tamayo-Leiva; Beatriz Díez
Journal:  Microorganisms       Date:  2022-05-31
  2 in total

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