Literature DB >> 35451788

Genomic Prediction of Complex Traits in Perennial Plants: A Case for Forest Trees.

Fikret Isik1.   

Abstract

This chapter provides an overview of the genomic selection progress in long-lived forest tree species. Factors affecting the prediction accuracy in genomic prediction are assessed with examples from empirical studies. Infrastructure and resources required for the implementation of genomic selection are evaluated. Some general guidelines are provided for the successful application of genomic selection in forest tree breeding programs.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Genetic relatedness; Genomic selection; Heritability; Prediction accuracy; SNP arrays

Mesh：

Year:  2022        PMID： 35451788     DOI： 10.1007/978-1-0716-2205-6_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  56 in total

1.  Efficient methods to compute genomic predictions.

Authors:  P M VanRaden
Journal:  J Dairy Sci       Date:  2008-11       Impact factor: 4.034

2.  Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information.

Authors:  I Misztal; A Legarra; I Aguilar
Journal:  J Dairy Sci       Date:  2009-09       Impact factor: 4.034

Review 3.  Genomic Selection in Plant Breeding: Methods, Models, and Perspectives.

Authors:  José Crossa; Paulino Pérez-Rodríguez; Jaime Cuevas; Osval Montesinos-López; Diego Jarquín; Gustavo de Los Campos; Juan Burgueño; Juan M González-Camacho; Sergio Pérez-Elizalde; Yoseph Beyene; Susanne Dreisigacker; Ravi Singh; Xuecai Zhang; Manje Gowda; Manish Roorkiwal; Jessica Rutkoski; Rajeev K Varshney
Journal:  Trends Plant Sci       Date:  2017-09-28       Impact factor: 18.313

4.  The Norway spruce genome sequence and conifer genome evolution.

Authors:  Björn Nystedt; Nathaniel R Street; Anna Wetterbom; Andrea Zuccolo; Yao-Cheng Lin; Douglas G Scofield; Francesco Vezzi; Nicolas Delhomme; Stefania Giacomello; Andrey Alexeyenko; Riccardo Vicedomini; Kristoffer Sahlin; Ellen Sherwood; Malin Elfstrand; Lydia Gramzow; Kristina Holmberg; Jimmie Hällman; Olivier Keech; Lisa Klasson; Maxim Koriabine; Melis Kucukoglu; Max Käller; Johannes Luthman; Fredrik Lysholm; Totte Niittylä; Ake Olson; Nemanja Rilakovic; Carol Ritland; Josep A Rosselló; Juliana Sena; Thomas Svensson; Carlos Talavera-López; Günter Theißen; Hannele Tuominen; Kevin Vanneste; Zhi-Qiang Wu; Bo Zhang; Philipp Zerbe; Lars Arvestad; Rishikesh Bhalerao; Joerg Bohlmann; Jean Bousquet; Rosario Garcia Gil; Torgeir R Hvidsten; Pieter de Jong; John MacKay; Michele Morgante; Kermit Ritland; Björn Sundberg; Stacey Lee Thompson; Yves Van de Peer; Björn Andersson; Ove Nilsson; Pär K Ingvarsson; Joakim Lundeberg; Stefan Jansson
Journal:  Nature       Date:  2013-05-22       Impact factor: 49.962

5.  Performance of genomic selection in mice.

Authors:  Andrés Legarra; Christèle Robert-Granié; Eduardo Manfredi; Jean-Michel Elsen
Journal:  Genetics       Date:  2008-08-30       Impact factor: 4.562

6.  The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum.

Authors:  Aleksey V Zimin; Daniela Puiu; Richard Hall; Sarah Kingan; Bernardo J Clavijo; Steven L Salzberg
Journal:  Gigascience       Date:  2017-11-01       Impact factor: 6.524

7.  High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome.

Authors:  Annarita Marrano; Monica Britton; Paulo A Zaini; Aleksey V Zimin; Rachael E Workman; Daniela Puiu; Luca Bianco; Erica Adele Di Pierro; Brian J Allen; Sandeep Chakraborty; Michela Troggio; Charles A Leslie; Winston Timp; Abhaya Dandekar; Steven L Salzberg; David B Neale
Journal:  Gigascience       Date:  2020-05-01       Impact factor: 6.524

8.  Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Authors:  David B Neale; Jill L Wegrzyn; Kristian A Stevens; Aleksey V Zimin; Daniela Puiu; Marc W Crepeau; Charis Cardeno; Maxim Koriabine; Ann E Holtz-Morris; John D Liechty; Pedro J Martínez-García; Hans A Vasquez-Gross; Brian Y Lin; Jacob J Zieve; William M Dougherty; Sara Fuentes-Soriano; Le-Shin Wu; Don Gilbert; Guillaume Marçais; Michael Roberts; Carson Holt; Mark Yandell; John M Davis; Katherine E Smith; Jeffrey F D Dean; W Walter Lorenz; Ross W Whetten; Ronald Sederoff; Nicholas Wheeler; Patrick E McGuire; Doreen Main; Carol A Loopstra; Keithanne Mockaitis; Pieter J deJong; James A Yorke; Steven L Salzberg; Charles H Langley
Journal:  Genome Biol       Date:  2014-03-04       Impact factor: 13.583

9.  Potential of Genome-Wide Studies in Unrelated Plus Trees of a Coniferous Species, Cryptomeria japonica (Japanese Cedar).

Authors:  Yuichiro Hiraoka; Eitaro Fukatsu; Kentaro Mishima; Tomonori Hirao; Kosuke M Teshima; Miho Tamura; Miyoko Tsubomura; Taiichi Iki; Manabu Kurita; Makoto Takahashi; Atsushi Watanabe
Journal:  Front Plant Sci       Date:  2018-09-10       Impact factor: 5.753

10.  Evaluation of the efficiency of genomic versus pedigree predictions for growth and wood quality traits in Scots pine.

Authors:  Ainhoa Calleja-Rodriguez; Jin Pan; Tomas Funda; Zhiqiang Chen; John Baison; Fikret Isik; Sara Abrahamsson; Harry X Wu
Journal:  BMC Genomics       Date:  2020-11-16       Impact factor: 3.969
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