Literature DB >> 29072289

The Human Cell Atlas: from vision to reality.

Orit Rozenblatt-Rosen, Michael J T Stubbington, Aviv Regev, Sarah A Teichmann.   

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Year:  2017        PMID: 29072289     DOI: 10.1038/550451a

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


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  10 in total

1.  Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.

Authors:  Amit Zeisel; Ana B Muñoz-Manchado; Simone Codeluppi; Peter Lönnerberg; Gioele La Manno; Anna Juréus; Sueli Marques; Hermany Munguba; Liqun He; Christer Betsholtz; Charlotte Rolny; Gonçalo Castelo-Branco; Jens Hjerling-Leffler; Sten Linnarsson
Journal:  Science       Date:  2015-02-19       Impact factor: 47.728

2.  Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.

Authors:  Karthik Shekhar; Sylvain W Lapan; Irene E Whitney; Nicholas M Tran; Evan Z Macosko; Monika Kowalczyk; Xian Adiconis; Joshua Z Levin; James Nemesh; Melissa Goldman; Steven A McCarroll; Constance L Cepko; Aviv Regev; Joshua R Sanes
Journal:  Cell       Date:  2016-08-25       Impact factor: 41.582

3.  Single-cell messenger RNA sequencing reveals rare intestinal cell types.

Authors:  Dominic Grün; Anna Lyubimova; Lennart Kester; Kay Wiebrands; Onur Basak; Nobuo Sasaki; Hans Clevers; Alexander van Oudenaarden
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

4.  Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.

Authors:  Itay Tirosh; Benjamin Izar; Sanjay M Prakadan; Marc H Wadsworth; Daniel Treacy; John J Trombetta; Asaf Rotem; Christopher Rodman; Christine Lian; George Murphy; Mohammad Fallahi-Sichani; Ken Dutton-Regester; Jia-Ren Lin; Ofir Cohen; Parin Shah; Diana Lu; Alex S Genshaft; Travis K Hughes; Carly G K Ziegler; Samuel W Kazer; Aleth Gaillard; Kellie E Kolb; Alexandra-Chloé Villani; Cory M Johannessen; Aleksandr Y Andreev; Eliezer M Van Allen; Monica Bertagnolli; Peter K Sorger; Ryan J Sullivan; Keith T Flaherty; Dennie T Frederick; Judit Jané-Valbuena; Charles H Yoon; Orit Rozenblatt-Rosen; Alex K Shalek; Aviv Regev; Levi A Garraway
Journal:  Science       Date:  2016-04-08       Impact factor: 47.728

5.  Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

Authors:  Blue B Lake; Rizi Ai; Gwendolyn E Kaeser; Neeraj S Salathia; Yun C Yung; Rui Liu; Andre Wildberg; Derek Gao; Ho-Lim Fung; Song Chen; Raakhee Vijayaraghavan; Julian Wong; Allison Chen; Xiaoyan Sheng; Fiona Kaper; Richard Shen; Mostafa Ronaghi; Jian-Bing Fan; Wei Wang; Jerold Chun; Kun Zhang
Journal:  Science       Date:  2016-06-24       Impact factor: 47.728

6.  Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors.

Authors:  Alexandra-Chloé Villani; Rahul Satija; Gary Reynolds; Siranush Sarkizova; Karthik Shekhar; James Fletcher; Morgane Griesbeck; Andrew Butler; Shiwei Zheng; Suzan Lazo; Laura Jardine; David Dixon; Emily Stephenson; Emil Nilsson; Ida Grundberg; David McDonald; Andrew Filby; Weibo Li; Philip L De Jager; Orit Rozenblatt-Rosen; Andrew A Lane; Muzlifah Haniffa; Aviv Regev; Nir Hacohen
Journal:  Science       Date:  2017-04-21       Impact factor: 47.728

7.  Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria.

Authors:  Tapio Lönnberg; Valentine Svensson; Kylie R James; Daniel Fernandez-Ruiz; Ismail Sebina; Ruddy Montandon; Megan S F Soon; Lily G Fogg; Arya Sheela Nair; Urijah Liligeto; Michael J T Stubbington; Lam-Ha Ly; Frederik Otzen Bagger; Max Zwiessele; Neil D Lawrence; Fernando Souza-Fonseca-Guimaraes; Patrick T Bunn; Christian R Engwerda; William R Heath; Oliver Billker; Oliver Stegle; Ashraful Haque; Sarah A Teichmann
Journal:  Sci Immunol       Date:  2017-03-03

8.  A survey of human brain transcriptome diversity at the single cell level.

Authors:  Spyros Darmanis; Steven A Sloan; Ye Zhang; Martin Enge; Christine Caneda; Lawrence M Shuer; Melanie G Hayden Gephart; Ben A Barres; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-18       Impact factor: 11.205

9.  Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.

Authors:  Bosiljka Tasic; Vilas Menon; Thuc Nghi Nguyen; Tae Kyung Kim; Tim Jarsky; Zizhen Yao; Boaz Levi; Lucas T Gray; Staci A Sorensen; Tim Dolbeare; Darren Bertagnolli; Jeff Goldy; Nadiya Shapovalova; Sheana Parry; Changkyu Lee; Kimberly Smith; Amy Bernard; Linda Madisen; Susan M Sunkin; Michael Hawrylycz; Christof Koch; Hongkui Zeng
Journal:  Nat Neurosci       Date:  2016-01-04       Impact factor: 24.884

10.  Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.

Authors:  Alex A Pollen; Tomasz J Nowakowski; Joe Shuga; Xiaohui Wang; Anne A Leyrat; Jan H Lui; Nianzhen Li; Lukasz Szpankowski; Brian Fowler; Peilin Chen; Naveen Ramalingam; Gang Sun; Myo Thu; Michael Norris; Ronald Lebofsky; Dominique Toppani; Darnell W Kemp; Michael Wong; Barry Clerkson; Brittnee N Jones; Shiquan Wu; Lawrence Knutsson; Beatriz Alvarado; Jing Wang; Lesley S Weaver; Andrew P May; Robert C Jones; Marc A Unger; Arnold R Kriegstein; Jay A A West
Journal:  Nat Biotechnol       Date:  2014-08-03       Impact factor: 54.908

  10 in total
  174 in total

1.  Embracing Systems Toxicology at Single-Cell Resolution.

Authors:  Qiang Zhang; W Michael Caudle; Jingbo Pi; Sudin Bhattacharya; Melvin E Andersen; Norbert E Kaminski; Rory B Conolly
Journal:  Curr Opin Toxicol       Date:  2019-04-19

2.  SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data.

Authors:  Matthew D Young; Sam Behjati
Journal:  Gigascience       Date:  2020-12-26       Impact factor: 6.524

Review 3.  The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution.

Authors:  Deanne M Taylor; Bruce J Aronow; Kai Tan; Kathrin Bernt; Nathan Salomonis; Casey S Greene; Alina Frolova; Sarah E Henrickson; Andrew Wells; Liming Pei; Jyoti K Jaiswal; Jeffrey Whitsett; Kathryn E Hamilton; Sonya A MacParland; Judith Kelsen; Robert O Heuckeroth; S Steven Potter; Laura A Vella; Natalie A Terry; Louis R Ghanem; Benjamin C Kennedy; Ingo Helbig; Kathleen E Sullivan; Leslie Castelo-Soccio; Arnold Kreigstein; Florian Herse; Martijn C Nawijn; Gerard H Koppelman; Melissa Haendel; Nomi L Harris; Jo Lynne Rokita; Yuanchao Zhang; Aviv Regev; Orit Rozenblatt-Rosen; Jennifer E Rood; Timothy L Tickle; Roser Vento-Tormo; Saif Alimohamed; Monkol Lek; Jessica C Mar; Kathleen M Loomes; David M Barrett; Prech Uapinyoying; Alan H Beggs; Pankaj B Agrawal; Yi-Wen Chen; Amanda B Muir; Lana X Garmire; Scott B Snapper; Javad Nazarian; Steven H Seeholzer; Hossein Fazelinia; Larry N Singh; Robert B Faryabi; Pichai Raman; Noor Dawany; Hongbo Michael Xie; Batsal Devkota; Sharon J Diskin; Stewart A Anderson; Eric F Rappaport; William Peranteau; Kathryn A Wikenheiser-Brokamp; Sarah Teichmann; Douglas Wallace; Tao Peng; Yang-Yang Ding; Man S Kim; Yi Xing; Sek Won Kong; Carsten G Bönnemann; Kenneth D Mandl; Peter S White
Journal:  Dev Cell       Date:  2019-03-28       Impact factor: 12.270

4.  Single Cell Genomics for Tumor Heterogeneity.

Authors:  Hae-Ock Lee; Woong-Yang Park
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

5.  Modifying a Commonly Expressed Endocytic Receptor Retargets Nanoparticles in Vivo.

Authors:  Cory D Sago; Melissa P Lokugamage; Gwyneth N Lando; Naima Djeddar; Nirav N Shah; Chris Syed; Anton V Bryksin; James E Dahlman
Journal:  Nano Lett       Date:  2018-09-20       Impact factor: 11.189

Review 6.  Using Large Datasets to Understand Nanotechnology.

Authors:  Kalina Paunovska; David Loughrey; Cory D Sago; Robert Langer; James E Dahlman
Journal:  Adv Mater       Date:  2019-08-20       Impact factor: 30.849

7.  Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease.

Authors:  Jihwan Park; Rojesh Shrestha; Chengxiang Qiu; Ayano Kondo; Shizheng Huang; Max Werth; Mingyao Li; Jonathan Barasch; Katalin Suszták
Journal:  Science       Date:  2018-04-05       Impact factor: 47.728

Review 8.  Progress Toward Cancer Data Ecosystems.

Authors:  Robert L Grossman
Journal:  Cancer J       Date:  2018 May/Jun       Impact factor: 3.360

9.  Single cell RNA-sequencing reveals cellular heterogeneity and trajectories of lineage specification during murine embryonic limb development.

Authors:  Natalie H Kelly; Nguyen P T Huynh; Farshid Guilak
Journal:  Matrix Biol       Date:  2019-12-24       Impact factor: 11.583

10.  Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers.

Authors:  Yilin Zhao; Phillip A Wilmarth; Catherine Cheng; Saima Limi; Velia M Fowler; Deyou Zheng; Larry L David; Ales Cvekl
Journal:  Exp Eye Res       Date:  2018-10-22       Impact factor: 3.467

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