| Literature DB >> 35455733 |
Na Shi1, Lan Lan2, Jiawei Luo3, Ping Zhu1, Thomas R W Ward4, Peter Szatmary4, Robert Sutton4, Wei Huang1,4, John A Windsor5, Xiaobo Zhou6, Qing Xia1.
Abstract
BACKGROUND: Current approaches to predicting intervention needs and mortality have reached 65-85% accuracy, which falls below clinical decision-making requirements in patients with acute pancreatitis (AP). We aimed to accurately predict therapeutic intervention needs and mortality on admission, in AP patients, using machine learning (ML).Entities:
Keywords: acute pancreatitis; interventions; machine learning; mortality; predictor
Year: 2022 PMID: 35455733 PMCID: PMC9031087 DOI: 10.3390/jpm12040616
Source DB: PubMed Journal: J Pers Med ISSN: 2075-4426
Figure 1The flow chart of this study.
Characteristics between intervention and non-intervention patients with AP.
| Characteristic | Total | Intervention | Non-Intervention |
|
|---|---|---|---|---|
|
| ||||
| Age, year (M[Q]) | 46 (38–58) | 48 (39–62) | 46 (38–57) | 0.125 |
| Male (%) | 1822 (64.0) | 88 (66.7) | 1734 (63.9) | 0.578 |
| CCI (M[Q]) | 0 (0–1) | 0 (0–1) | 0 (0–1) | 0.260 |
| Modified CCI, (M[Q]) | 0 (0–1) | 0 (0–2) | 0 (0–1) | 0.176 |
| ASA (%) | 0.005 | |||
| I | 2120 (74.5) | 108 (81.8) | 2012 (74.1) | |
| II | 573 (20.1) | 13 (9.8) | 560 (20.6) | |
| III | 153 (5.4) | 11 (9.3) | 142 (5.2) | |
| From onset to admission, h (M[Q]) | 18 (10–27) | 24 (10–33) | 18 (10–27) | 0.001 |
| Aetiology (%) | 0.063 | |||
| Biliary | 1069 (37.6) | 65 (49.2) | 1004 (37.0) | |
| Hypertriglyceridemia | 805 (28.3) | 33 (25.0) | 772 (28.4) | |
| Alcoholics | 216 (7.6) | 8 (6.1) | 208 (7.7) | |
| ERCP | 20 (0.7) | 0 (0.0) | 20 (0.7) | |
| Drug-induced | 8 (0.3) | 1 (0.8) | 7 (0.3) | |
| Others | 728 (25.6) | 25 (18.9) | 703 (25.9) | |
|
| ||||
| WBC, 109/L (M[Q]) | 12.9 (10.01–16.30) | 14.3 (10.43–17.35) | 12.87 (10–16.26) | 0.011 |
| Neutrophils, 109/L (M[Q]) | 11.00 (8.10–14.34) | 12.66 (9.17–15.61) | 10.95 (8.05–14.28) | 0.001 |
| Lymphocyte, 109/L (M[Q]) | 1.01 (0.70–1.49) | 0.96 (0.62–1.53) | 1.02 (0.70–1.49) | 0.352 |
| Hematocrit, % (M[Q]) | 43 (39–46) | 45 (40–49) | 43 (39.3–46) | 0.003 |
| Urea, mmol/L (M[Q]) | 5.00 (3.72–6.60) | 6.36 (4.79–8.61) | 4.92 (3.70–6.47) | <0.001 * |
| Creatinine, μmmol/L (M[Q]) | 74 (62–89) | 87 (68–134) | 73 (62–88) | <0.001 * |
| Albumin, g/L (M[Q]) | 42.0 (38.2–45.3) | 37.3 (32.3–43.2) | 42.1 (38.6–45.4) | <0.001 * |
| CRP, mg/L (M[Q]) | 28.7 (3.31–142) | 158 (20–22) | 26 (2.7–136) | <0.001 * |
|
| ||||
| SOFA (M[Q]) | 0 (0–2) | 2 (0–3) | 0 (0–1) | <0.001 * |
| BISAP (M[Q]) | 1 (0–2) | 2 (1–2) | 1 (0–2) | <0.001 * |
| SIRS (M[Q]) | 1 (1–2) | 2 (1–3) | 1 (1–2) | <0.001 * |
| APACHE II (M[Q]) | 4 (2–7) | 7 (4–11) | 4 (2–7) | <0.001 * |
| RAC (%) | <0.001 * | |||
| Mild | 1373 (48.2) | 4 (3.0) | 1369 (50.4) | |
| Moderately severe | 888 (31.2) | 29 (22.0) | 859 (31.7) | |
| Severe | 585 (20.6) | 99 (75.0) | 486 (17.9) | |
| Worst MCTSI (M[Q]) | 2 (0–6) | 8 (6–10) | 2 (0–6) | <0.001 * |
| From admission to worst MCTSI, day (M[Q]) | 0 (0–2) | 2 (1–9) | 0 (0–1) | <0.001 * |
|
| ||||
|
| ||||
| APFC (%) | 1121 (39.4) | 98 (74.2) | 1023 (37.7) | <0.001 * |
| Necrosis (%) | 416 (14.6) | 84 (63.6) | 332 (12.2) | <0.001 * |
|
| ||||
| Pulmonary failure (%) | <0.001 * | |||
| TOF | 417 (14.7) | 8 (6.1) | 409 (15.1) | |
| POF | 578 (20.3) | 99 (75.0) | 479 (17.6) | |
| Onset of pulmonary failure, day (M[Q]) | 0 (0–1) | 1 (1–2) | 0 (0–1) | <0.001 * |
| Duration of pulmonary failure, day (M[Q]) | 0 (0–1) | 12.5 (1–24) | 0 (0–1) | <0.001 * |
| Circulatory failure (%) | <0.001 * | |||
| TOF | 42 (1.5) | 9 (6.8) | 33 (1.2) | |
| POF | 111 (3.9) | 42 (31.8) | 69 (2.5) | |
| Onset of circulatory failure, day (M[Q]) | 0 (0–0) | 0 (0–3) | 0 (0–0) | <0.001 * |
| Duration of circulatory failure, day (M[Q]) | 0 (0–0) | 0 (0–3) | 0 (0–0) | <0.001 * |
| Renal failure (%) | <0.001 * | |||
| TOF | 57 (2.0) | 15 (11.4) | 42 (1.5) | |
| POF | 104 (3.7) | 29 (22.0) | 75 (2.8) | |
| Onset of renal failure, day (M[Q]) | 0 (0–0) | 0 (0–1) | 0 (0–0) | <0.001 * |
| Duration of renal failure, day (M[Q]) | 0 (0–0) | 0 (0–1) | 0 (0–0) | <0.001 * |
| 268 (9.4) | 15 (11.4) | 253 (9.3) | 0.528 | |
| 85 (3.0) | 81 (61.4) | 4 (0.1) | <0.001 * | |
| <0.001 * | ||||
| Bacteremia | 75 (2.6) | 24 (18.2) | 51 (1.9) | |
| Lung and others | 147 (5.2) | 31 (23.5) | 116 (4.3) |
AP, acute pancreatitis; CCI, Charlson comorbidity index; ASA, American society of anesthesiologists; ERCP, endoscopic retrograde cholangiopancreatography; WBC, white blood cell count; CRP, C-reactive protein; SOFA, sequential organ failure assessment; BISAP, bedside index of severity in acute pancreatitis; SIRS, systemic inflammatory response syndrome; APACHE II, acute physiology and chronic health evaluation II; RAC, revised Atlanta classification; MCTSI, modified computerized tomographic severity index; APFC, acute peripancreatic fluid collection; IPN, infected pancreatic necrosis; TOF, transient organ failure; POF, persistent organ failure; M[Q], median and inter-quartile range for quantitative data; (%), number and percentage for categorical variables; * p < 0.05, indicates statistical significance.
Top 10 important features for intervention or mortality among the three groups.
| Intervention | Death in Intervention | Death in Non-Intervention | |||
|---|---|---|---|---|---|
| Variable | Mean Decrease Gini | Variable | Mean Decrease Gini | Variable | Mean Decrease Gini |
| Duration of pulmonary failure | 23.78 | Duration of renal failure | 2.54 | Renal failure | 10.99 |
| Neutrophils | 10.18 | Duration of circulatory failure | 2.52 | Circulatory failure | 10.00 |
| Albumin | 9.91 | Onset of circulatory failure | 2.35 | Duration of circulatory failure | 8.62 |
| Lymphocytes | 9.06 | Circulatory failure | 2.21 | Onset of circulatory failure | 7.70 |
| Creatine | 8.36 | Renal failure | 1.60 | Duration of renal failure | 6.37 |
| Age | 8.27 | Creatinine | 1.59 | Onset of renal failure | 5.46 |
| Hematocrit | 8.09 | Duration of pulmonary failure | 1.38 | APACHE II | 4.72 |
| Onset of circulatory failure | 7.95 | Urea | 1.19 | Duration of pulmonary failure | 4.45 |
| APACHE II | 6.70 | APACHE II | 1.19 | Creatinine | 4.09 |
| Duration of circulatory failure | 5.48 | CRP | 0.92 | WBC | 3.80 |
APACHE II, acute physiology and chronic health evaluation II; CRP, C-reactive protein; WBC, white blood cell count.
Figure 2The relationship between important variable (the top five) and outcome. The first column (a1–a5) displays the top features for intervention, the second column (b1–b5) is for death in the intervention group, and the third column (c1–c5) is for death in the non-intervention group.
Performance of prediction for the three groups.
| Accuracy | AUC | Sensitivity | Specificity | Likelihood Ratio (+) | Likelihood Ratio (−) | |
|---|---|---|---|---|---|---|
|
| ||||||
| Validation ( | 0.96 | 0.90 | 0.74 | 0.97 | 22.3 | 0.27 |
| Test ( | 0.97 | 0.91 | 0.76 | 0.97 | 25.5 | 0.35 |
|
| ||||||
| Validation ( | 0.84 | 0.89 | 0.74 | 0.86 | 6.14 | 0.30 |
| Test ( | 0.82 | 0.89 | 0.82 | 0.82 | 4.80 | 0.28 |
|
| ||||||
| Validation ( | 0.98 | 0.98 | 0.76 | 0.99 | 69.6 | 0.25 |
| Test ( | 0.98 | 0.99 | 0.77 | 0.99 | 71.9 | 0.31 |
Performance of prediction with ML models and clinical scoring systems in the test set.
| Sensitivity | Specificity | Likelihood Ratio (+) | Post-Test Probability (%) | |
|---|---|---|---|---|
| Intervention (4.64% pre-test probability) | ||||
| ML model | 0.76 | 0.97 | 25.5 | 55.4 |
| SOFA | 0.08 | 0.98 | 5.0 | 19.6 |
| BISAP | 0.08 | 0.98 | 4.3 | 17.3 |
| SIRS | 0.06 | 0.98 | 3.2 | 13.5 |
| APACHE II | 0.08 | 0.98 | 5.4 | 20.8 |
| Worst MCTSI | 0.13 | 0.99 | 12.7 | 38.2 |
| Death in intervention (21.97% pre-test probability) | ||||
| ML model | 0.82 | 0.82 | 4.8 | 57.5 |
| SOFA | 0.69 | 0.78 | 3.7 | 51.0 |
| BISAP | 0.52 | 0.96 | 4.4 | 55.3 |
| SIRS | 0.44 | 0.84 | 2.3 | 39.3 |
| APACHE II | 0.69 | 0.92 | 6.4 | 64.3 |
| Worst MCTSI | 0.48 | 0.69 | 2.0 | 36.0 |
| Death in non-intervention (3.39% pre-test probability) | ||||
| ML model | 0.77 | 0.99 | 71.9 | 71.6 |
| SOFA | 0.11 | 0.99 | 21.5 | 43.0 |
| BISAP | 0.14 | 0.99 | 32.5 | 53.3 |
| SIRS | 0.07 | 0.99 | 12.7 | 30.8 |
| APACHE II | 0.15 | 0.99 | 30.2 | 51.4 |
| Worst MCTSI | 0.03 | 0.96 | 1.0 | 3.4 |
ML, machine learning; SOFA, sequential organ failure assessment; BISAP, bedside index of severity in acute pancreatitis; SIRS, systemic inflammatory response syndrome; APACHE II, acute physiology and chronic health evaluation II; MCTSI, modified computerized tomographic severity index.