Literature DB >> 35449584

Local ecological divergence of two closely related stag beetles based on genetic, morphological, and environmental analyses.

Sheng-Nan Zhang1, Kôhei Kubota1.   

Abstract

The process of phenotypic adaptation to the environments is widely recognized. However, comprehensive studies integrating phylogenetic, phenotypic, and ecological approaches to assess this process are scarce. Our study aims to assess whether local adaptation may explain intraspecific differentiation by quantifying multidimensional differences among populations in closely related lucanid species, Platycerus delicatulus and Platycerus kawadai, which are endemic saproxylic beetles in Japan. First, we determined intraspecific analysis units based on nuclear and mitochondrial gene analyses of Platycerus delicatulus and Platycerus kawadai under sympatric and allopatric conditions. Then, we compared differences in morphology and environmental niche between populations (analysis units) within species. We examined the relationship between morphology and environmental niche via geographic distance. P. kawadai was subdivided into the "No introgression" and "Introgression" populations based on mitochondrial COI gene - nuclear ITS region discordance. P. delicatulus was subdivided into "Allopatric" and "Sympatric" populations. Body length differed significantly among the populations of each species. For P. delicatulus, character displacement was suggested. For P. kawadai, the morphological difference was likely caused by geographic distance or genetic divergence rather than environmental differences. The finding showed that the observed mitochondrial-nuclear discordance is likely due to historical mitochondrial introgression following a range of expansion. Our results show that morphological variation among populations of P. delicatulus and P. kawadai reflects an ecological adaptation process based on interspecific interactions, geographic distance, or genetic divergence. Our results will deepen understanding of ecological specialization processes across the distribution and adaptation of species in natural systems.
© 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

Entities:  

Keywords:  Platycerus delicatulus; Platycerus kawadai; character displacement; environmental niche; intraspecific variation; mitochondrial introgression

Year:  2022        PMID: 35449584      PMCID: PMC9013855          DOI: 10.1002/ece3.8837

Source DB:  PubMed          Journal:  Ecol Evol        ISSN: 2045-7758            Impact factor:   3.167


INTRODUCTION

How and why the diversity of life on earth increased over time are key research questions in ecology and biogeography (Blanquart et al., 2013; Cox et al., 2016; Futuyma & Antonovics, 1992; Savolainen et al., 2013; Thomas et al., 2016). Genetic and ecological speciation can occur in different parts of an ancestral species’ range in which contrasting environmental conditions lead directly or indirectly to the evolution of reproductive isolation (Faulkes et al., 2004; Rundle & Nosil, 2005; Schluter, 2001). However, genetic divergence within and among species does not always cause divergence of morphological and other phenotypic traits due to silent mutations and phenotypic convergence (Fitch, 1970; Ujvari et al., 2015). Adaptative phenotypic variation often occurs via the evolution of eco‐morphological innovations that contribute to ecological specialization in response to environmental variations or interspecific interactions (Devictor et al., 2010; Mammola et al., 2020). Therefore, evaluation of the phylogenetic constraints on traits and trait–environment relationships can elucidate the mechanisms underlying evolutionary selection and their impact on current ecological patterns. Phenotypic adaptation among environments is recognized in a wide variety of taxonomic groups (Benito Garzón et al., 2011; Ghalambor et al., 2007; Pavlek & Mammola, 2021; Xue et al., 2019). Considering adaptation via multivariate genetic and trait analyses is essential in such situations. However, comprehensive studies integrating phylogenetic, phenotypic, and ecological approaches to assessing speciation process and identifying phenotypic variations correlated with local adaptation have usually been neglected. Here, we investigated inter‐ and intraspecific relationships using genetic, morphological, and ecological data for two closely related Platycerus beetles, Platycerus delicatulus Lewis, 1883, and Platycerus kawadai Fujita and Ichikawa, 1982, to explore how local adaptation shapes their habitat preference. P. delicatulus and P. kawadai of the family Lucanidae are endemic to Japan and exhibit geographic genetic variations (Kubota et al., 2011). Both species prefer mature cool temperate deciduous broad‐leaved forests. P. delicatulus has a wide distribution across the main islands of Japan, except Hokkaido. P. kawadai appears to be endemic to central Japan (Figure 1). Both species co‐occur throughout the range of P. kawadai, although some differences in host wood preference have been observed. More specifically, P. delicatulus and P. kawadai prefer hard and dry decaying wood as their larval resources, whereas all other Platycerus species in Japan prefer soft and wet decaying wood on the forest floor. However, P. delicatulus is more abundant at lower elevations, especially on thick decaying wood, and P. kawadai tends to target thin decaying wood at higher elevations (Kubota et al., 2020). Two species would lose large portions of present suitable area under climate change (Zhang & Kubota, 2021). Phylogenetically, the two species diverged approximately 1 million years ago, and no hybridization between them has been recorded (Kubota et al., 2011; Zhu et al., 2020). P. delicatulus and P. kawadai are sister species with similar morphological and ecological attributes, such that sympatric distributions might lead to ecological divergence. Congeneric and ecologically similar species are considered good models for studies of ecological divergence, and thus these two species provide an opportunity to explore mechanisms underlying niche evolution and develop policies for insect management and conservation strategies.
FIGURE 1

Occurrence records of Platycerus delicatulus (a) and Platycerus kawadai (b) at the collection sites in Japan

Occurrence records of Platycerus delicatulus (a) and Platycerus kawadai (b) at the collection sites in Japan The present study aimed to quantify multidimensional differences among populations that may arise due to local adaptation in the closely related species P. delicatulus and P. kawadai. First, we estimated the intra‐ and interspecific evolutionary dynamics of these two species across their ranges and constructed intraspecific analysis units using integrated phylogenetic results for both species under sympatric or allopatric conditions. We then explored differences in morphology and environmental niche among the populations within each species. We examined the relationship between morphology and environmental niche via geographic distance to assess whether local adaptation may explain population differentiation.

METHODS

Molecular procedures and phylogenetic analyses

This study focused on P. delicatulus and P. kawadai individuals collected from 2005 to 2020 for genetic analysis across the entire geographic range of these two species (Figure 1). The collection sites of the two species are listed in Appendix 1. Besides, Platycerus akitaorum Imura, 2007, and Platycerus sugitai Okuda & Fujita, 1987, were used as outgroups. In this study, we determined 94 and 45 sequences of the mitochondrial cytochrome oxidase subunit I (COI) gene and nuclear internal transcribed spacer (ITS) region, respectively (Appendix 2). Genomic DNA was extracted from the testis or muscle tissues of adult beetles or larvae preserved in absolute ethyl alcohol using the Wizard Genomic DNA Purification kit (Promega). We amplified fragments of the COI gene (primers C1‐J‐2183 and L2‐N‐3014, Simon et al., 1994) and ITS region (primers 5.8S38F and ITS4col, Tanahashi & Hawes, 2016) to explore the phylogenetic relationships within and between the two species. COI was amplified by polymerase chain reaction (PCR) at 94°C for 3 min, followed by 30 cycles of 94°C for 1 min, 48°C for 1 min, and 72°C for 1 min, and a final extension for 7 min at 72°C. The ITS region was amplified using the same process, but with an annealing temperature of 50°C. The PCR products were purified using the Illustra ExoStar Clean‐Up kit (GE Healthcare). Additionally, we used 65 COI and 5 ITS sequences for P. delicatulus and P. kawadai, and 9 COI and 2 ITS sequences for the outgroup (P. akitaorum and P. sugitai) from previous studies (Kubota et al., 2010, 2011; Zhu et al., 2020). In total, we used 168 COI and 52 ITS sequences for analysis. The best‐fit substitution model for COI and the ITS region were selected using jModelTest v.2.1.10 (Darriba et al., 2012) based on the Akaike information criterion (AIC). Bayesian interference (BI) trees were constructed using MrBayes v.3.2.7 (Ronquist et al., 2012) for 100 million generations (sample frequency = 50,000) with Tracer v.1.7.1 (Rambaut et al., 2018). After discarding the first 10% of samples as burn‐in, majority‐rule consensus (MRC), trees were constructed by the sumt function in MrBayes. The final tree was visualized using FigTree v.1.4.2 (Rambaut, 2016). Maximum‐likelihood (ML) trees were constructed using RAxML v.8.2.9 (Stamatakis, 2016) with the best‐fit substitution model selected using 1000 bootstrap replications. Divergence times were estimated using BEAST v.2.6.2 based on the strict molecular clock with a substitution rate of 1.77% per lineage in million years (Myr) for COI (Papadopoulou et al., 2010). The data consisted of only in‐group taxa, and the topology was fixed to the ML tree. Markov Chain Monte Carlo analysis was performed using 10 million generations, sampling every 1000 generations. The convergence of the chains was confirmed using Tracer v.1.7.1. After discarding 10% of samples as burn‐in, samples from the posterior distributions were summarized on a maximum clade credibility tree using TreeAnnotator v.1.10.5. FigTree v.1.4.2 was used to visualize the resulting tree. Based on the molecular analysis results, we subdivided the populations of P. kawadai into two analysis units (see RESULTS). For P. delicatulus, we focused on one COI clade containing populations sympatric with P. kawadai, and subdivided this clade into two analysis units (i.e., sympatric or allopatric with P. kawadai).

Morphological analysis

For the morphological analysis, we assessed morphological external differentiation of P. delicatulus (central‐to‐northern Honshu) and P. kawadai specimens collected from 2005 to 2020, which were deposited in the Forest Zoology Laboratory of the University of Tokyo. We focused on external body size and shape using traits related to ecological specialization. Those selected morphological traits in this study are often associated with adaptation process as demonstrated by published literature (Hagge et al., 2021; Konuma et al., 2013; Okada & Miyatake, 2009). We firstly captured video images of specimens in dorsal view using a DP12 digital camera (Olympus, Tokyo) attached to an SZ10 stereoscopic microscope (Olympus). Then, we measured the eight morphological traits illustrated in Figure 2 from each habitus image using Photoshop software (Adobe, San Jose, CA) on a personal computer. We measured the trait lengths of adult beetles, including 213 specimens (111 males and 102 females) of P. delicatulus (23 sites for male and 24 sites for female) and 253 specimens (142 males and 113 females) of P. kawadai (26 sites for male and 22 sites for female).
FIGURE 2

The eight investigated morphological traits investigated in this study. All traits were measured on the right side of the beetle's body, with the left side measured only when body parts were damaged or missing

The eight investigated morphological traits investigated in this study. All traits were measured on the right side of the beetle's body, with the left side measured only when body parts were damaged or missing To obtain a general view of the morphological differences among the populations, we first log‐transformed all trait measurements and performed a principal components analysis (PCA) using the procomp function in R v.3.6.3 (R Core Team, 2013) and visualized the results using “ggplot2” (Wickham & Wickham, 2007). To examine whether the two species differed in their morphological traits, we compared the principal component (PC) 1 and PC2 between two populations for each sex of each species. Then, we tested for body length (BL) differences between and within species and between the sexes using analysis of variance (ANOVA) and Tukey's HSD post hoc tests; BL was used as the measure for analysis, as it provides greater reproducibility than an axis derived from PCA (Barton et al., 2011). For genital morphology, although we observed little difference in endophallic structure between P. delicatulus and P. kawadai (Figure 3), which may be concerning for reproductive isolation, we found no difference among populations within each species. Quantitatively assessing the membranous part of the endophallus is difficult, so we did not consider genital morphological variation.
FIGURE 3

Male genital endophallus of Platycerus delicatulus (a, c) and P. kawadai (b, d). Membranous parts are endophalli. (a, b), Right lateral view; (c, d), right subdorsal view; scale, 1 mm

Male genital endophallus of Platycerus delicatulus (a, c) and P. kawadai (b, d). Membranous parts are endophalli. (a, b), Right lateral view; (c, d), right subdorsal view; scale, 1 mm

Environmental analysis

Environmental data were downloaded from the Worldclim database (v.1.4; http://www.worldclim.org; Hijmans et al., 2005) at a resolution of 30 arc seconds. A total of 99 occurrences of nonduplicated records (55 for P. delicatulus and 44 for P. kawadai) were obtained from field surveys and previous research (Zhang & Kubota, 2021). Next, we extracted 19 bioclimatic variables for each sampling location and tested multicollinearity among these variables. We excluded bioclimatic variables with a Pearson's correlation coefficient |r| > .8. Accordingly, we retained six climatic variables for subsequent analysis: Elevation (Ele), isothermality (Bio3), temperature seasonality (Bio4), mean temperature of wettest quarter (Bio8), annual precipitation (Bio12), and precipitation of coldest quarter (Bio19) (Tables 1 and 2).
TABLE 1

Summary of environmental variables used in this study

CodeEnvironmental variablesUnit
EleElevationm
Bio3Isothermality
Bio4Temperature seasonality
Bio8Mean temperature of the wettest quarter°C
Bio12Annual precipitationmm
Bio19Precipitation of coldest quartermm
TABLE 2

Correlation for the environmental variables associated with Platycerus occurrence sites

Bio3Bio4Bio8Bio12Bio19
Ele0.75−0.45−0.110.21−0.53
Bio31−0.640.03−0.06−0.73
Bio41−0.34−0.330.28
Bio810.090.01
Bio1210.37
Bio191
Summary of environmental variables used in this study Correlation for the environmental variables associated with Platycerus occurrence sites To quantify the environmental niches of P. delicatulus and P. kawadai populations, we used two statistical approaches. First, PCA was performed on the environmental variables using procomp function in R v.3.6.3 (R Core Team, 2013) and visualized using “ggplot2” (Wickham & Wickham, 2007). Second, we compared the environmental niche spaces of the species using n‐dimensional hypervolumes analyses (Hutchinson, 1957), which were conducted using the “hypervolume” R package (Blonder et al., 2018). We constructed the hypervolumes using the six retained variables for the major populations. All environmental variables were natural log‐transformed for analysis. All hypervolumes were created using the Gaussian kernel density estimator method with the default Silverman bandwidth estimator (Blonder et al., 2014, 2018). To compare hypervolumes among environmental variables, we quantified the pairwise overlap between populations, using the Jaccard and Sorensen similarity indexes following Blonder et al. (2018).

Correlations between morphology and environmental niche

We conducted Mantel tests and partial Mantel tests using the “vegan” R package to test correlation between the morphological and environmental distances of P. delicatulus and P. kawadai (Oksanen et al., 2013). Morphological distance was calculated as the Euclidean pairwise distance of BL between localities because BL is considered as an important trait for resource competition and reproductive interference (Okuzaki, 2021; Takami & Sota, 2007). Geographic distance was assessed as the Euclidean distance of latitude and longitude between localities. For environmental distance, we firstly scaled the six environmental variables prior to creating a distance matrix using scale function, because the environmental variables were all measured using different metrics that are not comparable to each other. Then, we calculated Euclidean pairwise distance of the environmental variables between sites using dist function (Oksanen et al., 2019). Finally, the significances between the geographic distance and morphological distance or between environmental and morphological distance were assessed by running 10,000 permutations. The partial Mantel test was used to determine whether morphological distance was correlated with environmental distance while controlling for the effect of geographic distance (Morpho, Env | Geo) based on Pearson correlation coefficients. Regression analysis was used to describe the relationship of the residual morphological values vs. residual geographic values and residual morphological values vs. residual environmental values for populations of each species.

RESULTS

Phylogenetic relationship between species

We sequenced 784 bp of the COI gene and 730–732 bp of the ITS region. These sequences were deposited in GenBank (DDBJ accession numbers: LC651809–LC651901 for the COI gene, and LC651902–LC651946 for the ITS region). The best‐fit models were GTR + I + G for COI and GTR + G for the ITS region. Based on the ITS region, P. delicatulus and P. kawadai constitute an independent distant monophyletic group, which aligned with the morphologically identified species units. P. delicatulus was subdivided into a Honshu and Shikoku population and a Kyushu population (Figure 4).
FIGURE 4

Consensus tree based on majority rule (>50%) of Bayesian inference (BI) tree for Platycerus delicatulus and Platycerus kawadai in Japan based on ITS sequences. Platycerus akitaorum and Platycerus sugitai were used as the outgroup. Operational taxonomic units indicate the combination of “species” and “site number (number of individuals sharing the same haplotype)”. Numbers near the branches indicate nodal support (posterior probability in the BI tree [> 50%] and bootstrap probability in the maximum‐likelihood (ML) tree [> 50%])

Consensus tree based on majority rule (>50%) of Bayesian inference (BI) tree for Platycerus delicatulus and Platycerus kawadai in Japan based on ITS sequences. Platycerus akitaorum and Platycerus sugitai were used as the outgroup. Operational taxonomic units indicate the combination of “species” and “site number (number of individuals sharing the same haplotype)”. Numbers near the branches indicate nodal support (posterior probability in the BI tree [> 50%] and bootstrap probability in the maximum‐likelihood (ML) tree [> 50%]) Two major clades were obtained based on the COI gene (Figure 5). Clade I was composed of entirely of P. kawadai, whereas Clade II contained both species. Clade II‐a‐1 composed of P. kawadai based on morphology and was assumed to contain the offspring of a population that receive mitochondrial genes from P. delicatulus via the introgressive hybridization. Clades II‐a‐2, II‐a‐3, and II‐b were composed mainly of P. delicatulus. However, a male P. kawadai collected at Site 97 was in Clade II‐a‐2, whereas another individual from that site belonged to Clade I (Figure 5).
FIGURE 5

Consensus tree based on majority rule (>50%) of Bayesian inference (BI) tree for Platycerus delicatulus and Platycerus kawadai in Japan based on COI sequences. Platycerus akitaorum and Platycerus sugitai were used as the outgroup. Operational taxonomic units indicate the combination of “species” and “site number (number of individuals sharing the same haplotype).” Numbers near the branches indicate nodal support (posterior probability in the BI tree [> 50%] and bootstrap probability in the maximum‐likelihood (ML) tree [> 50%])

Consensus tree based on majority rule (>50%) of Bayesian inference (BI) tree for Platycerus delicatulus and Platycerus kawadai in Japan based on COI sequences. Platycerus akitaorum and Platycerus sugitai were used as the outgroup. Operational taxonomic units indicate the combination of “species” and “site number (number of individuals sharing the same haplotype).” Numbers near the branches indicate nodal support (posterior probability in the BI tree [> 50%] and bootstrap probability in the maximum‐likelihood (ML) tree [> 50%]) The divergence times of P. delicatulus and P. kawadai populations were estimated based on the COI gene (Figure 6). The estimated divergence time between Clades I and II (representing the speciation between P. delicatulus and P. kawadai) was 1.16 Mya. Clade II was subdivided into Clade II‐a (generally, P. delicatulus: Honshu, Shikoku, and northern Kyushu) and Clade II‐b (P. delicatulus: southern Kyushu) at 0.96 Mya. The introgressive hybridization that was the origin of Clade II‐a‐1 occurred approximately 0.74 Mya. In the recent past, an introgressive hybridization occurred at Site 97 (Figures 5 and 6).
FIGURE 6

Divergence time estimates of Platycerus delicatulus and Platycerus kawadai in a time‐calibrated tree based on the COI gene. Numbers and squares near the divergence points indicate divergence times and their 95% confidence intervals, respectively

Divergence time estimates of Platycerus delicatulus and Platycerus kawadai in a time‐calibrated tree based on the COI gene. Numbers and squares near the divergence points indicate divergence times and their 95% confidence intervals, respectively For subsequent analyses, in the context of the interspecific relationship and intraspecific divergence, we subdivided P. kawadai populations into two analysis units: “No introgression” population (Clade I) and “Introgression” population (Clade II‐a‐1) based on the molecular results. In this classification, we excluded the population at Site 97 with a P. kawadai sample exhibiting the introgression type for COI gene from P. delicatulus. It is a very rare case because all other samples from the same mountain range (Akaishi Mountains) including Site 97 exhibited no introgression type. Sites at which no genetic samples were collected were assigned to the category of the closest site at which genetic samples were collected. We subdivided P. delicatulus populations belonging to Clade II‐a‐2 into “Sympatric” population and “Allopatric” population. Sympatric population range covers whole range of P. kawadai, whereas both species cannot be always collected at the same site (Figure 1, Appendix 1). In the following part, we examined the morphological differentiation among these analysis units of two species.

Morphological differentiation

Examinations of morphological variation in eight traits by PCA indicated differentiation between Allopatric and Sympatric populations of P. delicatulus, as well as between No introgression and Introgression populations of P. kawadai mainly along the PC1 axis (Figure 7). Specifically, male and female populations of P. delicatulus were mainly discriminated by the first principal component (PC1), which explained 69.92% and 62.07% of the variance, respectively. For P. kawadai, PC1 explained 70.79% and 55.94% of the total variance for male and female, respectively. The significant difference between the populations in PC2 was detected only for P. delicatulus males (Figure 8). In this case, the eigenvalue of PC2 was 0.71 and the highest loading score for PC2 was 0.68 of head length (HL) (Table 3). PC2 and HL could not sufficiently explain the morphological differentiation between the populations. On the other hand, the significant difference between populations in PC1 was detected for most studied species and sexes except for P. kawadai males (Figure 8). BL exhibited the highest loading scores on the first axis PC1 (0.95–0.97) in both species and sexes (Tables 3 and 4). Additionally, BL showed a significant level of differentiation between Allopatric and Sympatric populations of P. delicatulus, as well as between No introgression and Introgression populations of P. kawadai for both male and female individuals (p < .001, ANOVA; Figure 9), but we found no significant differentiation in BL between Allopatric populations of P. delicatulus and Introgression populations of P. kawadai for males (Figure 9a). On the other hand, female BL varied significantly between the two species (Figure 9b). Sympatric population of P. delicatulus and No introgression population of P. kawadai showed the highest and lowest value, respectively (Figure 9).
FIGURE 7

Principal component analysis plots of morphological data showing differentiation between populations of Platycerus delicatulus and Platycerus kawadai. Ellipses represent the 95% confidence intervals

FIGURE 8

Morphological differentiation between populations along the first two principal components (PC1, a–d; PC2, e–h) for Platycerus delicatulus male (a, e) and female (b, f) individuals, and P. kawadai male (c, g) and female (d, h) individuals. Student's t‐test results are also shown. *, p < .05; **, p < .01; ***, p < .001

TABLE 3

Principal component analysis (PCA) loading scores for morphological traits used to evaluate the morphological differentiation for males of Platycerus delicatulus

Morphological traitsMaleFemale
PC1PC2PC1PC2
Head width (HW)0.93−0.100.83−0.05
Pronotum width (PW)0.94−0.160.94−0.11
Elytra width (EW)0.75−0.220.81−0.15
Head length (HL)0.630.680.410.72
Pronotum length (PL)0.91−0.150.860.01
Elytra length (EL)0.650.360.92−0.17
Body length (BL) 0.95 −0.09 0.96 −0.06
Mandible length (ML)0.86−0.030.210.83
Eigenvalue5.590.714.971.28
% of variance69.928.8662.0716.02

The trait that contributed the most is highlighted in bold on PC1.

TABLE 4

Principal component analysis (PCA) loading scores for morphological traits used to evaluate the morphological differentiation of Platycerus kawadai

Morphological traitsMaleFemale
PC1PC2PC1PC2
Head width (HW)0.880.320.680.31
Pronotum width (PW)0.92−0.100.91−0.15
Elytra width (EW)0.68−0.570.78−0.33
Head length (HL)0.800.180.480.68
Pronotum length (PL)0.86−0.130.78−0.12
Elytra length (EL)0.89−0.190.88−0.21
Body length (BL) 0.97 −0.07 0.96 −0.03
Mandible length (ML)0.680.600.180.85
Eigenvalue5.660.874.471.48
% of variance70.7910.9655.9418.49

The trait that contributed the most is highlighted in bold on PC1.

FIGURE 9

Morphological differentiation between populations with respect to variations in body length (BL) for both male (a) and female (b) individuals. Analysis of variance (ANOVA) results are also shown. Different letters indicate significant differences between populations (Tukey's test: p < .05)

Principal component analysis plots of morphological data showing differentiation between populations of Platycerus delicatulus and Platycerus kawadai. Ellipses represent the 95% confidence intervals Morphological differentiation between populations along the first two principal components (PC1, a–d; PC2, e–h) for Platycerus delicatulus male (a, e) and female (b, f) individuals, and P. kawadai male (c, g) and female (d, h) individuals. Student's t‐test results are also shown. *, p < .05; **, p < .01; ***, p < .001 Principal component analysis (PCA) loading scores for morphological traits used to evaluate the morphological differentiation for males of Platycerus delicatulus The trait that contributed the most is highlighted in bold on PC1. Principal component analysis (PCA) loading scores for morphological traits used to evaluate the morphological differentiation of Platycerus kawadai The trait that contributed the most is highlighted in bold on PC1. Morphological differentiation between populations with respect to variations in body length (BL) for both male (a) and female (b) individuals. Analysis of variance (ANOVA) results are also shown. Different letters indicate significant differences between populations (Tukey's test: p < .05)

Environmental niche

For P. delicatulus, we found the PCA results suggested that Sympatric population had a narrower environmental space than that of Allopatric population, especially in terms of elevation, temperature seasonality (Bio4), and mean temperature in wettest quarter (Bio8) (Figure 10a; Table 5). Two principal components (PC) explained 44.6% (PC1) and 29.28% (PC2) of the variation between populations of P. delicatulus. For P. kawadai, two primary principal components (PC) accounted for 47.2% (PC1) and 26.8% (PC2) of the total variance (Figure 10b). No introgression population exhibited higher temperature seasonality and lower mean temperature of wettest quarter, favoring less precipitation (Bio12 and Bio19) and a wider elevation compared with the Introgression population of P. kawadai (Table 5).
FIGURE 10

Principal component analysis (PCA) plots of environmental variables (see Table 1) showing differentiation between populations of Platycerus delicatulus (a) and Platycerus kawadai (b). Ellipses represent the 95% confidence intervals

TABLE 5

Principal component analysis (PCA) loading scores for environmental predictors used to evaluate the environmental niche for Platycerus delicatulus

Environmental predictors P. delicatulus P. kawadai
PC1PC2PC1PC2
Elevation (Ele)−0.590.74−0.770.55
Isothermality (Bio3) 0.95 −0.03−0.35−0.50
Temperature seasonality (Bio4)0.780.51 −0.83 0.15
Mean temperature of the wettest quarter (Bio8)0.07 −0.96 0.52 −0.74
Annual precipitation (Bio12)−0.11−0.130.700.50
Precipitation of coldest quarter (Bio19)0.890.080.810.49
Eigenvalues2.681.762.831.60
% of variance44.6029.2847.2026.80

The predictor that contributed the most is highlighted in bold on each axis.

Principal component analysis (PCA) plots of environmental variables (see Table 1) showing differentiation between populations of Platycerus delicatulus (a) and Platycerus kawadai (b). Ellipses represent the 95% confidence intervals Principal component analysis (PCA) loading scores for environmental predictors used to evaluate the environmental niche for Platycerus delicatulus The predictor that contributed the most is highlighted in bold on each axis. The multidimensional variations in the environmental space of both species are shown as niche hypervolumes in Figures 11 and 12, illustrating that the populations occupied different ecological spaces with relatively little overlap. For P. delicatulus, the niche hypervolume was much greater for the Allopatirc population than for the Sympatric population, and they overlapped slightly (Sørensen similarity = 0.057, Jaccard similarity = 0.029; Figure 11). For P. kawadai, the Sørensen and Jaccard similarity index values of the hypervolumes were 0.135 and 0.072 in No introgression and Introgression populations, respectively. Generally, Bio4 did not overlapped between the populations (Figure 12).
FIGURE 11

Hypervolumes obtained from multidimensional kernel density estimation of the studied population (Allopatric and Sympatric population) of Platycerus delicatulus based on weakly correlated environmental variables. The larger colored dots represent species centroids

FIGURE 12

Hypervolumes obtained from multidimensional kernel density estimation of the studied population (Allopatric and Sympatric population) of Platycerus kawadai based on weakly correlated environmental variables. The larger colored dots represent species centroids

Hypervolumes obtained from multidimensional kernel density estimation of the studied population (Allopatric and Sympatric population) of Platycerus delicatulus based on weakly correlated environmental variables. The larger colored dots represent species centroids Hypervolumes obtained from multidimensional kernel density estimation of the studied population (Allopatric and Sympatric population) of Platycerus kawadai based on weakly correlated environmental variables. The larger colored dots represent species centroids

Correlation between morphological and environmental niche

For P. delicatulus, simple Mantel tests showed that the morphological distance between populations was not significantly correlated with environmental (male, p = .104; female, p = .283) or geographic distances (male, p = .119; female, p = .315) (Table 6). Morphological distance was not related with environmental distance after controlling for the effect of geographic distance (male, p = .102; female, p = .241, Figure 13a,c) and with geographic distance after controlling for environmental distance (male, p = .608; female, p = .588, Figure 13b,d) based on the partial Mantel test results. On the other hand, for P. kawadai, morphological distance was significantly correlated with the environmental (male, p = .005; female, p = .03) and geographic distances (male, p < .001; female, p = .003) (Table 6). Morphological distances were not significantly correlated with environmental distances after controlling for geographic distances using partial Mantel tests for P. kawadai (male, p = .470; female, p = .698, Figure 14a,c), however, morphological distance was significantly correlated with geographic distances after controlling for environmental distance in the same manner (male, p < .001; female, p = .010, Figure 14b,d).
TABLE 6

Single and partial Mantel test results based on morphological, environmental, and geographic distances between occurrence sites of Platycerus delicatulus and P. kawadai

ComparisonSex P. delicatulus P. kawadai
r p‐Value r p‐Value
Single Mantel tests
Morphological and environmentalMales.160.104.170.006
Females.048.283.331.007
Morphological and geographicMales.062.119.469 <.001
Females.024.315.249.003
Partial Mantel tests
Morphological and environmental | geographicMales.170.102.009.470
Females.058.241.059.698
Morphological and geographic | environmentalMales.059.608.443 <.001
Females.032.588.316.010

Bold values denote statistical significance at the p < .05 level.

FIGURE 13

Partial regression plots illustrating the relationship between morphological distance and the environmental distance controlling geographic distance (a and c), and between morphological distance and geographic distance controlling for environmental distance (b and d) for male and female of Platycerus delicatulus, respectively

FIGURE 14

Partial regression plots illustrating the relationship between morphological distance and the environmental distance controlling geographic distance (a and c), and between morphological distance and geographic distance controlling for environmental distance (b and d) for male and female of Platycerus kawadai, respectively. Lines represent significant regressions of the residuals

Single and partial Mantel test results based on morphological, environmental, and geographic distances between occurrence sites of Platycerus delicatulus and P. kawadai Bold values denote statistical significance at the p < .05 level. Partial regression plots illustrating the relationship between morphological distance and the environmental distance controlling geographic distance (a and c), and between morphological distance and geographic distance controlling for environmental distance (b and d) for male and female of Platycerus delicatulus, respectively Partial regression plots illustrating the relationship between morphological distance and the environmental distance controlling geographic distance (a and c), and between morphological distance and geographic distance controlling for environmental distance (b and d) for male and female of Platycerus kawadai, respectively. Lines represent significant regressions of the residuals

DISCUSSION

Phylogeographic history of the two related species

The genetic sample collection sites of the two species cover almost their entire distribution ranges (Appendix 2). Phylogenetic analyses based on the ITS region suggested that P. delicatulus and P. kawadai are each essentially monophyletic (Figure 4). This result aligns with the phylogenetic results of their yeast symbionts (Kubota et al., 2020). Since the ancestral branches of P. delicatulus diverged in western Japan, it is likely that the two species were separated and speciated in western (P. delicatulus) and central (P. kawadai) Japan approximately 1.16 Mya (Figures 5 and 6). Following that speciation event, P. delicatulus was separated into two clades (Clade II‐a: Honshu, Shikoku, and northern Kyushu; and Clade II‐b: southern Kyushu in COI) approximately 0.96 Mya. The Clade II‐a population of P. delicatulus expanded eastward, and hybridized with P. kawadai after 0.74 Mya, which resulted in portion of P. kawadai forming a clade (Clade II‐a‐1: Introgression population) nested within the P. delicatulus clade (Clade II). Since then, introgressive hybridization appears to have occurred very rarely between the two species (Figures 5 and 6). Moreover, in terms of the direction of introgression, morphological similarity may have resulted in a relatively higher probability of introgression from P. delicatulus to P. kawadai than in the reverse direction. P. delicatulus females and P. kawadai males may occasionally mate with each other because females of P. delicatulus have a larger body size than P. kawadai and mitochondrial genes are maternally inherited only. Based on our observation, males of Platycerus species always try to mate immediately with any female during the reproductive season. When there is a chance of heterospecific mating, interspecific differences in body size and genitalia size may work as premating and mechanical isolation mechanisms, respectively (Kubota & Sota, 1998; Takami & Sota, 2007; Okuzaki, 2021). A similar phylogeographic pattern has been documented in other beetles (Kosuda et al., 2016; Takami et al., 2007; Zhang & Sota, 2007). These results indicated that No introgression population and Introgression population of P. kawadai differed mainly in terms of COI, but they cannot be distinguished using ITS sequences. Possible explanations for the mitochondrial–nuclear discordance could be associated with sex‐biased dispersal, mating, and offspring production (Bonnet et al., 2017). Genetic drift is ubiquitous in populations and can interact with many of the above processes to increase discordance between mitochondrial and nuclear genes (Toews & Brelsford, 2012). But it is difficult to explain the essential topological difference between the COI and ITS phylogenies just for these reasons. Another possible evolutionary scenario for such a discordance is the incomplete lineage sorting following the ancestral polymorphism of mitochondrial gene (Funk & Omland, 2003). However, it is unlikely that the ancestor of P. kawadai had possessed both mitochondrial Clades I and II‐a‐1 because Clade II‐a‐1 had occurred in a P. delicatulus type subclade (Clade II‐a) after initial geographical differentiation within P. delicatulus. An alternative and more likely scenario is historical mitochondrial introgression following the range expansion of these species. Because Clade II‐a‐1 was diverged from a P. delicatulus type clade around 0.74 Mya, the replacement by an introgressive clade seems to be very rare and only one replacement is recognized.

Factors affecting morphological differences among Platycerus populations within species

In this study, we constructed intraspecific analysis units of two Platycerus species based on interspecific ranges and evolutionary dynamics, and then evaluated the factors affecting the morphological differences within each species. Among the eight morphological traits shown in Figure 3, BL was the most effective variable for explaining morphological variation (Figure 7). Meanwhile, the results of the n‐dimensional hypervolume analysis revealed environmental heterogeneity among populations. We tested whether the morphological variation across populations was better explained by geographic distance with dispersal or by environmental filtering for studied species. For P. delicatulus, the morphological (BL) distance among collection sites was not correlated with environmental factors or with geographic distance, and therefore these factors could not explain the morphological divergence between Allopatric and Sympatric populations. The latter population is larger than the former, and likely arose via character displacement against P. kawadai (Figure 9). As P. delicatulus and P. kawadai are capable of mating, the putative character displacement may be caused by reproductive interference other than the resource competition. Overall, our results suggest that interspecific interaction has played a major role in driving the morphological differentiation of P. delicatulus populations. For P. kawadai, morphological distance was correlated with geographic distance after controlling for environmental distance (Table 6). This result suggests that geographic distance (i.e., low dispersal ability) might have led to morphological differentiation. Therefore, dispersal is assumed to drive the morphological diversification of populations. Meanwhile, dispersal ability could influence range limits and gene flow among populations, which may be associated with niche differentiation. In addition, previous studies showed that morphological adaptation to local ecology can also have resulted from phenotypic plasticity or from genetic differences among populations (Borokini et al., 2021; Ghalambor et al., 2007; Kunz et al., 2022; Price et al., 2003; Schmid & Guillaume, 2017). Although phenotypic plasticity has been documented in response to variations in multiple environmental variables (Chevin & Lande, 2015; Gratani, 2014; Lande, 2009; Wang et al., 2021), we found morphological distance was not correlated with environmental distance after controlling for geographic distance (Table 6). Thus, environmental factors are unlikely to be responsible for the observed morphological differentiation in P. kawadai. However, we cannot exclude the possibility that genetic divergence, such as that achieved via genetic drift and intra‐ and interspecific gene flow, promoted the morphological divergence. Further studies are required to verify whether this possibility would explain the morphological differentiation among populations of P. kawadai. Populations often experience different environmental conditions, leading to the evolution of different phenotypes to maximize fitness (Freudiger et al., 2021; Jones et al., 2021). Most studies have shown that body size is affected by environmental filtering and food availability, which exhibit trade‐off relationships (Dmitriew, 2011; Konuma et al., 2011; Runemark et al., 2015). Our results showed that intraspecific morphological variations in P. delicatulus and P. kawadai were related to interspecific interaction and geographic distance, respectively. These results indicated divergence between populations in directions of morphological variation and provided significant insights into species adaptation processes. In conclusion, we integrated morphological, environmental, and molecular data across the geographic ranges of two species to investigate the ecological–evolutionary processes that may drive divergence processes among populations and across geography. We found that morphological and ecological niche differentiation within species may be driven by interspecific interaction, as well as dispersal ability. These differentiations may associate with specialization for habitat preference. Our results elucidate ecological process across species’ distributions through adaptation and plasticity in natural systems. Evidence of divergence between populations provides a useful reference for conservation strategies to enhance potential for adaptive response to the challenging climate changes.

CONFLICT OF INTERESTS

The authors declare no conflict of interest.

AUTHOR CONTRIBUTIONS

Sheng‐Nan Zhang: Conceptualization (lead); Data curation (equal); Formal analysis (lead); Investigation (equal); Methodology (lead); Writing – original draft (lead); Writing – review & editing (supporting). Kôhei Kubota: Conceptualization (supporting); Data curation (equal); Formal analysis (supporting); Funding acquisition (lead); Investigation (equal); Methodology (supporting); Project administration (lead); Resources (lead); Supervision (lead); Writing – original draft (supporting); Writing – review & editing (lead).
SpeciesAnalysis unitElevation (m)Latitude (°)(°)Site No.
P. delicatulus Allopatric37041.15140.381
P. delicatulus Allopatric70040.50140.832
P. delicatulus Allopatric41040.49140.933
P. delicatulus Allopatric43040.51140.974
P. delicatulus Allopatric100038.52139.735
P. delicatulus Allopatric70038.28140.466
P. delicatulus Allopatric64038.48140.017
P. delicatulus Allopatric74038.53139.968
P. delicatulus Allopatric46038.21139.859
P. delicatulus Allopatric88038.14140.5110
P. delicatulus Allopatric100037.06139.4811
P. delicatulus Allopatric80037.09139.5912
P. delicatulus Allopatric96036.93140.2813
P. delicatulus Allopatric130036.87139.4014
P. delicatulus Allopatric128036.75139.4415
P. delicatulus Allopatric90036.75138.8316
P. delicatulus Allopatric122036.67138.6717
P. delicatulus Allopatric113036.48138.8818
P. delicatulus Allopatric130036.77138.8219
P. delicatulus Allopatric110036.85137.8320
P. delicatulus Allopatric125036.38137.7521
P. delicatulus Allopatric132036.14136.7322
P. delicatulus Allopatric103035.52136.4123
P. delicatulus Allopatric55034.46136.2424
P. delicatulus Allopatric141034.38136.0925
P. delicatulus Allopatric130034.35136.2126
P. delicatulus Allopatric120034.32136.2027
P. delicatulus Allopatric120034.21136.1228
P. delicatulus Allopatric152034.19136.1029
P. delicatulus Allopatric115034.22135.9830
P. delicatulus Allopatric125033.90135.6531
P. delicatulus Allopatric125034.15135.6532
P. delicatulus Allopatric69035.35135.7433
P. delicatulus Sympatric126036.41138.6734
P. delicatulus Sympatric140036.20138.6435
P. delicatulus Sympatric130035.94138.8036
P. delicatulus Sympatric110035.91138.8237
P. delicatulus Sympatric78035.92138.8438
P. delicatulus Sympatric142035.85138.9839
P. delicatulus Sympatric145035.74139.0240
P. delicatulus Sympatric121035.48139.1741
P. delicatulus Sympatric156735.47139.1642
P. delicatulus Sympatric158735.51139.0743
P. delicatulus Sympatric140035.51139.0544
P. delicatulus Sympatric157035.69138.8845
P. delicatulus Sympatric110035.78138.7746
P. delicatulus Sympatric120035.86138.5647
P. delicatulus Sympatric155035.38138.5348
P. delicatulus Sympatric142035.32138.3649
P. delicatulus Sympatric148036.90138.4950
P. delicatulus Sympatric124036.41138.6051
P. delicatulus Sympatric155035.39137.9952
P. delicatulus Sympatric162035.13138.0453
P. delicatulus Sympatric118035.23137.9954
P. delicatulus Sympatric126035.12137.9055
P. delicatulus (Others)105035.25134.3956
P. delicatulus (Others)110035.19133.8257
P. delicatulus (Others)97035.35133.5458
P. delicatulus (Others)110034.69132.1959
P. delicatulus (Others)108034.50132.1360
P. delicatulus (Others)122033.92134.3461
P. delicatulus (Others)112033.91134.2962
P. delicatulus (Others)103033.92134.2963
P. delicatulus (Others)122033.88134.1164
P. delicatulus (Others)132033.87134.0965
P. delicatulus (Others)114033.94132.9466
P. delicatulus (Others)143033.75133.1567
P. delicatulus (Others)148033.48133.0268
P. delicatulus (Others)115033.19132.6169
P. delicatulus (Others)96033.48130.9370
P. delicatulus (Others)74033.46130.9171
P. delicatulus (Others)110033.28131.4072
P. delicatulus (Others)88033.12131.2973
P. delicatulus (Others)162032.58131.1174
P. delicatulus (Others)125032.16130.9375
P. delicatulus (Others)140032.30131.4376
P. delicatulus (Others)132032.28131.4377
P. delicatulus (Others)125031.94130.8578
P. delicatulus (Others)70033.00130.0779
P. delicatulus (Others)90032.98130.0980
P. delicatulus (Others)97032.96130.0881
P. delicatulus (Others)120032.76130.2982
P. kawadai No introgression140036.44138.6483
P. kawadai No introgression126036.41138.6734
P. kawadai No introgression140036.20138.6435
P. kawadai No introgression130035.94138.8036
P. kawadai No introgression112035.91138.8237
P. kawadai No introgression149035.90138.9584
P. kawadai No introgression140035.87139.0985
P. kawadai No introgression140035.71138.8386
P. kawadai No introgression155035.56138.7587
P. kawadai No introgression156935.42138.6988
P. kawadai No introgression155035.38138.5348
P. kawadai No introgression148035.32138.3549
P. kawadai No introgression140035.64138.3589
P. kawadai No introgression133036.91138.4850
P. kawadai No introgression135036.11138.6590
P. kawadai No introgression130036.31138.0891
P. kawadai No introgression155035.39137.9952
P. kawadai No introgression150035.57138.1292
P. kawadai No introgression160035.57138.0893
P. kawadai No introgression164035.55138.0994
P. kawadai No introgression160035.44137.9695
P. kawadai No introgression160035.20137.9896
P. kawadai No introgression160035.24137.9697
P. kawadai No introgression126035.12137.9098
P. kawadai Introgression146035.52138.9799
P. kawadai Introgression124035.44139.23100
P. kawadai Introgression121035.48139.1741
P. kawadai Introgression156735.47139.1642
P. kawadai Introgression160035.48139.10101
P. kawadai Introgression158735.51139.0743
P. kawadai Introgression167335.49139.14102
P. kawadai Introgression129235.48139.03103
P. kawadai Introgression140035.51139.0544
P. kawadai Introgression137935.46138.98104
P. kawadai Introgression132035.40138.92105
P. kawadai Introgression135035.39138.89106
P. kawadai Introgression142035.23139.02107
P. kawadai Introgression135035.23139.02108
P. kawadai Introgression129934.86139.02109
P. kawadai Introgression140634.86139.00110
P. kawadai Introgression120034.85138.96111
P. kawadai Introgression115034.84138.96112
P. kawadai Introgression101334.84138.89113
P. kawadai Introgression100034.88138.88114
P. akitaorum 142034.36136.09115
P. akitaorum 152034.19136.1029
P. akitaorum 145034.27135.94116
P. akitaorum 182034.18135.91117
P. sugitai 122033.92134.34118
P. sugitai 112033.91134.29119
P. sugitai 132033.87134.0965
P. sugitai 156033.87133.37120
P. sugitai 152033.76133.14121
SpeciesAnalysis UnitSite No.Number examinedAccession No. of DDBJ
MorphologyGenetic region
MaleFemale COI ITS COI ITS
P. delicatulus Allopatric23131AB609374LC651902
LC651809
LC651810
P. delicatulus Allopatric31121LC651811LC651903
LC651812
P. delicatulus Allopatric93AB609375
AB609376
AB609377
P. delicatulus Allopatric10332AB426942
AB426943
P. delicatulus Allopatric111
P. delicatulus Allopatric1211AB426944
P. delicatulus Allopatric1316841AB609378LC651904
AB609379
AB609380
LC651813
P. delicatulus Allopatric1422
P. delicatulus Allopatric155
P. delicatulus Allopatric166431LC651814LC651905
LC651815
LC651816
P. delicatulus Allopatric181331LC651817LC651906
LC651818
LC651819
P. delicatulus Allopatric1911
P. delicatulus Allopatric21221LC651820LC651907
LC651821
P. delicatulus Allopatric221AB609381
P. delicatulus Allopatric2311AB426951
P. delicatulus Allopatric24982AB426952
AB426953
P. delicatulus Allopatric291232AB609382LC651908
LC651822LC651909
LC651823
P. delicatulus Allopatric311AB609383
P. delicatulus Allopatric33111LC651824LC651910
P. delicatulus Sympatric34573LC651825
LC651826
LC651827
P. delicatulus Sympatric351
P. delicatulus Sympatric3620203AB426945
AB426946
AB426947
P. delicatulus Sympatric381
P. delicatulus Sympatric39553LC651828
LC651829
LC651830
P. delicatulus Sympatric40343LC651831
LC651832
LC651833
P. delicatulus Sympatric4420912LC651834LC651911
LC651912
P. delicatulus Sympatric461
P. delicatulus Sympatric47483AB426948
AB426949
AB426950
P. delicatulus Sympatric48115LC651835
LC651836
LC651837
LC651838
LC651839
P. delicatulus Sympatric5011LC651840
P. delicatulus Sympatric511531same as LC651840LC651913
LC651841
LC651842
P. delicatulus Sympatric541121LC651843LC651914
LC651844
P. delicatulus (Others)5811AB609384LC651915
P. delicatulus (Others)591LC651845
P. delicatulus (Others)6041AB609385LC651916
AB609386
AB609387
AB609388
P. delicatulus (Others)642AB609389
AB609390
P. delicatulus (Others)6531AB426954LC651917
AB609391
AB609392
P. delicatulus (Others)671LC651846
P. delicatulus (Others)681LC651847
P. delicatulus (Others)6911LC651848LC651918
P. delicatulus (Others)7031AB609393LC651919
AB609394
AB609395
P. delicatulus (Others)7121LC651849LC510902
LC651850
P. delicatulus (Others)7231AB609396LC651920
AB609397
AB609398
P. delicatulus (Others)731AB426955
P. delicatulus (Others)7411LC651851LC651921
P. delicatulus (Others)753AB609401
AB609402
AB609403
P. delicatulus (Others)762AB609399
AB609400
P. delicatulus (Others)772LC651852
LC651853
P. delicatulus (Others)7842AB609405LC651922
AB609406LC651923
AB609407
AB609408
P. delicatulus (Others)792AB426956
AB426957
P. delicatulus (Others)801AB426958
P. delicatulus (Others)8121LC651854LC510903
LC651855
P. delicatulus (Others)8232AB426959LC651924
AB426960LC651925
AB426961
P. kawadai No introgression831211LC651856LC510905
P. kawadai No introgression345821LC651857LC651926
LC651858
P. kawadai No introgression35111LC651859
P. kawadai No introgression361353AB426962
AB426963
AB426964
P. kawadai No introgression37221LC651860LC651927
LC651861
P. kawadai No introgression8434
P. kawadai No introgression856341LC651862LC651928
LC651863
LC651864
LC651865
P. kawadai No introgression863331AB426965LC651929
AB426966
AB426967
P. kawadai No introgression872132LC651866LC651930
LC651867LC651931
LC651868
P. kawadai No introgression882132LC651869LC651932
LC651870LC651933
LC651871
P. kawadai No introgression481LC651872
P. kawadai No introgression49111LC651873LC651934
P. kawadai No introgression89222LC651874
LC651875
P. kawadai No introgression5011LC651876
P. kawadai No introgression90221LC651877LC651935
LC651878
P. kawadai No introgression9111AB609408
P. kawadai No introgression93112AB426968
AB426969
P. kawadai No introgression94101711LC651879LC651936
P. kawadai No introgression972321LC651880LC510906
LC651881
P. kawadai No introgression982331AB609409LC651937
AB609410
LC651882
P. kawadai Introgression9910662LC651883LC651938
LC651884LC651939
LC651885
LC651886
LC651887
LC651888
P. kawadai Introgression1004721LC651889LC510904
LC651890
P. kawadai Introgression448822LC651891LC651940
LC651892LC651941
P. kawadai Introgression10512921LC651893LC651942
LC651894
P. kawadai Introgression10616221LC651895LC651943
LC651896
P. kawadai Introgression10716922LC651897LC651944
LC651898LC651945
P. kawadai Introgression111161631LC651899LC651946
LC651900
LC651901
P. kawadai Introgression1121
P. akitaorum 11511AB609552LC510919
P. akitaorum 291AB427035
P. akitaorum 1161AB427039
P. akitaorum 1171AB609555
P. sugitai 1181AB588791
P. sugitai 1191AB588790
P. sugitai 6511AB588793LC510920
P. sugitai 1201AB588811
P. sugitai 1211AB609559
  31 in total

1.  Ecology and the origin of species.

Authors:  D Schluter
Journal:  Trends Ecol Evol       Date:  2001-07-01       Impact factor: 17.712

Review 2.  The evolution of growth trajectories: what limits growth rate?

Authors:  Caitlin M Dmitriew
Journal:  Biol Rev Camb Philos Soc       Date:  2011-02

3.  Ecological explanations to island gigantism: dietary niche divergence, predation, and size in an endemic lizard.

Authors:  Anna Runemark; Kostas Sagonas; Erik I Svensson
Journal:  Ecology       Date:  2015-08       Impact factor: 5.499

Review 4.  Ecological genomics of local adaptation.

Authors:  Outi Savolainen; Martin Lascoux; Juha Merilä
Journal:  Nat Rev Genet       Date:  2013-11       Impact factor: 53.242

5.  Environment-to-phenotype mapping and adaptation strategies in varying environments.

Authors:  BingKan Xue; Pablo Sartori; Stanislas Leibler
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-20       Impact factor: 11.205

6.  A reassessment of explanations for discordant introgressions of mitochondrial and nuclear genomes.

Authors:  Timothée Bonnet; Raphaël Leblois; François Rousset; Pierre-André Crochet
Journal:  Evolution       Date:  2017-08-16       Impact factor: 3.694

7.  Widespread convergence in toxin resistance by predictable molecular evolution.

Authors:  Beata Ujvari; Nicholas R Casewell; Kartik Sunagar; Kevin Arbuckle; Wolfgang Wüster; Nathan Lo; Denis O'Meally; Christa Beckmann; Glenn F King; Evelyne Deplazes; Thomas Madsen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

8.  Nuclear gene sequences resolve species phylogeny and mitochondrial introgression in Leptocarabus beetles showing trans-species polymorphisms.

Authors:  Ai-Bing Zhang; Teiji Sota
Journal:  Mol Phylogenet Evol       Date:  2007-07-12       Impact factor: 4.286

9.  Life in the desert: The impact of geographic and environmental gradients on genetic diversity and population structure of Ivesia webberi.

Authors:  Israel T Borokini; Kelly B Klingler; Mary M Peacock
Journal:  Ecol Evol       Date:  2021-11-23       Impact factor: 2.912

10.  Local ecological divergence of two closely related stag beetles based on genetic, morphological, and environmental analyses.

Authors:  Sheng-Nan Zhang; Kôhei Kubota
Journal:  Ecol Evol       Date:  2022-04-17       Impact factor: 3.167

View more
  1 in total

1.  Local ecological divergence of two closely related stag beetles based on genetic, morphological, and environmental analyses.

Authors:  Sheng-Nan Zhang; Kôhei Kubota
Journal:  Ecol Evol       Date:  2022-04-17       Impact factor: 3.167

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.