Literature DB >> 35418686

Cell transcriptomic atlas of the non-human primate Macaca fascicularis.

Lei Han1,2,3, Xiaoyu Wei1,4, Chuanyu Liu1,2,3, Giacomo Volpe5, Zhenkun Zhuang1,6, Xuanxuan Zou1,4, Zhifeng Wang1,2, Taotao Pan1,2, Yue Yuan1,4, Xiao Zhang7, Peng Fan7, Pengcheng Guo7, Yiwei Lai8, Ying Lei1,2,3, Xingyuan Liu7, Feng Yu8, Shuncheng Shangguan9, Guangyao Lai9, Qiuting Deng1,4, Ya Liu1,2, Liang Wu1,2,4, Quan Shi1,10, Hao Yu1, Yunting Huang1,11, Mengnan Cheng1,4, Jiangshan Xu1,4, Yang Liu1,4, Mingyue Wang1, Chunqing Wang1,4, Yuanhang Zhang1,4, Duo Xie1,4, Yunzhi Yang12, Yeya Yu12, Huiwen Zheng12, Yanrong Wei12, Fubaoqian Huang1,6, Junjie Lei1,4, Waidong Huang1,4, Zhiyong Zhu1,4, Haorong Lu1,11, Bo Wang1,11, Xiaofeng Wei1,11, Fengzhen Chen1,11, Tao Yang1,11, Wensi Du1,11, Jing Chen1,11, Shibo Xu13, Juan An8,14, Carl Ward8, Zongren Wang15, Zhong Pei16, Chi-Wai Wong17, Xiaolei Liu7, Huafeng Zhang18, Mingyuan Liu7, Baoming Qin19, Axel Schambach20,21, Joan Isern22, Liqiang Feng23, Yan Liu13, Xiangyu Guo24,25, Zhen Liu26, Qiang Sun26, Patrick H Maxwell27, Nick Barker28, Pura Muñoz-Cánoves29, Ying Gu1, Jan Mulder30,31, Mathias Uhlen30,31, Tao Tan32, Shiping Liu1,2,3, Huanming Yang1,33, Jian Wang1,33, Yong Hou34,35,36,37, Xun Xu38,39,40,41, Miguel A Esteban42,43,44, Longqi Liu45,46,47,48.   

Abstract

Studying tissue composition and function in non-human primates (NHPs) is crucial to understand the nature of our own species. Here we present a large-scale cell transcriptomic atlas that encompasses over 1 million cells from 45 tissues of the adult NHP Macaca fascicularis. This dataset provides a vast annotated resource to study a species phylogenetically close to humans. To demonstrate the utility of the atlas, we have reconstructed the cell-cell interaction networks that drive Wnt signalling across the body, mapped the distribution of receptors and co-receptors for viruses causing human infectious diseases, and intersected our data with human genetic disease orthologues to establish potential clinical associations. Our M. fascicularis cell atlas constitutes an essential reference for future studies in humans and NHPs.
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2022        PMID: 35418686     DOI: 10.1038/s41586-022-04587-3

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  78 in total

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Journal:  Nature       Date:  2020-03-25       Impact factor: 49.962

4.  Mapping the Mouse Cell Atlas by Microwell-Seq.

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Journal:  Cell       Date:  2018-02-22       Impact factor: 41.582

5.  Systematic comparison of single-cell and single-nucleus RNA-sequencing methods.

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6.  COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.

Authors:  Toni M Delorey; Carly G K Ziegler; Graham Heimberg; Rachelly Normand; Yiming Yang; Åsa Segerstolpe; Domenic Abbondanza; Stephen J Fleming; Ayshwarya Subramanian; Daniel T Montoro; Karthik A Jagadeesh; Kushal K Dey; Pritha Sen; Michal Slyper; Yered H Pita-Juárez; Devan Phillips; Jana Biermann; Zohar Bloom-Ackermann; Nikolaos Barkas; Andrea Ganna; James Gomez; Johannes C Melms; Igor Katsyv; Erica Normandin; Pourya Naderi; Yury V Popov; Siddharth S Raju; Sebastian Niezen; Linus T-Y Tsai; Katherine J Siddle; Malika Sud; Victoria M Tran; Shamsudheen K Vellarikkal; Yiping Wang; Liat Amir-Zilberstein; Deepak S Atri; Joseph Beechem; Olga R Brook; Jonathan Chen; Prajan Divakar; Phylicia Dorceus; Jesse M Engreitz; Adam Essene; Donna M Fitzgerald; Robin Fropf; Steven Gazal; Joshua Gould; John Grzyb; Tyler Harvey; Jonathan Hecht; Tyler Hether; Judit Jané-Valbuena; Michael Leney-Greene; Hui Ma; Cristin McCabe; Daniel E McLoughlin; Eric M Miller; Christoph Muus; Mari Niemi; Robert Padera; Liuliu Pan; Deepti Pant; Carmel Pe'er; Jenna Pfiffner-Borges; Christopher J Pinto; Jacob Plaisted; Jason Reeves; Marty Ross; Melissa Rudy; Erroll H Rueckert; Michelle Siciliano; Alexander Sturm; Ellen Todres; Avinash Waghray; Sarah Warren; Shuting Zhang; Daniel R Zollinger; Lisa Cosimi; Rajat M Gupta; Nir Hacohen; Hanina Hibshoosh; Winston Hide; Alkes L Price; Jayaraj Rajagopal; Purushothama Rao Tata; Stefan Riedel; Gyongyi Szabo; Timothy L Tickle; Patrick T Ellinor; Deborah Hung; Pardis C Sabeti; Richard Novak; Robert Rogers; Donald E Ingber; Z Gordon Jiang; Dejan Juric; Mehrtash Babadi; Samouil L Farhi; Benjamin Izar; James R Stone; Ioannis S Vlachos; Isaac H Solomon; Orr Ashenberg; Caroline B M Porter; Bo Li; Alex K Shalek; Alexandra-Chloé Villani; Orit Rozenblatt-Rosen; Aviv Regev
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7.  Structural cells are key regulators of organ-specific immune responses.

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8.  Gibbon genome and the fast karyotype evolution of small apes.

Authors:  Lucia Carbone; R Alan Harris; Sante Gnerre; Krishna R Veeramah; Belen Lorente-Galdos; John Huddleston; Thomas J Meyer; Javier Herrero; Christian Roos; Bronwen Aken; Fabio Anaclerio; Nicoletta Archidiacono; Carl Baker; Daniel Barrell; Mark A Batzer; Kathryn Beal; Antoine Blancher; Craig L Bohrson; Markus Brameier; Michael S Campbell; Oronzo Capozzi; Claudio Casola; Giorgia Chiatante; Andrew Cree; Annette Damert; Pieter J de Jong; Laura Dumas; Marcos Fernandez-Callejo; Paul Flicek; Nina V Fuchs; Ivo Gut; Marta Gut; Matthew W Hahn; Jessica Hernandez-Rodriguez; LaDeana W Hillier; Robert Hubley; Bianca Ianc; Zsuzsanna Izsvák; Nina G Jablonski; Laurel M Johnstone; Anis Karimpour-Fard; Miriam K Konkel; Dennis Kostka; Nathan H Lazar; Sandra L Lee; Lora R Lewis; Yue Liu; Devin P Locke; Swapan Mallick; Fernando L Mendez; Matthieu Muffato; Lynne V Nazareth; Kimberly A Nevonen; Majesta O'Bleness; Cornelia Ochis; Duncan T Odom; Katherine S Pollard; Javier Quilez; David Reich; Mariano Rocchi; Gerald G Schumann; Stephen Searle; James M Sikela; Gabriella Skollar; Arian Smit; Kemal Sonmez; Boudewijn ten Hallers; Elizabeth Terhune; Gregg W C Thomas; Brygg Ullmer; Mario Ventura; Jerilyn A Walker; Jeffrey D Wall; Lutz Walter; Michelle C Ward; Sarah J Wheelan; Christopher W Whelan; Simon White; Larry J Wilhelm; August E Woerner; Mark Yandell; Baoli Zhu; Michael F Hammer; Tomas Marques-Bonet; Evan E Eichler; Lucinda Fulton; Catrina Fronick; Donna M Muzny; Wesley C Warren; Kim C Worley; Jeffrey Rogers; Richard K Wilson; Richard A Gibbs
Journal:  Nature       Date:  2014-09-11       Impact factor: 49.962

9.  Single-Cell Sequencing of Peripheral Mononuclear Cells Reveals Distinct Immune Response Landscapes of COVID-19 and Influenza Patients.

Authors:  Linnan Zhu; Penghui Yang; Yingze Zhao; Zhenkun Zhuang; Zhifeng Wang; Rui Song; Jie Zhang; Chuanyu Liu; Qianqian Gao; Qumiao Xu; Xiaoyu Wei; Hai-Xi Sun; Beiwei Ye; Yanan Wu; Ning Zhang; Guanglin Lei; Lingxiang Yu; Jin Yan; Guanghao Diao; Fanping Meng; Changqing Bai; Panyong Mao; Yeya Yu; Mingyue Wang; Yue Yuan; Qiuting Deng; Ziyi Li; Yunting Huang; Guohai Hu; Yang Liu; Xiaoqian Wang; Ziqian Xu; Peipei Liu; Yuhai Bi; Yi Shi; Shaogeng Zhang; Zhihai Chen; Jian Wang; Xun Xu; Guizhen Wu; Fu-Sheng Wang; George F Gao; Longqi Liu; William J Liu
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Review 1.  What is a cell type and how to define it?

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Journal:  Cell       Date:  2022-07-21       Impact factor: 66.850

2.  A reference single-cell regulomic and transcriptomic map of cynomolgus monkeys.

Authors:  Jiao Qu; Fa Yang; Tao Zhu; Yingshuo Wang; Wen Fang; Yan Ding; Xue Zhao; Xianjia Qi; Qiangmin Xie; Ming Chen; Qiang Xu; Yicheng Xie; Yang Sun; Dijun Chen
Journal:  Nat Commun       Date:  2022-07-13       Impact factor: 17.694

3.  Gene expression profiles of specific chicken skeletal muscles.

Authors:  Hua Kui; Bo Ran; Maosen Yang; Xin Shi; Yingyu Luo; Yujie Wang; Tao Wang; Diyan Li; Surong Shuai; Mingzhou Li
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4.  Single-Nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma.

Authors:  Zhihua Ou; Shitong Lin; Jiaying Qiu; Wencheng Ding; Peidi Ren; Dongsheng Chen; Jiaxuan Wang; Yihan Tong; Di Wu; Ao Chen; Yuan Deng; Mengnan Cheng; Ting Peng; Haorong Lu; Huanming Yang; Jian Wang; Xin Jin; Ding Ma; Xun Xu; Yanzhou Wang; Junhua Li; Peng Wu
Journal:  Adv Sci (Weinh)       Date:  2022-08-19       Impact factor: 17.521

5.  Enhanced metanephric specification to functional proximal tubule enables toxicity screening and infectious disease modelling in kidney organoids.

Authors:  Sean B Wilson; Ker Sin Tan; Jessica M Vanslambrouck; Ella Groenewegen; Rajeev Rudraraju; Jessica Neil; Kynan T Lawlor; Sophia Mah; Michelle Scurr; Sara E Howden; Kanta Subbarao; Melissa H Little
Journal:  Nat Commun       Date:  2022-10-08       Impact factor: 17.694

  5 in total

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