Literature DB >> 24136507

Ecological genomics of local adaptation.

Outi Savolainen1, Martin Lascoux, Juha Merilä.   

Abstract

It is increasingly important to improve our understanding of the genetic basis of local adaptation because of its relevance to climate change, crop and animal production, and conservation of genetic resources. Phenotypic patterns that are generated by spatially varying selection have long been observed, and both genetic mapping and field experiments provided initial insights into the genetic architecture of adaptive traits. Genomic tools are now allowing genome-wide studies, and recent theoretical advances can help to design research strategies that combine genomics and field experiments to examine the genetics of local adaptation. These advances are also allowing research in non-model species, the adaptation patterns of which may differ from those of traditional model species.

Mesh:

Year:  2013        PMID: 24136507     DOI: 10.1038/nrg3522

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  154 in total

1.  Joint estimation of contemporary seed and pollen dispersal rates among plant populations.

Authors:  J J Robledo-Arnuncio
Journal:  Mol Ecol Resour       Date:  2011-11-16       Impact factor: 7.090

2.  Using environmental correlations to identify loci underlying local adaptation.

Authors:  Graham Coop; David Witonsky; Anna Di Rienzo; Jonathan K Pritchard
Journal:  Genetics       Date:  2010-06-01       Impact factor: 4.562

3.  Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae).

Authors:  Andrew J Eckert; Andrew D Bower; Santiago C González-Martínez; Jill L Wegrzyn; Graham Coop; David B Neale
Journal:  Mol Ecol       Date:  2010-08-13       Impact factor: 6.185

4.  Gene flow's effect on the genetic architecture of a local adaptation and its consequences for QTL analyses.

Authors:  C K Griswold
Journal:  Heredity (Edinb)       Date:  2006-06       Impact factor: 3.821

5.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

Review 6.  The peppered moth and industrial melanism: evolution of a natural selection case study.

Authors:  L M Cook; I J Saccheri
Journal:  Heredity (Edinb)       Date:  2012-12-05       Impact factor: 3.821

7.  Adaptations to climate-mediated selective pressures in humans.

Authors:  Angela M Hancock; David B Witonsky; Gorka Alkorta-Aranburu; Cynthia M Beall; Amha Gebremedhin; Rem Sukernik; Gerd Utermann; Jonathan K Pritchard; Graham Coop; Anna Di Rienzo
Journal:  PLoS Genet       Date:  2011-04-21       Impact factor: 5.917

8.  Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

Authors:  Susanna Atwell; Yu S Huang; Bjarni J Vilhjálmsson; Glenda Willems; Matthew Horton; Yan Li; Dazhe Meng; Alexander Platt; Aaron M Tarone; Tina T Hu; Rong Jiang; N Wayan Muliyati; Xu Zhang; Muhammad Ali Amer; Ivan Baxter; Benjamin Brachi; Joanne Chory; Caroline Dean; Marilyne Debieu; Juliette de Meaux; Joseph R Ecker; Nathalie Faure; Joel M Kniskern; Jonathan D G Jones; Todd Michael; Adnane Nemri; Fabrice Roux; David E Salt; Chunlao Tang; Marco Todesco; M Brian Traw; Detlef Weigel; Paul Marjoram; Justin O Borevitz; Joy Bergelson; Magnus Nordborg
Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

9.  Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales.

Authors:  Ke Bi; Dan Vanderpool; Sonal Singhal; Tyler Linderoth; Craig Moritz; Jeffrey M Good
Journal:  BMC Genomics       Date:  2012-08-17       Impact factor: 3.969

10.  Adaptive variation in beach mice produced by two interacting pigmentation genes.

Authors:  Cynthia C Steiner; Jesse N Weber; Hopi E Hoekstra
Journal:  PLoS Biol       Date:  2007-09       Impact factor: 8.029

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  285 in total

1.  Expression Differentiation Is Constrained to Low-Expression Proteins over Ecological Timescales.

Authors:  Mark J Margres; Kenneth P Wray; Margaret Seavy; James J McGivern; Nathanael D Herrera; Darin R Rokyta
Journal:  Genetics       Date:  2015-11-06       Impact factor: 4.562

Review 2.  Common garden experiments in the genomic era: new perspectives and opportunities.

Authors:  P de Villemereuil; O E Gaggiotti; M Mouterde; I Till-Bottraud
Journal:  Heredity (Edinb)       Date:  2015-10-21       Impact factor: 3.821

3.  Genetic architecture of a body colour cline in Drosophila americana.

Authors:  Lisa L Sramkoski; Wesley N McLaughlin; Arielle M Cooley; David C Yuan; Alisha John; Patricia J Wittkopp
Journal:  Mol Ecol       Date:  2020-07-13       Impact factor: 6.185

4.  A genomic perspective on the generation and maintenance of genetic diversity in herbivorous insects.

Authors:  Andrew D Gloss; Simon C Groen; Noah K Whiteman
Journal:  Annu Rev Ecol Evol Syst       Date:  2016-08-19       Impact factor: 13.915

5.  Next-generation sequencing propels environmental genomics to the front line of research.

Authors:  D Joly; D Faure
Journal:  Heredity (Edinb)       Date:  2015-05       Impact factor: 3.821

Review 6.  Genetic approaches in comparative and evolutionary physiology.

Authors:  Jay F Storz; Jamie T Bridgham; Scott A Kelly; Theodore Garland
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2015-06-03       Impact factor: 3.619

7.  Trait dimensionality explains widespread variation in local adaptation.

Authors:  Ailene MacPherson; Paul A Hohenlohe; Scott L Nuismer
Journal:  Proc Biol Sci       Date:  2015-03-07       Impact factor: 5.349

8.  Rare genetic variation and balanced polymorphisms are important for survival in global change conditions.

Authors:  Reid S Brennan; April D Garrett; Kaitlin E Huber; Heidi Hargarten; Melissa H Pespeni
Journal:  Proc Biol Sci       Date:  2019-06-12       Impact factor: 5.349

Review 9.  Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions.

Authors:  Sean Hoban; Joanna L Kelley; Katie E Lotterhos; Michael F Antolin; Gideon Bradburd; David B Lowry; Mary L Poss; Laura K Reed; Andrew Storfer; Michael C Whitlock
Journal:  Am Nat       Date:  2016-08-15       Impact factor: 3.926

10.  Organic acid metabolites involved in local adaptation to altitudinal gradient in Agriophyllum squarrosum, a desert medicinal plant.

Authors:  Shanshan Zhou; Jian Yang; Chaoju Qian; Xiaoyue Yin; Xia Yan; Xingke Fan; Tingzhou Fang; Yuan Gao; Yuxiao Chang; Xiao-Fei Ma
Journal:  J Plant Res       Date:  2021-07-26       Impact factor: 2.629

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