Literature DB >> 31221749

Environment-to-phenotype mapping and adaptation strategies in varying environments.

BingKan Xue1,2,3, Pablo Sartori4,2,3, Stanislas Leibler1,2,3.   

Abstract

Biological organisms exhibit diverse strategies for adapting to varying environments. For example, a population of organisms may express the same phenotype in all environments ("unvarying strategy") or follow environmental cues and express alternative phenotypes to match the environment ("tracking strategy"), or diversify into coexisting phenotypes to cope with environmental uncertainty ("bet-hedging strategy"). We introduce a general framework for studying how organisms respond to environmental variations, which models an adaptation strategy by an abstract mapping from environmental cues to phenotypic traits. Depending on the accuracy of environmental cues and the strength of natural selection, we find different adaptation strategies represented by mappings that maximize the long-term growth rate of a population. The previously studied strategies emerge as special cases of our model: The tracking strategy is favorable when environmental cues are accurate, whereas when cues are noisy, organisms can either use an unvarying strategy or, remarkably, use the uninformative cue as a source of randomness to bet hedge. Our model of the environment-to-phenotype mapping is based on a network with hidden units; the performance of the strategies is shown to rely on having a high-dimensional internal representation, which can even be random.

Entities:  

Keywords:  evolutionary theory; fluctuating environments; phenotypic plasticity; population dynamics; survival strategies

Year:  2019        PMID: 31221749      PMCID: PMC6628789          DOI: 10.1073/pnas.1903232116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  The complexity of complexes in signal transduction.

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2.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
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3.  Phenotypic diversity, population growth, and information in fluctuating environments.

Authors:  Edo Kussell; Stanislas Leibler
Journal:  Science       Date:  2005-08-25       Impact factor: 47.728

4.  Evolution of a polyphenism by genetic accommodation.

Authors:  Yuichiro Suzuki; H Frederik Nijhout
Journal:  Science       Date:  2006-02-03       Impact factor: 47.728

5.  The loss of adaptive plasticity during long periods of environmental stasis.

Authors:  Joanna Masel; Oliver D King; Heather Maughan
Journal:  Am Nat       Date:  2006-11-28       Impact factor: 3.926

6.  The evolution of bet-hedging adaptations to rare scenarios.

Authors:  Oliver D King; Joanna Masel
Journal:  Theor Popul Biol       Date:  2007-08-31       Impact factor: 1.570

7.  Evolutionary selection between alternative modes of gene regulation.

Authors:  Ulrich Gerland; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-22       Impact factor: 11.205

Review 8.  From genes to phenotype: dynamical systems and evolvability.

Authors:  P Alberch
Journal:  Genetica       Date:  1991       Impact factor: 1.082

9.  Experimental evolution of bet hedging.

Authors:  Hubertus J E Beaumont; Jenna Gallie; Christian Kost; Gayle C Ferguson; Paul B Rainey
Journal:  Nature       Date:  2009-11-05       Impact factor: 49.962

10.  Bet hedging in a guild of desert annuals.

Authors:  D Lawrence Venable
Journal:  Ecology       Date:  2007-05       Impact factor: 5.499

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  11 in total

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Journal:  J R Soc Interface       Date:  2020-09-09       Impact factor: 4.118

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Authors:  Henry H Mattingly; Thierry Emonet
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-21       Impact factor: 12.779

3.  Alternative responses to rare selection events are differentially vulnerable to changes in the frequency, scope, and intensity of environmental extremes.

Authors:  Thomas R Haaland; Carlos A Botero
Journal:  Ecol Evol       Date:  2019-09-27       Impact factor: 2.912

4.  Adaptive tuning of cell sensory diversity without changes in gene expression.

Authors:  K Kamino; J M Keegstra; J Long; T Emonet; T S Shimizu
Journal:  Sci Adv       Date:  2020-11-13       Impact factor: 14.136

5.  Evolution of phenotypic fluctuation under host-parasite interactions.

Authors:  Naoto Nishiura; Kunihiko Kaneko
Journal:  PLoS Comput Biol       Date:  2021-11-09       Impact factor: 4.475

Review 6.  Neuromodulation and Individuality.

Authors:  Ryan T Maloney
Journal:  Front Behav Neurosci       Date:  2021-11-24       Impact factor: 3.558

Review 7.  Microbial resistance to nanotechnologies: An important but understudied consideration using antimicrobial nanotechnologies in orthopaedic implants.

Authors:  Zhuoran Wu; Brian Chan; Jessalyn Low; Justin Jang Hann Chu; Hwee Weng Dennis Hey; Andy Tay
Journal:  Bioact Mater       Date:  2022-03-03

8.  Evolutionary dynamics, evolutionary forces, and robustness: A nonequilibrium statistical mechanics perspective.

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Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-21       Impact factor: 12.779

Review 9.  Merging the exposome into an integrated framework for "omics" sciences.

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Journal:  iScience       Date:  2022-02-24

10.  Local ecological divergence of two closely related stag beetles based on genetic, morphological, and environmental analyses.

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Journal:  Ecol Evol       Date:  2022-04-17       Impact factor: 3.167

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