In this work, we investigated the influence of stabilizing (N,N,N-trimethylglycine) and destabilizing (urea) osmolytes on the hydration spheres of biomacromolecules in folded forms (trpzip-1 peptide and hen egg white lysozyme─hewl) and unfolded protein models (glycine─GLY and N-methylglycine─NMG) by means of infrared spectroscopy. GLY and NMG were clearly limited as minimal models for unfolded proteins and should be treated with caution. We isolated the spectral share of water changed simultaneously by the biomacromolecule/model molecule and the osmolyte, which allowed us to provide unambiguous experimental arguments for the mechanism of stabilization/destabilization of proteins by osmolytes. In the case of both types of osmolytes, the decisive factor determining the equilibrium folded/unfolded state of protein was the enthalpy effect exerted on the hydration spheres of proteins in both forms. In the case of stabilizing osmolytes, enthalpy was also favored by entropy, as the unfolded state of a protein was more entropically destabilized than the folded state.
In this work, we investigated the influence of stabilizing (N,N,N-trimethylglycine) and destabilizing (urea) osmolytes on the hydration spheres of biomacromolecules in folded forms (trpzip-1 peptide and hen egg white lysozyme─hewl) and unfolded protein models (glycine─GLY and N-methylglycine─NMG) by means of infrared spectroscopy. GLY and NMG were clearly limited as minimal models for unfolded proteins and should be treated with caution. We isolated the spectral share of water changed simultaneously by the biomacromolecule/model molecule and the osmolyte, which allowed us to provide unambiguous experimental arguments for the mechanism of stabilization/destabilization of proteins by osmolytes. In the case of both types of osmolytes, the decisive factor determining the equilibrium folded/unfolded state of protein was the enthalpy effect exerted on the hydration spheres of proteins in both forms. In the case of stabilizing osmolytes, enthalpy was also favored by entropy, as the unfolded state of a protein was more entropically destabilized than the folded state.
Osmolytes, a group
of small organic molecules, can alter the stability
of proteins.[1,2] They can be divided into two subgroups,
namely, stabilizers and destabilizers (or denaturants), according
to their influence on proteins.[3,4] The mechanism of the
influence has been the focus of many studies,[5−14] yet there is no general agreement on the mode of action of osmolytes.
One of the main theories—“the osmophobic theory”—states
that the interactions between stabilizing osmolytes and the peptide
backbone of both the native and denatured states are unfavorable.
As a result, stabilizing osmolytes are excluded from the vicinity
of proteins.[8,12,15−23] The surface of proteins is larger in the case of unfolded forms;
thus, the equilibrium of the folding reaction is shifted toward the
native state due to the entropy effect associated with the exclusion
of the volume available for the osmolyte molecules. In turn, the driving
force of protein unfolding by destabilizing osmolytes is the favorable
enthalpy change, which results from a higher number of active binding
centers accessible to denaturants in unfolded proteins.[12,24] Another hypothesis states that the stabilization or destabilization
of proteins is the result of an indirect influence of osmolytes arising
from the change in water properties in their solutions.[6,10,22,25−27] Some research teams indicate that the real mechanism
can be a mix of both direct and indirect mechanisms.[6,28]Our previous results point out the crucial role of the hydration
water of osmolytes and its similarity or dissimilarity in the hydration
water of proteins.[29] It has been demonstrated
that stabilizing osmolytes [trimethylamine N-oxide,
glycine (GLY) and its N-methyl derivatives, and amino
acids] show a very similar type of hydration in terms of energy and
hydrogen bond length distribution, which corresponds well to the type
of protein hydration.[29,30] The only exception is taurine.[31] In the case of both proteins and stabilizing
osmolytes, hydrogen bonds in the hydration water are significantly
strengthened in relation to the pure water. Conversely, destabilizing
osmolytes (urea and its alkyl derivatives) also show a similar type
of hydration to each other but differ significantly from that of the
protein. The hydration water around this group of osmolytes resembles
pure water but with a narrower probability distribution of the hydrogen
bond lengths, that is, an increased population of water molecules
with properties most likely to be found in pure water. Many other
experimental[23,27,32−44] and theoretical[27,36,39,42−52] studies on the effect of osmolytes on water have been published
to date.It should be emphasized that, at this point, knowledge
of the influence
of osmolytes on the properties of pure water is a separate issue with
regard to their influence on the hydration sphere of proteins. This
statement is confirmed by several findings. The most spectacular ones
concern the difference in the influence of urea and taurine on the
state of pure water and on the state of water in the hydration sphere
of the reference molecules. It is well known that urea changes the
properties of pure water to a very small extent,[32−34,39,44,46,52] while it significantly weakens
the hydrogen bonds of the hydration water of molecules modeling the
properties of the surface of proteins in a folded form.[53] Taurine, conversely, strongly weakens the hydrogen
bonds of water in its environment[31] and
simultaneously stabilizes the folded form of proteins.[31,54] Therefore, in the context of the problem studied in this paper,
there is insufficient knowledge of the influence of osmolytes on the
surrounding water, and it is necessary to understand this influence
on the hydration sphere of the protein in its folded and unfolded
forms. Information on this subject is very incomplete and scarce in
the literature, even in those studies performed using theoretical
methods.[53]In light of the information
provided earlier regarding the similarity
of hydration of previously investigated stabilizing and destabilizing
osmolytes, in this work, we selected N, N, N-trimethylglycine (TMG, betaine) as a representative
stabilizer and urea as a representative destabilizing osmolyte and
examined their influence on the folded form of real biomacromolecules: trpzip-1 peptide and hen egg white lysozyme (hewl). Trpzip-1 is a simple β-hairpin peptide
with a well-defined sequence and a stable secondary structure in solution.
Lysozyme is a small globular protein with a well-known structure and
is often used as a model protein for studying the protein-folding
process. It should be emphasized that at the temperature of the experiment,
25 °C, both biomacromolecules are virtually only in their native
folded states, even in the most concentrated urea solution used in
our studies. Measurements of an appropriate influence of osmolytes
on the unfolded form of these biomacromolecules encounter experimental
difficulties because these compounds, after thermal denaturation and
cooling to 25 °C, show a highly distorted, aggregated, or only
partially renatured structure. These features force the use of model
molecules in place of the practically unattainable unfolded forms
of the studied proteins at room temperature. When selecting these
models, we were guided by the following arguments. We have numerous
theoretical and experimental premises to support that the folded form
of a protein has a hydration sphere characterized by stronger hydrogen
bonds than the hydration sphere of its unfolded form because the surface
of the folded form of a protein is characterized by its immediate
proximity to hydrophilic centers and hydrophobic regions, in contrast
to the surface of the chain of the unfolded form of the protein. Previously,
we were able to show, using the hydration of NMA (N-methylacetamide)[55] and DMSO (dimethylsulfoxide)[56] model molecules, that such a direct proximity
favors the formation of a strong clathrate-like water structure around
closely located hydrophobic groups. However, such an enhancement was
possible only if the interaction of water with polar groups was stronger
than that between bulk water molecules. This cooperativity of hydrogen
bonds of water molecules, that is, between those interacting with
the hydrophilic centers and water molecules at the hydrophobic surface
of the protein, results in anchoring the shared network of water hydrogen
bonds on the hydrophilic group and its dynamic stabilization. In this
work, we used GLY and N-methylglycine (NMG) as models
of unfolded peptides or protein fragments. GLY does not have a typical
hydrophobic group—our observation suggests that the CH2 group in the surroundings of polar groups, as in the case
of amino acids, is not a sufficient hydrophobic center to organize
water molecules in a manner characteristic of hydrophobic hydration.
Other studies support this perspective.[57] In the case of NMG, the hydrophobic group is not directly adjacent
to the polar group. The adopted models intended to correspond to fragments
of the unfolded protein clearly have significant limitations due to
the different chemical structures with respect to the protein molecules.
It should also be noted that the hydrophobic effects depend on the
solute size[58] and therefore may be different
for small solutes (i.e., model molecules) and large solutes (i.e.,
proteins). In turn, the size of the molecules may affect their electronic
properties, which play an important role in the way osmolytes interact
with proteins.[59] However, the selected
model molecules have the abovementioned important feature, which,
in our opinion, may qualify them for the assigned role.The
influence of selected representatives of stabilizing and destabilizing
osmolytes on the hydration sphere of the selected peptide and protein
and model molecules can be studied as a function of the osmolyte concentration
by means of Fourier transform infrared (FTIR) spectroscopy and a recently
developed method of data analysis.[53] This
method allowed us to isolate the part of the water that is simultaneously
modified by the biomacromolecule (or model molecule) and the osmolyte.
Data obtained from this analysis are crucial for understanding the
mechanism of the role of osmolytes in the stabilization/destabilization
of biological systems.
Methods
Chemicals and Solutions
GLY (Aldrich, Darmstadt, Germany
≥99%) and NMG (Fluka, Steinheim, Germany, ≥99%) were
used as model molecules. The Trpzip-1 peptide (SWTWEGNKWTWK,
Lipopharm.pl, Zblewo, Poland) and the hen egg white lysozyme (hewl, 129 amino acid residues, Fluka, Steinheim, Germany)
were used as biomacromolecules.TMG (Alfa Aesar, Karlsruhe,
Germany, 98%) and urea (Aldrich, Darmstadt, Germany, 99.5%) were used
as osmolytes.Two series of solutions for each system were prepared
for the measurements—semiheavy
water (HDO) solutions and reference H2O solutions. Each
series consisted of model solutes or biomacromolecules at a constant
molal concentration and varying concentrations of osmolyte. Molalities
of GLY (ca. 70 mg mL–1) or NMG (ca. 83 mg mL–1) in solution were approximately 1 mol kg–1, and molalities of trpzip-1 and hewl were ca. 0.035 mol kg–1 (ca. 53 mg mL–1) and 0.008 mol kg–1 (ca. 102 mg mL–1), respectively. Samples of the HDO series were prepared by adding
D2O to each of them at 4% of the total mass of water in
solutions. Equal molar amounts of water were added to samples of the
reference series.
FTIR Measurements
A Nicolet 8700
spectrometer (Thermo
Electron Co., Waltham, Massachusetts, US) was used to register the
FTIR spectra of solutions at 25.0 ± 0.1 °C. For measurements,
a liquid transmission cell (model A145, Bruker Optics, Billerica,
Massachusetts, US) with CaF2 windows separated by PTFE
spacers, a KBr beamsplitter, a DTGS TEC detector, and the EverGlo
IR source was used. The path length was equal to 0.029 mm, as determined
interferometrically. Each spectrum consisted of an average of 256
independent scans with a selected resolution of 4 cm–1. The spectrometer was purged with dry nitrogen during the measurement.
Spectra were analyzed using commercial software: GRAMS/32 4.01 (Galactic
Industries Corporation, Salem, NH, USA) and RAZOR (Spectrum Square
Associates, Inc, Ithaca, NY, USA.) run under GRAMS/32. The parameters
of spectral bands (gravity centers, position, etc.) were calculated
using GRAMS/AI version 9.3 (Thermo Fisher Scientific Inc).
Spectral
Data Analysis
The OD stretching vibration
bands of HDO are used to probe the state of water in solution. The
applied method of HDO spectral analysis is based on the quantitative
method of difference spectra.[60,61] In its simplest version,
it leads to the isolation of the spectral fraction of those water
molecules that are affected by the solute (i.e., are under its influence
in the spectroscopic sense).The boundary cases occurring in
a solution consisting of two different solutes are illustrated in Figure S1 in the Supporting Information. The
details of the spectral data method analysis in systems with two solutes
and details of the cases in Figure S1 are
described in the Supporting Information and in ref (53). The analysis procedure
includes several steps. First, the affected water spectrum in an aqueous
solution containing only one solute, a model molecule, a biomacromolecule
(m) or osmolyte (o) and the corresponding N number,
that is, the number of moles of water molecules affected by one mole
of the solute, are determined. The second step involves isolation
of the affected water spectrum in the solution containing two solutes
(model molecule/biomacromolecule and osmolyte): the so-called “experimental”
spectrum of affected water and the average number of moles of affected
water molecules by one mole of solutes m and o taken together (i.e., nm + no = 1 mol), Ne. Next, the so-called “synthetic”
spectrum of affected water is constructed from the spectra of affected
water obtained for pure components: model molecule/biomacromolecule
and osmolyte. This spectrum corresponds to the average number of moles
of water molecules affected by one mole of solute taken together, Ns. The “synthetic” affected spectrum
corresponds to the hypothetical situation, where hydration spheres
of both solutes are isolated in solution and any interactions between
them are absent. The final step is the isolation of the spectrum of
water affected simultaneously by both solutes, the so-called “double”
affected water spectrum (Figures S7 and S8 in the Supporting Information). For this purpose, the “synthetic”
water spectrum (Figures S5 and S6 in the
Supporting Information) is subtracted from the “experimental”
water spectrum (Figures S3 and S4 in the
Supporting Information). Details for extracting the “double”
affected water spectra are described in the Supporting Information. To facilitate the comparison of the number of
affected water molecules corresponding to the “experimental”
(Ne) and “synthetic” (Ns) affected spectra, the values of the affected
water molecules were transformed into the Np functions: Npe = Ne·(β + 1) or Nps = Ns·(β + 1). These functions present
the situation for the set consisting of 1 mol of a model molecule/biomacromolecule
and β moles of an osmolyte (where β is a molar ratio of
the osmolyte to the model molecule/biomacromolecule in solution).
The differences in Np for “experimental”
and “synthetic” affected water spectra for studied systems
are presented in Tables S1 and S2 in the
Supporting Information.The interpretation of the spectral results
is based on the Badger–Bauer
rule,[62] according to which the energy of
hydrogen bonds changes proportionally to the shift of the OD (OH)
band position. Stronger hydrogen bonds correspond to lower wavenumbers
of the OD band position. The value of the positions of the OD band
gravity center (νg) is a measure of the average hydrogen
bond energy, while the band position at its maximum corresponds to
the most likely energy.The structural state of biomacromolecule
or model molecule hydration
water under the influence of the osmolyte can be characterized by
the interatomic O···O distance distribution function, P(ROO). For this purpose, transformation
of the spectral contours of the “double” affected water
and water affected by the biomacromolecule/model molecule was performed
according to the procedure described in refs (63) and (61) using the empirical function
from ref (64).
Results
Influence
of Osmolytes on the Hydration Spheres of Folded Forms
of Biomacromolecules
The “experimental” and
“synthetic” spectra of affected water for biomacromolecules
in the presence of osmolytes (trpzip-1 + TMG, hewl + TMG, trpzip-1 + urea, and hewl + urea) are shown in Figures S3 and S5. The numbers of affected water molecules (Np) determined for these spectra as a function of osmolyte
molality are presented in Figure . In each case, Np for
the “experimental” spectra is smaller than Np for the “synthetic” spectra. This observation
means that some water molecules are shared between the hydration spheres
of both solutes due to overlapping of these spheres (see Figure S1d).
Figure 1
Numbers of affected water molecules, Np, obtained for “experimental”
(red squares) and “synthetic”
affected water spectra (black squares) as a function of molality of
the osmolyte for (a) trpzip-1 + TMG, (b) hewl + TMG, (c) trpzip-1 + urea, and (d) hewl + urea systems. See the Supporting Information for details regarding the error bar determination.
Numbers of affected water molecules, Np, obtained for “experimental”
(red squares) and “synthetic”
affected water spectra (black squares) as a function of molality of
the osmolyte for (a) trpzip-1 + TMG, (b) hewl + TMG, (c) trpzip-1 + urea, and (d) hewl + urea systems. See the Supporting Information for details regarding the error bar determination.To compare the effect of both osmolytes on the
hydration spheres
of biomacromolecules in terms of the hydrogen bond energy of water,
differences in the values of the gravity center of bands between the
“double” affected water (Figure S7) and the water affected solely by the biomacromolecule (Δνg) as a function of the osmolyte molality were calculated and
are presented in Figure . Negative Δνg values indicate stronger hydrogen
bonds in the “double” affected water than in the water
affected only by a biomacromolecule, whereas positive values of Δνg mean that water hydrogen bonds in the “double”
affected water are weaker. For biomacromolecule–TMG systems,
the enhancement of the energy of hydrogen bonds in the hydration spheres
of biomacromolecules (negative Δνg values)
is clearly visible in the whole range of stabilizing osmolyte molalities.
The increase in the energy of hydrogen bonds is more pronounced at
low molalities of TMG in the trpzip-1 + TMG system.
A possible explanation for this phenomenon is the ligand-like behavior
of TMG.[65] At low molality, TMG accumulates
near specific interaction centers on the protein/peptide surface;
therefore, it strongly influences water molecules shared with the
biomacromolecule. At some specific molality, those interaction sites
are saturated. The rest of the less specifically located TMG molecules
enhance the less-effective water hydrogen bond energy. This effect
is also visible in Figure a as a population of very strong hydrogen bonds (at 2.70 Å)
at the lowest TMG molality. It shifts toward a slightly weaker interaction
(but still strong) at higher molalities of TMG. However, the hydrogen
bonds in the hydration spheres of biomacromolecules are weakened in
the presence of destabilizing osmolyte—urea (positive Δνg values).
Figure 2
Differences in the values of the gravity center of bands
(a measure
of the average hydrogen bond energy of water molecules) between the
“double” affected water and the water affected by the
model biomacromolecule (Δνg = νdoubleg –
νmg) as
a function of osmolyte molality (mo).
Red lines indicate systems involving urea. Black lines indicate systems
involving TMG.
Figure 3
Differences between the interatomic O···O
distance
distribution function, ΔP(ROO) = P(ROO)double – P(ROO)macromolecule, as a function of osmolyte
molality (m) [mol kg–1] in (a) trpzip-1 + TMG, (b) hewl + TMG, (c) trpzip-1 + urea, and (d) hewl + urea systems.
The vertical dashed line corresponds to the most likely O···O
distance in pure water (2.83 ± 0.01 Å).
Differences in the values of the gravity center of bands
(a measure
of the average hydrogen bond energy of water molecules) between the
“double” affected water and the water affected by the
model biomacromolecule (Δνg = νdoubleg –
νmg) as
a function of osmolyte molality (mo).
Red lines indicate systems involving urea. Black lines indicate systems
involving TMG.Differences between the interatomic O···O
distance
distribution function, ΔP(ROO) = P(ROO)double – P(ROO)macromolecule, as a function of osmolyte
molality (m) [mol kg–1] in (a) trpzip-1 + TMG, (b) hewl + TMG, (c) trpzip-1 + urea, and (d) hewl + urea systems.
The vertical dashed line corresponds to the most likely O···O
distance in pure water (2.83 ± 0.01 Å).Next, ΔP(ROO)
functions (Figure ) are obtained by subtracting the O···O distance distribution
function for water affected by the biomacromolecule, P(ROO)macromolecule, from an
analogous distance distribution function for “double”
affected water, P(ROO)double. This operation enabled us to visualize the influence
of osmolytes on the hydration sphere of trpzip-1
and hewl in the context of intermolecular distance. Figure shows that the presence
of TMG in the trpzip-1 and hewl solutions
increases the population of strong hydrogen bonds (positive ΔP(ROO) values), with an O···O
length of approximately 2.74 Å (which corresponds to the distances
in ice[66]). This increase is accompanied
by a reduction in the population of water molecules at distances of
approximately 2.83 Å (negative ΔP(ROO) values), which corresponds to the most likely
distance in pure water. The only exception is visible in the hewl + TMG system at the highest molality of TMG, where
a slight increase in this population is observed. It is worth noting
that the differences ΔP(ROO) obtained for the hewl + TMG system are
smaller than those for the trpzip-1 system, indicating
that TMG has a reduced effect on the hydration sphere of hewl than on that of trpzip-1.The effect of urea
on the hydration sphere of trpzip-1 and hewl is opposite. In the case of both biomacromolecules,
at the lowest molality of urea, an increase in weak and long hydrogen
bonds (2.87–2.90 Å) and a decrease in strong and short
hydrogen bonds are observed. At higher urea molalities, a distinct
population of hydrogen bonds with distances equal to and longer than
the most likely distance in pure water (2.83 Å) emerges. Moreover,
in contrast to TMG, urea influences the hydration spheres of both
biomacromolecules to a similar extent.
Influence of Osmolytes
on the Hydration Spheres of Model Molecules
in Relation to the Fragments of Unfolded Forms of Proteins
The “experimental” and “synthetic” spectra
of affected water for model molecules in the presence of osmolytes
(GLY + TMG, NMG + TMG, GLY + urea, and NMG + urea) are presented in Figures S4 and S6. Figure shows the numbers of affected water molecules
(Np) obtained for these spectra as a function
of osmolyte molality. As shown in Figure a,b, the Np values
corresponding to the “experimental” spectra are higher
than those of the “synthetic” spectra at molalities
lower than 2.4 and 1 mol kg–1 for GLY + TMG and
NMG + TMG systems, respectively. This finding indicates that additional
water molecules are affected, that is, the cross-linking water (see Figure S1b). Conversely, at the higher molalities
of stabilizing osmolytes, the Np values
for the “experimental” spectra are lower than those
for the “synthetic” spectra. This result indicates the
existence of shared affected water, that is, hydration sphere overlap
(see Figure S1d). In the case of systems
with urea (Figure c,d), the number of affected water molecules (Np) for the “experimental” spectra is lower than
that for the “synthetic” spectra in the whole range
of studied molalities.
Figure 4
Numbers of affected water molecules, Np, obtained for “experimental” (red squares)
and “synthetic”
affected water spectra (black squares) as a function of molality of
the osmolyte for (a) GLY + TMG, (b) NMG + TMG, (c) GLY + urea, and
(d) NMG + urea systems. See the Supporting Information for details regarding the error bar determination.
Numbers of affected water molecules, Np, obtained for “experimental” (red squares)
and “synthetic”
affected water spectra (black squares) as a function of molality of
the osmolyte for (a) GLY + TMG, (b) NMG + TMG, (c) GLY + urea, and
(d) NMG + urea systems. See the Supporting Information for details regarding the error bar determination.The influence of TMG and urea on the hydration spheres of
model
molecules in the energetic aspect of Δνg is
shown in Figure .
The “double” affected water spectra obtained for these
systems are shown in Figure S8. The analysis
of Δνg indicates that H-bonds in the hydration
sphere of GLY are weakened in the presence of TMG (positive values
of Δνg) when compared to water affected only
by GLY. This situation occurs in the entire range of TMG molalities,
both in the case of water linking the hydration spheres of two solutes
(Figure S1b) and shared affected water
(Figure S1d). In the NMG + TMG system at
molalities below 1 mol kg–1, the energy of hydrogen
bonds of “double” affected water is lower relative to
NMG-affected water (positive values of Δνg),
while at higher molalities of TMG it is higher (negative values of
Δνg). Moreover, the enhancing effect of TMG
on the NMG hydration sphere and weakening on the GLY hydration sphere
decreases with the increasing molality of TMG.
Figure 5
Differences in the values
of the gravity center of bands (a measure
of the average hydrogen bond energy of water molecules) between the
“double” affected water and the water affected by the
model molecule (Δνg = νdoubleg – νmg) as a function
of osmolyte molality (mo). Red lines indicate
systems involving urea. Black lines indicate systems involving TMG.
Differences in the values
of the gravity center of bands (a measure
of the average hydrogen bond energy of water molecules) between the
“double” affected water and the water affected by the
model molecule (Δνg = νdoubleg – νmg) as a function
of osmolyte molality (mo). Red lines indicate
systems involving urea. Black lines indicate systems involving TMG.The impact of urea on the hydration spheres of
both model molecules
is similar: hydrogen bonds in their hydration spheres are strengthened
(negative Δνg) at molalities below 2.3 or 1.5
mol kg–1 for GLY + urea and NMG + urea systems,
respectively. Above these molality values, weakening of the hydrogen
bonds of water around the model molecules becomes noticeable, manifested
by positive values of Δνg. This phenomenon
is definitely different from the one that occurs in the case of hydration
spheres of biomacromolecules in the folded form studied in this work
but also from simple protein modeling solutes, such as NMA and DMSO,[53] where the energy of hydrogen bonds is weakened,
even at the lowest urea concentrations. It seems most likely that
urea interacts initially via its carbonyl group with those water molecules
that form hydrogen bonds with the hydrogen atoms of the amino group
of GLY (three such interactions are possible) or amino group of NMG
(two such interactions are possible). Further impact of urea relies
on hydrogen bonds via the amino groups of the molecule, which results
in a reduction in their strength. As is known,[46,67,68] hydrogen bonds between the −NH2 group of urea and water are weak and at least significantly
weaker than interactions of the water–water type. Only urea
interactions via the carbonyl group are stronger than water–water
interactions.[46,67,68] Direct interactions of urea with model molecules, resulting in the
removal of water molecules from their strong centers of interaction,
are also a possible reason for weakening of the hydrogen bonds of
hydration water at higher urea molalities.More information
on the structural state of hydrogen bonds of water
under the simultaneous influence of the model molecule and osmolyte
(i.e., “double” affected water) was obtained on the
basis of differences in the distribution of distances between “double”
affected water and water affected only by the model molecule, ΔP(ROO), (see Figure ).
Figure 6
Differences between the
interatomic O···O distance
distribution function, ΔP(ROO) = P(ROO)double – P(ROO)model, as a function of osmolyte molality
(m) [mol kg–1] in systems of (a)
GLY + TMG, (b) NMG + TMG, (c) GLY + urea, and (d) NMG + urea. The
dashed line indicates cross-linking water, while the solid line indicates
shared water. The vertical dashed line corresponds to the most likely
O···O distance in pure water (2.83 ± 0.01 Å).
Differences between the
interatomic O···O distance
distribution function, ΔP(ROO) = P(ROO)double – P(ROO)model, as a function of osmolyte molality
(m) [mol kg–1] in systems of (a)
GLY + TMG, (b) NMG + TMG, (c) GLY + urea, and (d) NMG + urea. The
dashed line indicates cross-linking water, while the solid line indicates
shared water. The vertical dashed line corresponds to the most likely
O···O distance in pure water (2.83 ± 0.01 Å).In the GLY + TMG (Figure a) and NMG + TMG (Figure b) systems, at the lowest TMG molalities,
the population
of moderate and weak hydrogen bonds (2.80–2.95 Å) increases,
and simultaneously, the population of strong hydrogen bonds (2.75
Å) decreases relative to water affected by the model molecule
(GLY or NMG). It is worth noting that for these systems, at these
molalities, cross-linking “double” affected water occurs.
For the highest molality of TMG (2.93 mol kg–1),
a smaller increase in the water hydrogen bond population with O···O
distances at approximately 2.83 Å takes place (in the NMG + TMG
system, the contribution of these bonds is insignificant), and an
increase in the population of strong hydrogen bonds can be noticed.
ΔP(ROO) obtained
for this molality corresponds to the situation in which the hydration
spheres of both molecules overlap with each other (i.e., shared “double”
affected water).The effect of urea on the hydration spheres
of GLY and NMG is similar
(Figure c,d). At the
lowest urea molality (approx. 0.5 mol kg–1), the
population of hydrogen bonds between water molecules with O···O
distances of approximately 2.83 Å decreases, while the population
of very strong hydrogen bonds (2.75 Å) increases (compared with
water affected by model molecules: GLY or NMG). With the increase
in the urea concentration, the contribution of medium and weak hydrogen
bonds increases, whereas the contribution of very strong hydrogen
bonds decreases. At the highest concentration of urea (6.30 and 5.91
mol kg–1 for GLY + TMG oraz NMG + TMG systems, respectively),
only a significant population of medium and weak hydrogen bonds can
be observed.
Discussion
The hypothesis of the
indirect influence of osmolytes on protein
stability has led researchers to investigate the influence of osmolytes
on the structure and properties of water in their surroundings.[23,27,33,35,36,38−40,42−44,46−48,51,52] A popular assumption was that kosmotropic
solutes (structure-makers) should stabilize protein, while chaotropic
(structure-breakers) solutes should destabilize them.[69,70] However, results of studies on the influence of osmolytes on water
are frequently contradictory,[38−40,43−46,48,49,69,71] due to the
use of different research methods and different parameters for water
characterization.[72] Some researchers indicate
that it is impossible to connect the structure-making/breaking properties
of osmolytes with their stabilization/destabilization attributes.[43,52,73] However, an important factor
is not taken into account in such studies. Namely, the influence of
osmolytes on the hydration layer of peptides is rarely described or
addressed.In our studies, a short trpzip-1
peptide and hewl protein were used to study the hydration
of a real-life
biomacromolecule in its folded form in osmolyte solutions. As these
molecules in their unfolded form were practically unavailable at room
temperature, we used models (GLY and NMG) of unfolded protein fragments
in our research. TMG and urea were used as representatives of stabilizing
and destabilizing osmolytes, respectively. In our work, we used an
experimental method that provided us with the characteristics of hydration
water in terms of the energy and length of hydrogen bonds. With this
in mind, we can discuss the mechanism of stabilization/destabilization
of proteins by osmolytes.TMG strengthens the hydration sphere
of biomacromolecules in their
folded form, while urea weakens it (Figure ). The effect is very similar to that previously
observed for the simple model molecules NMA and DMSO.[53] Thus, NMA and DMSO appeared to be adequately selected models
of the surface features of folded proteins.When TMG is considered,
it should be noted that hydrogen bonds
in the hydration spheres of TMG[42,74] and proteins[30,75,76] are stronger than those in pure
water. The interaction between these enhanced hydration spheres introduces
an additional strengthening due to the cooperative nature of hydrogen
bonds. This general description is based on the averaged characteristics
of the hydrogen bonds in the hydration spheres. Given the diverse
nature of the protein surface, such enhancing interactions are only
likely at areas, where they have a chance to occur, that is, where
close proximity to polar and nonpolar groups takes place.Conversely,
although urea is a weak structure maker in aqueous
solution,[46,52,67] it significantly
weakens the hydration spheres of biomacromolecules. This result confirms
our previous statement that urea disturbs the cooperativity of the
hydrogen bonds of water hydrating the adjacent hydrophilic and hydrophobic
regions on the surface of the biomacromolecule.[53] Such proximity of both group types is much more likely
in the case of protein in the folded form than unfolded ones; thus,
the presence of the aforementioned cooperativity is more typical of
the former case. We still need to stress the ability of urea to interact
directly with the surface of protein, especially in areas where hydrophobic
groups are present,[53,65,77−79] resulting in the partial release of hydration water
molecules.[80] This phenomenon explains the
interruption of the continuity of the hydrogen bond network of water
molecules hydrating polar and nonpolar areas that are in close proximity.
In this context, we find justification for the weakening of the hydration
sphere of folded proteins by urea, despite its poorly enhancing effect
on water. Accordingly, urea destabilizes the native form of the protein
and peptide in the entire range of osmolyte concentrations. Other
studies on the native protein (ferrocytochrome c)[81] and the poly(N-isopropylacrylamide)
brushes[82] have shown that urea can act
as a stabilizer at low concentrations, while at higher concentrations,
it acts as a denaturant.The examined osmolytes influence the
hydration spheres of the unfolded
fragment models (GLY, NMG) to a different extent than the hydration
spheres of real biomacromolecules (Figures and 5). TMG is excluded
from the hydration spheres of models at low molalities. This phenomenon
is confirmed with the incorporation of additional water molecules,
taken from the bulk, in the vicinity between hydration spheres of
this osmolyte and a model. These water molecules cross-link their
hydration spheres but also indicate that TMG, with its hydration layer,
avoids any direct contact with model molecules. Such behavior supports
the entropic mechanism of protein stabilization.[19,83] In the case of the unfolded form of proteins, the excluded volume
for the osmolyte should be larger when compared to the case of the
folded form,[84] which leads to a shift of
protein equilibrium toward the folded form. It should be noted that
the exclusion effect is not observed in the case of the currently
studied biomacromolecules; however, it was observed in the case of
NMA, the model molecule of the folded form of protein, at low TMG
molality.[53] Excess water molecules cross-linking
the GLY (or NMG) and TMG hydration spheres are characterized by weaker
hydrogen bonds when compared to those in the hydration sphere of these
models. As a result, TMG lowers the hydrogen bond energy of the GLY
hydration layer for the entire osmolyte molality range investigated
(although, above the molality of ca. 2 mol kg–1,
the interaction changes its character), and in the case of NMG to
a molality of ca. 1 mol kg–1 (Figure ). These findings indicate that the hydration
sphere of the protein in its folded form is energetically stabilized
by the presence of TMG when compared to the case of unfolded models.
At higher molalities, in the case of NMG, enhancement of the hydrogen
bonds is observed. However, the enhancement is weaker when the TMG
contributions in the solution increase (Figure ). The latter result indicates the appearance
of a specific strengthened molecular structure composed of water and
both solutes, which depends on the solution composition. Summarizing
the influence of TMG, two mechanisms of stabilization of the protein
folded form are visible: energetic stabilization of the hydration
sphere of the folded form[85−87] and stronger entropic destabilization
of the unfolded form.Urea initially strengthens the hydration
spheres of GLY and NMG
(Figure ). This behavior
is clearly distant from its effect on the hydration water of tripzip-1 and hewl, where hydrogen bonds
become weaker at the lowest urea molality (Figure ). In the case of GLY and NMG, at higher
urea molalities, a weakening of the hydrogen bonds of the hydrating
water is observed, which may be the result of a direct interaction
of osmolyte and the model molecules.The obtained results clearly
indicate that the energetic effect
of urea on the hydration sphere of the folded and unfolded forms of
protein determines the shifting of the denaturation equilibrium toward
the unfolded structure. This effect seems to be associated with the
direct interaction of urea molecules with the protein surface in the
folded state.
Conclusions
In this work, we investigated
the impact of stabilizing (TMG) and
destabilizing (urea) osmolytes on hydration spheres of biomacromolecules
in folded forms (trpzip-1 peptide and hewl) and hydration spheres of models of unfolded peptide and protein
fragments (GLY and NMG). The results obtained for GLY and NMG, as
minimal models of the unfolded state of a protein, must be treated
with caution due to their significant limitations. We provide information
on the structural and energetic states of those water molecules that
are simultaneously under the influence of both solutes: the biomacromolecule/model
molecule and the osmolyte. Our findings allow us to propose a mechanism
for the stabilization/destabilization of proteins by osmolytes.An important feature of biomacromolecules in the folded state is
the close proximity of the superficial hydrophilic and hydrophobic
groups. Water molecules, those involved in hydrogen bonding with the
hydrophilic group and those interacting with each other around the
hydrophobic groups, cooperate in the formation of a strong hydration
sphere around the biomacromolecule. The addition of TMG, with its
enhanced hydration sphere, to the biomacromolecule solution causes
additional strengthening of the hydration sphere around the protein
or peptide. Conversely, the presence of urea in the solution destroys
the water hydrogen bond network between the polar and nonpolar groups,
and as a result, the water hydrogen bonds in the hydration sphere
of the biomacromolecule are weakened. Accordingly, both osmolytes
exert an enthalpy effect on the hydration sphere of the protein in
the folded form: a stabilizing enthalpy effect in the presence of
a stabilizing osmolyte and a destabilizing enthalpy effect in the
presence of a destabilizing osmolyte.However, both osmolytes
have a different effect on the hydration
spheres of the unfolded protein models (GLY and NMG), where hydrophilic
and hydrophobic groups are more distant from each other or one of
them is absent (GLY). Stabilizing osmolytes avoids direct contact
with the unfolded protein, which supports the entropic mechanism of
protein stabilization by osmolytes. In the presence of the destabilizing
osmolyte, enthalpy stabilization of the hydration sphere of the unfolded
protein occurs.Considering the above observations, the most
important factor determining
the effect of osmolytes on proteins is the enthalpy effect exerted
on their hydration spheres, both in the folded and unfolded forms.
Furthermore, in the case of a stabilizing osmolyte, the entropy effect
is also supportive because entropic destabilization of the unfolded
form occurs.
Authors: Yi-Ting Liao; Anthony C Manson; Michael R DeLyser; William G Noid; Paul S Cremer Journal: Proc Natl Acad Sci U S A Date: 2017-02-22 Impact factor: 11.205
Authors: P Bruździak; A Panuszko; E Kaczkowska; B Piotrowski; A Daghir; S Demkowicz; J Stangret Journal: Amino Acids Date: 2017-10-17 Impact factor: 3.520