Literature DB >> 28965742

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives.

José Crossa1, Paulino Pérez-Rodríguez2, Jaime Cuevas3, Osval Montesinos-López4, Diego Jarquín5, Gustavo de Los Campos6, Juan Burgueño7, Juan M González-Camacho2, Sergio Pérez-Elizalde2, Yoseph Beyene7, Susanne Dreisigacker7, Ravi Singh7, Xuecai Zhang7, Manje Gowda7, Manish Roorkiwal8, Jessica Rutkoski9, Rajeev K Varshney10.   

Abstract

Genomic selection (GS) facilitates the rapid selection of superior genotypes and accelerates the breeding cycle. In this review, we discuss the history, principles, and basis of GS and genomic-enabled prediction (GP) as well as the genetics and statistical complexities of GP models, including genomic genotype×environment (G×E) interactions. We also examine the accuracy of GP models and methods for two cereal crops and two legume crops based on random cross-validation. GS applied to maize breeding has shown tangible genetic gains. Based on GP results, we speculate how GS in germplasm enhancement (i.e., prebreeding) programs could accelerate the flow of genes from gene bank accessions to elite lines. Recent advances in hyperspectral image technology could be combined with GS and pedigree-assisted breeding.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  genomic selection; genomic selection and genetic gains in crop breeding populations; genomic-enabled prediction accuracy; model complexity; models for genomic genotype×environment interaction

Mesh:

Year:  2017        PMID: 28965742     DOI: 10.1016/j.tplants.2017.08.011

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  226 in total

Review 1.  Omics resources and omics-enabled approaches for achieving high productivity and improved quality in pea (Pisum sativum L.).

Authors:  Arun K Pandey; Diego Rubiales; Yonggang Wang; Pingping Fang; Ting Sun; Na Liu; Pei Xu
Journal:  Theor Appl Genet       Date:  2021-01-12       Impact factor: 5.699

Review 2.  Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways.

Authors:  Anika Küken; Zoran Nikoloski
Journal:  Plant Physiol       Date:  2019-01-15       Impact factor: 8.340

3.  Deep Kernel and Deep Learning for Genome-Based Prediction of Single Traits in Multienvironment Breeding Trials.

Authors:  José Crossa; Johannes W R Martini; Daniel Gianola; Paulino Pérez-Rodríguez; Diego Jarquin; Philomin Juliana; Osval Montesinos-López; Jaime Cuevas
Journal:  Front Genet       Date:  2019-12-09       Impact factor: 4.599

4.  Incorporation of parental phenotypic data into multi-omic models improves prediction of yield-related traits in hybrid rice.

Authors:  Yang Xu; Yue Zhao; Xin Wang; Ying Ma; Pengcheng Li; Zefeng Yang; Xuecai Zhang; Chenwu Xu; Shizhong Xu
Journal:  Plant Biotechnol J       Date:  2020-09-02       Impact factor: 9.803

5.  Improving grain yield, stress resilience and quality of bread wheat using large-scale genomics.

Authors:  Philomin Juliana; Jesse Poland; Julio Huerta-Espino; Sandesh Shrestha; José Crossa; Leonardo Crespo-Herrera; Fernando Henrique Toledo; Velu Govindan; Suchismita Mondal; Uttam Kumar; Sridhar Bhavani; Pawan K Singh; Mandeep S Randhawa; Xinyao He; Carlos Guzman; Susanne Dreisigacker; Matthew N Rouse; Yue Jin; Paulino Pérez-Rodríguez; Osval A Montesinos-López; Daljit Singh; Mohammad Mokhlesur Rahman; Felix Marza; Ravi Prakash Singh
Journal:  Nat Genet       Date:  2019-09-23       Impact factor: 38.330

Review 6.  Current advances in chickpea genomics: applications and future perspectives.

Authors:  Uday Chand Jha
Journal:  Plant Cell Rep       Date:  2018-06-02       Impact factor: 4.570

7.  Extension of a haplotype-based genomic prediction model to manage multi-environment wheat data using environmental covariates.

Authors:  Sang He; Rebecca Thistlethwaite; Kerrie Forrest; Fan Shi; Matthew J Hayden; Richard Trethowan; Hans D Daetwyler
Journal:  Theor Appl Genet       Date:  2019-08-21       Impact factor: 5.699

Review 8.  Phenomics and genomics of finger millet: current status and future prospects.

Authors:  Salej Sood; Dinesh C Joshi; Ajay Kumar Chandra; Anil Kumar
Journal:  Planta       Date:  2019-04-09       Impact factor: 4.116

Review 9.  From markers to genome-based breeding in wheat.

Authors:  Awais Rasheed; Xianchun Xia
Journal:  Theor Appl Genet       Date:  2019-01-23       Impact factor: 5.699

10.  Genomic prediction with multiple biparental families.

Authors:  Pedro C Brauner; Dominik Müller; Willem S Molenaar; Albrecht E Melchinger
Journal:  Theor Appl Genet       Date:  2019-10-08       Impact factor: 5.699

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.