Literature DB >> 35868277

What is a cell type and how to define it?

Hongkui Zeng1.   

Abstract

Cell types are the basic functional units of an organism. Cell types exhibit diverse phenotypic properties at multiple levels, making them challenging to define, categorize, and understand. This review provides an overview of the basic principles of cell types rooted in evolution and development and discusses approaches to characterize and classify cell types and investigate how they contribute to the organism's function, using the mammalian brain as a primary example. I propose a roadmap toward a conceptual framework and knowledge base of cell types that will enable a deeper understanding of the dynamic changes of cellular function under healthy and diseased conditions.
Copyright © 2022 Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35868277      PMCID: PMC9342916          DOI: 10.1016/j.cell.2022.06.031

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  207 in total

1.  Whole-brain serial-section electron microscopy in larval zebrafish.

Authors:  David Grant Colburn Hildebrand; Marcelo Cicconet; Russel Miguel Torres; Woohyuk Choi; Tran Minh Quan; Jungmin Moon; Arthur Willis Wetzel; Andrew Scott Champion; Brett Jesse Graham; Owen Randlett; George Scott Plummer; Ruben Portugues; Isaac Henry Bianco; Stephan Saalfeld; Alexander David Baden; Kunal Lillaney; Randal Burns; Joshua Tzvi Vogelstein; Alexander Franz Schier; Wei-Chung Allen Lee; Won-Ki Jeong; Jeff William Lichtman; Florian Engert
Journal:  Nature       Date:  2017-05-10       Impact factor: 49.962

2.  Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly.

Authors:  Hongjie Li; Jasper Janssens; Maxime De Waegeneer; Sai Saroja Kolluru; Kristofer Davie; Vincent Gardeux; Wouter Saelens; Fabrice P A David; Maria Brbić; Katina Spanier; Jure Leskovec; Colleen N McLaughlin; Qijing Xie; Robert C Jones; Katja Brueckner; Jiwon Shim; Sudhir Gopal Tattikota; Frank Schnorrer; Katja Rust; Todd G Nystul; Zita Carvalho-Santos; Carlos Ribeiro; Soumitra Pal; Sharvani Mahadevaraju; Teresa M Przytycka; Aaron M Allen; Stephen F Goodwin; Cameron W Berry; Margaret T Fuller; Helen White-Cooper; Erika L Matunis; Stephen DiNardo; Anthony Galenza; Lucy Erin O'Brien; Julian A T Dow; Heinrich Jasper; Brian Oliver; Norbert Perrimon; Bart Deplancke; Stephen R Quake; Liqun Luo; Stein Aerts; Devika Agarwal; Yasir Ahmed-Braimah; Michelle Arbeitman; Majd M Ariss; Jordan Augsburger; Kumar Ayush; Catherine C Baker; Torsten Banisch; Katja Birker; Rolf Bodmer; Benjamin Bolival; Susanna E Brantley; Julie A Brill; Nora C Brown; Norene A Buehner; Xiaoyu Tracy Cai; Rita Cardoso-Figueiredo; Fernando Casares; Amy Chang; Thomas R Clandinin; Sheela Crasta; Claude Desplan; Angela M Detweiler; Darshan B Dhakan; Erika Donà; Stefanie Engert; Swann Floc'hlay; Nancy George; Amanda J González-Segarra; Andrew K Groves; Samantha Gumbin; Yanmeng Guo; Devon E Harris; Yael Heifetz; Stephen L Holtz; Felix Horns; Bruno Hudry; Ruei-Jiun Hung; Yuh Nung Jan; Jacob S Jaszczak; Gregory S X E Jefferis; Jim Karkanias; Timothy L Karr; Nadja Sandra Katheder; James Kezos; Anna A Kim; Seung K Kim; Lutz Kockel; Nikolaos Konstantinides; Thomas B Kornberg; Henry M Krause; Andrew Thomas Labott; Meghan Laturney; Ruth Lehmann; Sarah Leinwand; Jiefu Li; Joshua Shing Shun Li; Kai Li; Ke Li; Liying Li; Tun Li; Maria Litovchenko; Han-Hsuan Liu; Yifang Liu; Tzu-Chiao Lu; Jonathan Manning; Anjeli Mase; Mikaela Matera-Vatnick; Neuza Reis Matias; Caitlin E McDonough-Goldstein; Aaron McGeever; Alex D McLachlan; Paola Moreno-Roman; Norma Neff; Megan Neville; Sang Ngo; Tanja Nielsen; Caitlin E O'Brien; David Osumi-Sutherland; Mehmet Neset Özel; Irene Papatheodorou; Maja Petkovic; Clare Pilgrim; Angela Oliveira Pisco; Carolina Reisenman; Erin Nicole Sanders; Gilberto Dos Santos; Kristin Scott; Aparna Sherlekar; Philip Shiu; David Sims; Rene V Sit; Maija Slaidina; Harold E Smith; Gabriella Sterne; Yu-Han Su; Daniel Sutton; Marco Tamayo; Michelle Tan; Ibrahim Tastekin; Christoph Treiber; David Vacek; Georg Vogler; Scott Waddell; Wanpeng Wang; Rachel I Wilson; Mariana F Wolfner; Yiu-Cheung E Wong; Anthony Xie; Jun Xu; Shinya Yamamoto; Jia Yan; Zepeng Yao; Kazuki Yoda; Ruijun Zhu; Robert P Zinzen
Journal:  Science       Date:  2022-03-04       Impact factor: 63.714

3.  Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing.

Authors:  Qingyun Li; Zuolin Cheng; Lu Zhou; Spyros Darmanis; Norma F Neff; Jennifer Okamoto; Gunsagar Gulati; Mariko L Bennett; Lu O Sun; Laura E Clarke; Julia Marschallinger; Guoqiang Yu; Stephen R Quake; Tony Wyss-Coray; Ben A Barres
Journal:  Neuron       Date:  2018-12-31       Impact factor: 17.173

4.  Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

Authors:  Blue B Lake; Rizi Ai; Gwendolyn E Kaeser; Neeraj S Salathia; Yun C Yung; Rui Liu; Andre Wildberg; Derek Gao; Ho-Lim Fung; Song Chen; Raakhee Vijayaraghavan; Julian Wong; Allison Chen; Xiaoyan Sheng; Fiona Kaper; Richard Shen; Mostafa Ronaghi; Jian-Bing Fan; Wei Wang; Jerold Chun; Kun Zhang
Journal:  Science       Date:  2016-06-24       Impact factor: 47.728

Review 5.  The neuronal organization of the retina.

Authors:  Richard H Masland
Journal:  Neuron       Date:  2012-10-17       Impact factor: 17.173

6.  Epigenomic diversity of cortical projection neurons in the mouse brain.

Authors:  Zhuzhu Zhang; Jingtian Zhou; Pengcheng Tan; Yan Pang; Angeline C Rivkin; Megan A Kirchgessner; Elora Williams; Cheng-Ta Lee; Hanqing Liu; Alexis D Franklin; Paula Assakura Miyazaki; Anna Bartlett; Andrew I Aldridge; Minh Vu; Lara Boggeman; Conor Fitzpatrick; Joseph R Nery; Rosa G Castanon; Mohammad Rashid; Matthew W Jacobs; Tony Ito-Cole; Carolyn O'Connor; António Pinto-Duartec; Bertha Dominguez; Jared B Smith; Sheng-Yong Niu; Kuo-Fen Lee; Xin Jin; Eran A Mukamel; M Margarita Behrens; Joseph R Ecker; Edward M Callaway
Journal:  Nature       Date:  2021-10-06       Impact factor: 69.504

Review 7.  Cell type and circuit modules in the spinal cord.

Authors:  Peter J Osseward; Samuel L Pfaff
Journal:  Curr Opin Neurobiol       Date:  2019-04-05       Impact factor: 6.627

8.  A molecular atlas of cell types and zonation in the brain vasculature.

Authors:  Michael Vanlandewijck; Liqun He; Maarja Andaloussi Mäe; Johanna Andrae; Koji Ando; Francesca Del Gaudio; Khayrun Nahar; Thibaud Lebouvier; Bàrbara Laviña; Leonor Gouveia; Ying Sun; Elisabeth Raschperger; Markus Räsänen; Yvette Zarb; Naoki Mochizuki; Annika Keller; Urban Lendahl; Christer Betsholtz
Journal:  Nature       Date:  2018-02-14       Impact factor: 49.962

9.  A GAL4-driver line resource for Drosophila neurobiology.

Authors:  Arnim Jenett; Gerald M Rubin; Teri-T B Ngo; David Shepherd; Christine Murphy; Heather Dionne; Barret D Pfeiffer; Amanda Cavallaro; Donald Hall; Jennifer Jeter; Nirmala Iyer; Dona Fetter; Joanna H Hausenfluck; Hanchuan Peng; Eric T Trautman; Robert R Svirskas; Eugene W Myers; Zbigniew R Iwinski; Yoshinori Aso; Gina M DePasquale; Adrianne Enos; Phuson Hulamm; Shing Chun Benny Lam; Hsing-Hsi Li; Todd R Laverty; Fuhui Long; Lei Qu; Sean D Murphy; Konrad Rokicki; Todd Safford; Kshiti Shaw; Julie H Simpson; Allison Sowell; Susana Tae; Yang Yu; Christopher T Zugates
Journal:  Cell Rep       Date:  2012-10-11       Impact factor: 9.423

10.  The Human Cell Atlas.

Authors:  Aviv Regev; Sarah A Teichmann; Eric S Lander; Ido Amit; Christophe Benoist; Ewan Birney; Bernd Bodenmiller; Peter Campbell; Piero Carninci; Menna Clatworthy; Hans Clevers; Bart Deplancke; Ian Dunham; James Eberwine; Roland Eils; Wolfgang Enard; Andrew Farmer; Lars Fugger; Berthold Göttgens; Nir Hacohen; Muzlifah Haniffa; Martin Hemberg; Seung Kim; Paul Klenerman; Arnold Kriegstein; Ed Lein; Sten Linnarsson; Emma Lundberg; Joakim Lundeberg; Partha Majumder; John C Marioni; Miriam Merad; Musa Mhlanga; Martijn Nawijn; Mihai Netea; Garry Nolan; Dana Pe'er; Anthony Phillipakis; Chris P Ponting; Stephen Quake; Wolf Reik; Orit Rozenblatt-Rosen; Joshua Sanes; Rahul Satija; Ton N Schumacher; Alex Shalek; Ehud Shapiro; Padmanee Sharma; Jay W Shin; Oliver Stegle; Michael Stratton; Michael J T Stubbington; Fabian J Theis; Matthias Uhlen; Alexander van Oudenaarden; Allon Wagner; Fiona Watt; Jonathan Weissman; Barbara Wold; Ramnik Xavier; Nir Yosef
Journal:  Elife       Date:  2017-12-05       Impact factor: 8.140

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