Literature DB >> 35915168

Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N2 fixation in the pelagic ocean.

Søren Hallstrøm1, Jean-Baptiste Raina2, Martin Ostrowski2, Donovan H Parks3, Gene W Tyson4, Philip Hugenholtz3, Roman Stocker5, Justin R Seymour2, Lasse Riemann6.   

Abstract

Heterotrophic bacterial diazotrophs (HBDs) are ubiquitous in the pelagic ocean, where they have been predicted to carry out the anaerobic process of nitrogen fixation within low-oxygen microenvironments associated with marine pelagic particles. However, the mechanisms enabling particle colonization by HBDs are unknown. We hypothesized that HBDs use chemotaxis to locate and colonize suitable microenvironments, and showed that a cultivated marine HBD is chemotactic toward amino acids and phytoplankton-derived DOM. Using an in situ chemotaxis assay, we also discovered that diverse HBDs at a coastal site are motile and chemotactic toward DOM from various phytoplankton taxa and, indeed, that the proportion of diazotrophs was up to seven times higher among the motile fraction of the bacterial community compared to the bulk seawater community. Finally, three of four HBD isolates and 16 of 17 HBD metagenome assembled genomes, recovered from major ocean basins and locations along the Australian coast, each encoded >85% of proteins affiliated with the bacterial chemotaxis pathway. These results document the widespread capacity for chemotaxis in diverse and globally relevant marine HBDs. We suggest that HBDs could use chemotaxis to seek out and colonize low-oxygen microenvironments suitable for nitrogen fixation, such as those formed on marine particles. Chemotaxis in HBDs could therefore affect marine nitrogen and carbon biogeochemistry by facilitating nitrogen fixation within otherwise oxic waters, while also altering particle degradation and the efficiency of the biological pump.
© 2022. The Author(s), under exclusive licence to International Society for Microbial Ecology.

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Year:  2022        PMID: 35915168      PMCID: PMC9561647          DOI: 10.1038/s41396-022-01299-4

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   11.217


  52 in total

1.  Speed-dependent chemotactic precision in marine bacteria.

Authors:  Kwangmin Son; Filippo Menolascina; Roman Stocker
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-20       Impact factor: 11.205

2.  Significant N₂ fixation by heterotrophs, photoheterotrophs and heterocystous cyanobacteria in two temperate estuaries.

Authors:  Mikkel Bentzon-Tilia; Sachia J Traving; Mustafa Mantikci; Helle Knudsen-Leerbeck; Jørgen L S Hansen; Stiig Markager; Lasse Riemann
Journal:  ISME J       Date:  2014-07-15       Impact factor: 10.302

Review 3.  Aerotaxis and other energy-sensing behavior in bacteria.

Authors:  B L Taylor; I B Zhulin; M S Johnson
Journal:  Annu Rev Microbiol       Date:  1999       Impact factor: 15.500

Review 4.  Marine Non-Cyanobacterial Diazotrophs: Moving beyond Molecular Detection.

Authors:  Deniz Bombar; Ryan W Paerl; Lasse Riemann
Journal:  Trends Microbiol       Date:  2016-07-29       Impact factor: 17.079

5.  A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities.

Authors:  Bennett S Lambert; Jean-Baptiste Raina; Vicente I Fernandez; Christian Rinke; Nachshon Siboni; Francesco Rubino; Philip Hugenholtz; Gene W Tyson; Justin R Seymour; Roman Stocker
Journal:  Nat Microbiol       Date:  2017-08-28       Impact factor: 17.745

6.  Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone.

Authors:  Clara Martínez-Pérez; Wiebke Mohr; Anne Schwedt; Julia Dürschlag; Cameron M Callbeck; Harald Schunck; Julien Dekaezemacker; Caroline R T Buckner; Gaute Lavik; Bernhard M Fuchs; Marcel M M Kuypers
Journal:  Environ Microbiol       Date:  2018-01-03       Impact factor: 5.491

7.  Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria.

Authors:  Hanna Farnelid; Anders F Andersson; Stefan Bertilsson; Waleed Abu Al-Soud; Lars H Hansen; Søren Sørensen; Grieg F Steward; Åke Hagström; Lasse Riemann
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

8.  RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.

Authors:  Alexey M Kozlov; Diego Darriba; Tomáš Flouri; Benoit Morel; Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2019-11-01       Impact factor: 6.937

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics.

Authors:  Christian Rinke; Serene Low; Ben J Woodcroft; Jean-Baptiste Raina; Adam Skarshewski; Xuyen H Le; Margaret K Butler; Roman Stocker; Justin Seymour; Gene W Tyson; Philip Hugenholtz
Journal:  PeerJ       Date:  2016-09-22       Impact factor: 2.984

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